prot_H-paniculata_contig10654.426.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10654.426.1
Unique Nameprot_H-paniculata_contig10654.426.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length217
Homology
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 4.700e-83
Identity = 140/210 (66.67%), Postives = 162/210 (77.14%), Query Frame = 0
Query:    1 GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLVRLVVERPVVLFAAKSGR 210
            G+  + +KGVGRGDV+ELYG SGSGKSEVLINVVA+ VMPAWLGGEE+ A FFDNDGRLSILRLEQLL+ KI+ NTTFQVK+ A+GG GG                        L SD+E +L  CL RLRV+RP+ LFELLA++EVLRFEL HRP VV VDGM SF+WQDKMAQSCGG+AVSMQG V K+LVRL +ERPVVLFAAK+G+
Sbjct:   39 GSSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKS-ASGGVGG----------GGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKNGK 237          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 2.350e-61
Identity = 115/173 (66.47%), Postives = 132/173 (76.30%), Query Frame = 0
Query:    1 GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTVVAVDGMSSFYWQDKM 173
            G   + +KGVGRGDV+ELYG SGSGKSEVLINVVA+ VMPAWLGGEE+ A FFDNDGRLSILRLEQLL+ KI+ NTTFQVK+ A+GG G          XXXXXX         L SD+E +L  CL RLRV+RP+ LFELLA++EVLRFEL HRP VV VDGM SF+WQDK+
Sbjct:   39 GGSKTKDKGVGRGDVVELYGPSGSGKSEVLINVVARCVMPAWLGGEERPAVFFDNDGRLSILRLEQLLKGKISNNTTFQVKS-ASGGIG----------XXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI00148A5519 (DNA repair protein XRCC2 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A5519)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-14
Identity = 59/179 (32.96%), Postives = 94/179 (52.51%), Query Frame = 0
Query:   14 DVIELYGTSGSGKSEVLINVVAQHVMP-AW----LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQ 185
            DVIEL+GT G+GKSE+L+N+VA  ++P  W    L G++ +  F DND + SILRL  ++  +I  + T +   +A                              L +D+E L+  CL++L +IR ++  ELL +L  L   L   P  +V+ +D +S+FYW DK     GG++++ Q
Sbjct:   35 DVIELFGTEGTGKSEILLNLVAGIILPKTWKSVNLNGKDASVIFIDNDYKFSILRLVTVMENRI--HATLKNAPQAEEN---------------------------LTNDVELLIQKCLSKLSLIRCTNSSELLVTLYSLEQTLLSNPNISVIMIDSISAFYWIDKCN---GGESLAAQ 181          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001CF6073B (DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnus TaxID=8234 RepID=UPI001CF6073B)

HSP 1 Score: 79.7 bits (195), Expect = 3.750e-14
Identity = 65/203 (32.02%), Postives = 96/203 (47.29%), Query Frame = 0
Query:    9 GVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFA 205
            G   G+V+ELYGT G+GK+E+L +++ + V+P   GG E    F D D  L +LRL  +L  ++   T     T A    GG                        + SD E  L  CLARL V+  SS  +LL +L  L   L  RP   +V +D +S+FYW D+     GG +++ Q        + L RL+ +  + +FA
Sbjct:   31 GPDHGEVVELYGTEGTGKTELLYHLLCRCVLPVAAGGLEVDVVFVDTDYSLDMLRLVSILDSRLNAGT----HTHAVASEGGSGPALSTSSPS-------------VASD-EAALRSCLARLLVVHCSSSSQLLLTLHFLETSLSSRPGLALVLIDSISAFYWLDRCE---GGASIAKQEEKLSKCAELLGRLLRDYRITVFA 212          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001459174D (DNA repair protein XRCC2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001459174D)

