prot_H-paniculata_contig10581.380.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10581.380.1
Unique Nameprot_H-paniculata_contig10581.380.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length357
Homology
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Match: A0A6H5JHZ8_9PHAE (RING-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ8_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 6.340e-48
Identity = 112/278 (40.29%), Postives = 156/278 (56.12%), Query Frame = 0
Query:    1 MPPPEFVLKPTPGTEEERLLHLKQVLLPAGSKSVGRSPETGIRNASVSRKHFEVVVEEEECKIRSVAKQNLSVLEIDGSPVGHEWMDFPIGARLELRTATQVSFKYVLEEFDLDTHGSSTPPSRETSNGASNGHRRPPVTERVSEDADDEEENMLHGMQCSFCMGIFVDPTEVDCKGRHLFCLECIKQILKS---RNDCPQCRMNISKQCKESIL--GSKSIYTTRHRVQPAGP-ETYQSQAIMFLKEMIKRAIEKRLCDYNDETEWRRRSGLEPLPP 272
            M  P +VLKP            K+VLLP G+K +GRS  TGI++  VSRKH EV VE + CK+R  AK   S ++ID + V  EW+ FP+G RLE       +F Y LE +   T  S+T  +  + N A+               A D+ + +   + C  C  +FVDP E+DCKG+HL+C  CI  ++K+   +N CP C  +IS   ++ IL  G K   +      P G  + YQSQA+  ++E+I+  IEKR+  Y+DETEWR+RSGLEPLPP
Sbjct:    1 MTTPLYVLKPISSG-------YKEVLLPPGTKFIGRSVATGIQSQVVSRKHIEVAVEGDVCKVRYCAKFK-SEVKIDNALVKKEWVPFPVGGRLEFLENPVEAFPYRLERYS--TASSATAAAEASGNTAAV--------------ACDQHQEITTRLACPMCYDLFVDPIELDCKGKHLYCHSCIYDLVKNESCQNKCPTCMTSISSSTRKKILQAGRKRGASGM----PVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 250          
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Match: D7FQD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD6_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.080e-22
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 0
Query:  163 CMGIFVDPTEVDCKGRHLFCLECIKQILKS---RNDCPQCRMNISKQCKESIL--GSKSIYTTRHRVQPAGP-ETYQSQAIMFLKEMIKRAIEKRLCDYNDETEWRRRSGLEPLPP 272
            C  +FVDP E+DCKG+HL+C  CI  ++K+   +N CP C  +IS   ++ IL  G K   +      P G  + YQSQA+  ++E+I+  IEKR+  Y+DETEWR+RSGLEPLPP
Sbjct:    2 CYDLFVDPIELDCKGKHLYCHSCIYDLVKNGSCQNKCPICMTSISSSTRKKILQAGRKRGASGM----PVGANKRYQSQAVGLVQEVIEWLIEKRMVKYDDETEWRKRSGLEPLPP 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10581.380.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHZ8_9PHAE6.340e-4840.29RING-type domain-containing protein (Fragment) n=1... [more]
D7FQD6_ECTSI2.080e-2247.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.200.20coord: 15..106
e-value: 8.4E-7
score: 30.8
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 159..206
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 137..260
e-value: 3.5E-13
score: 51.3
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 160..199
e-value: 3.4E-5
score: 23.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 160..200
score: 9.642
IPR008984SMAD/FHA domain superfamilySUPERFAMILY49879SMAD/FHA domaincoord: 22..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10581contigH-paniculata_contig10581:1886..7111 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10581.380.1mRNA_H-paniculata_contig10581.380.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10581 1869..7425 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10581.380.1 ID=prot_H-paniculata_contig10581.380.1|Name=mRNA_H-paniculata_contig10581.380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=357bp
MPPPEFVLKPTPGTEEERLLHLKQVLLPAGSKSVGRSPETGIRNASVSRK
HFEVVVEEEECKIRSVAKQNLSVLEIDGSPVGHEWMDFPIGARLELRTAT
QVSFKYVLEEFDLDTHGSSTPPSRETSNGASNGHRRPPVTERVSEDADDE
EENMLHGMQCSFCMGIFVDPTEVDCKGRHLFCLECIKQILKSRNDCPQCR
MNISKQCKESILGSKSIYTTRHRVQPAGPETYQSQAIMFLKEMIKRAIEK
RLCDYNDETEWRRRSGLEPLPPPSGTDNSDPKPEEQTGTGTTKQNSAVNG
GIVKEKSAGPGSSSGGGGDERPRKKAKLNHFAPATSSADDDVAANVIDLV
EDSDCD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR001841Znf_RING
IPR008984SMAD_FHA_dom_sf