HSP 1 Score: 79.0 bits (193), Expect = 6.110e-14
Identity = 65/207 (31.40%), Postives = 97/207 (46.86%), Query Frame = 0
Query:   14 DVIELYGTSGSGKSEVLINVVAQHVMP----AW-LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPT--VVAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFAAKSG 209
            DV+ELYG+ G GK+E+L+++    ++P     W  GG   +  F D D + SILRL  LL +KIT       +    G                               D+E L+ + L RL V++  S  +LLA+L  L   +       V+ +D +S+FYW D+ A   GG++V+ Q      +V  L RLV +  +VLFA KS 
Sbjct:   36 DVLELYGSEGCGKTEMLLHIACSLILPKTWRGWNFGGCGASLMFIDTDYKFSILRLVTLLEKKITDFLEQNHQVTFTGN--------------------PVTTFNPNSRDVEILIKESLERLNVLQCKSSIQLLATLHSLESSISTNLDICVIMIDSISAFYWLDRCA---GGESVTAQEHVMNLIVNILSRLVNDYNLVLFATKSA 219          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A6P8V3Q7_GYMAC (DNA repair protein XRCC2 isoform X1 n=6 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8V3Q7_GYMAC)

HSP 1 Score: 76.6 bits (187), Expect = 5.110e-13
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 0
Query:   13 GDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNT-----TFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQ----GAVVKSLVRLVVERPVVLFA 205
            G+V+ELYG  G+GK+E+L +++++ ++P   GG E    F D D  L +LRL  +L  ++   T     + QV  +++   G                           SD E LL  CL+RL V+  SS  +LL +L  L   L  RP V  + +D +S+FYW D+     GG +V+ Q        + L RL+ +  + +FA
Sbjct:   35 GEVVELYGPEGTGKTELLYHLLSRCLLPLSAGGLEVDVVFMDTDYSLDMLRLVSILDSRLNAGTHQQRRSIQVSARSSSSSG---------------------------SD-EELLGSCLSRLLVVHCSSSSQLLLTLHFLETTLTSRPRVALLLIDSISAFYWPDRCE---GGTSVTKQEEKLSKCAELLGRLLRDYRITVFA 207          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A8B8DE02_CRAVI (LOW QUALITY PROTEIN: DNA repair protein XRCC2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DE02_CRAVI)

HSP 1 Score: 75.5 bits (184), Expect = 5.610e-13
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 0
Query:    9 GVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAW----LGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQGA----VVKSLVRLVVERPVVLFAAK 207
            G+ R DVIELYG  G+GKSE+L+NVVA  ++P      L G+     + DND + S++RL  ++  KI +  T Q +                              XXX   DIE L+  CL+ L +IR SS  ELL +L  L   +   P +  + +D +S+FYW DK     GG+++  Q      + + L +L+ +  +++ A K
Sbjct:   30 GLHRKDVIELYGGEGTGKSEILLNVVAAMILPKMEIYNLNGKNAHVIYIDNDYKFSMIRLVTIIESKIYS--TLQEEE--------------------------IQDXXXXKEDIENLVQKCLSNLTLIRCSSSSELLITLYGLNESMLCDPNLAMILIDSISAFYWIDKCN---GGESLMAQEKNMMQITEVLQKLIKKFDLIIIATK 207          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001EE60399 (DNA repair protein XRCC2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE60399)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-12
Identity = 62/211 (29.38%), Postives = 98/211 (46.45%), Query Frame = 0
Query:    8 KGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPA-WL----GGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQV-KTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPTV--VAVDGMSSFYWQDKMAQSCGGDAVSMQ-GAVVKSLVRLVVERPVVLFAAKSG 209
            KG+  G+V+EL+G  G+GKSEVL++ +A+ ++P  WL    GG      F D D + SILRL  LL +KIT     +V KTK                                  +IE  +  CL  L ++R +S  +LL +L  L   +     +  + +D +S+FYW D+     GG A  +    +V+ L  +  +  +V+ A K+ 
Sbjct:   30 KGISPGEVVELFGAEGTGKSEVLLHCLAKCILPPEWLTFNLGGLGAKVIFIDTDYKFSILRLVILLEKKITDIVDTEVDKTKPTS------------------------------DEIEVFITRCLKSLYLVRCNSSHQLLCTLHSLETNIAADSDIACIMIDSISAFYWIDRCNHGDGGSAHEINMNRIVEILQTIAKKYNLVVMATKAA 210          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: A0A210R1Z7_MIZYE (DNA repair protein XRCC2 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210R1Z7_MIZYE)

HSP 1 Score: 75.9 bits (185), Expect = 1.190e-12
Identity = 63/211 (29.86%), Postives = 98/211 (46.45%), Query Frame = 0
Query:   14 DVIELYGTSGSGKSEVLINVVAQHVMP----AW-LGGEEQTAYFFDNDGRLSILRLEQLLREKITT----NTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRPT--VVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLV----RLVVERPVVLFAAKSG 209
            DV+ELYG+ G GK+E+L+++    ++P     W  GG   +  F D D + SILRL  LL ++IT     N    +   +   F                             DIE ++ + L RL V++  S  +LLA+L  L   +   P   V+ +D +S+FYW D+     GG++V+ Q  V+  +V     LV +  +VL A KS 
Sbjct:   41 DVLELYGSEGCGKTEMLLHIACSLILPKTWRGWNFGGCGASLIFIDTDYKFSILRLVTLLEKRITHFVEHNQQVTLSENSEATFN------------------------PTSRDIEVVIKESLERLNVLQCKSSLQLLATLHSLEARISTNPDICVIMIDSISAFYWLDRCT---GGESVTAQETVMNLIVDILSHLVNDYNLVLLATKSA 224          
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Match: UPI001F07E576 (DNA repair protein XRCC2 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07E576)

HSP 1 Score: 75.5 bits (184), Expect = 1.480e-12
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 0
Query:   13 GDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTAYFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRXXXXXXXXXXXXXXXXXXXXXXXLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRFELQHRP--TVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKS----LVRLVVERPVVLFAA 206
            GDV+EL+GT G+GK+E+L +++ + ++P   GG      F D D    +LRL  +L  ++          +     GG+                         SD E  +  CL+RL V+  SS  +LL +L  L   +  RP  +++ +D +S+FYW D+   S GGD+V+ Q   ++     L RL+ +  + +FA+
Sbjct:   35 GDVVELHGTEGTGKTELLYHLLVRCLLPEDAGGLGVEVVFLDTDHHFDMLRLVTVLEHRLAQTIGAGSTEEGCESSGGQGQATAT-------------------SDPETRVRACLSRLSVVHCSSSAQLLLTLHFLETSMCSRPKLSLLIIDSISAFYWMDR---SGGGDSVAKQEVTLRKCSELLARLLRDYRISVFAS 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10654.426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE4.700e-8366.67Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI2.350e-6166.47Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
UPI00148A55192.340e-1432.96DNA repair protein XRCC2 n=1 Tax=Crassostrea gigas... [more]
UPI001CF6073B3.750e-1432.02DNA repair protein XRCC2 isoform X1 n=2 Tax=Thunnu... [more]
UPI001459174D6.110e-1431.40DNA repair protein XRCC2-like n=1 Tax=Pecten maxim... [more]
A0A6P8V3Q7_GYMAC5.110e-1330.39DNA repair protein XRCC2 isoform X1 n=6 Tax=Nototh... [more]
A0A8B8DE02_CRAVI5.610e-1331.58LOW QUALITY PROTEIN: DNA repair protein XRCC2-like... [more]
UPI001EE603991.120e-1229.38DNA repair protein XRCC2-like n=1 Tax=Haliotis rub... [more]
A0A210R1Z7_MIZYE1.190e-1229.86DNA repair protein XRCC2 n=2 Tax=Mizuhopecten yess... [more]
UPI001F07E5761.480e-1228.50DNA repair protein XRCC2 n=1 Tax=Hypomesus transpa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030547DNA repair protein XRCC2PANTHERPTHR46644FAMILY NOT NAMEDcoord: 10..208
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 9..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10654contigH-paniculata_contig10654:3800..8408 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10654.426.1mRNA_H-paniculata_contig10654.426.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10654 3800..8408 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10654.426.1 ID=prot_H-paniculata_contig10654.426.1|Name=mRNA_H-paniculata_contig10654.426.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
GAGASHEKGVGRGDVIELYGTSGSGKSEVLINVVAQHVMPAWLGGEEQTA
YFFDNDGRLSILRLEQLLREKITTNTTFQVKTKAAGGFGGRFAGAGGARA
GGTEGGTGAGMSAHLDSDIEGLLADCLARLRVIRPSSLFELLASLEVLRF
ELQHRPTVVAVDGMSSFYWQDKMAQSCGGDAVSMQGAVVKSLVRLVVERP
VVLFAAKSGRCTLRTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030547XRCC2
IPR027417P-loop_NTPase