prot_H-paniculata_contig1054.355.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1054.355.1
Unique Nameprot_H-paniculata_contig1054.355.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length667
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1054.355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 410..555
e-value: 3.2E-35
score: 124.1
coord: 556..666
e-value: 1.7E-22
score: 82.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 122..261
e-value: 2.5E-23
score: 84.9
coord: 262..409
e-value: 3.5E-34
score: 120.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 196..222
e-value: 0.0014
score: 16.6
coord: 379..407
e-value: 0.0015
score: 16.6
coord: 343..375
e-value: 4.0E-6
score: 24.6
coord: 452..484
e-value: 8.4E-6
score: 23.6
coord: 525..555
e-value: 4.8E-5
score: 21.3
coord: 306..334
e-value: 0.003
score: 15.6
coord: 268..297
e-value: 1.3E-4
score: 19.9
coord: 488..518
e-value: 4.0E-4
score: 18.4
coord: 414..441
e-value: 7.8E-6
score: 23.8
coord: 161..194
e-value: 4.3E-5
score: 21.4
coord: 599..627
e-value: 1.7E-4
score: 19.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 583..643
e-value: 5.2E-6
score: 26.4
coord: 159..206
e-value: 8.0E-8
score: 32.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 232..257
e-value: 0.3
score: 11.4
coord: 268..297
e-value: 1.9E-5
score: 24.6
coord: 306..334
e-value: 0.0015
score: 18.6
coord: 343..372
e-value: 6.0E-4
score: 19.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 523..557
score: 10.293
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 193..223
score: 8.287
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 158..192
score: 10.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 486..520
score: 10.326
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 595..629
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 449..483
score: 10.698
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 560..594
score: 9.46
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 375..409
score: 8.813
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 412..446
score: 8.407
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 303..337
score: 8.703
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 340..374
score: 10.611
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..263
score: 7.881
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 632..662
score: 6.007
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..300
score: 10.282
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 381..562
e-value: 5.9E-9
score: 35.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 471..662
coord: 156..333
coord: 303..482

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1054contigH-paniculata_contig1054:1722..3722 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1054.355.1mRNA_H-paniculata_contig1054.355.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1054 977..7893 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1054.355.1 ID=prot_H-paniculata_contig1054.355.1|Name=mRNA_H-paniculata_contig1054.355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=667bp
MTARYVARSMSRSAQGVRRLPCVGTRDVQCSPRQREVAACRRCAQAVSDL
AESRRLQTTMSSTASSSSSRASFEQKPWPSPDDASGSRYPTREQRQARAT
KGFVEGGRRAQRPRWLSPSVEDPLLSNLQGARDRGQWRLAEKLLEEALES
PDTRAGIGVDTYNMVLMILAKKAKWENVERIVKRMEEEGVVPNVNTYNTC
ITAYGNAKKCDQALLLFRELQADPALVANAHSYTAAITACGNSQQWEKSV
TILREMLLEDRSVRQGVVAYNSTIVACAKNSRWKEALGLLREMQAEGSPL
APTKGTYSRVIVACSSSGRWTEVVGLLREMQQAGSGITPDACIYSLVIKT
CGVAGEWEMAVGLLREMQVRGIAPDYNPWHAALAACGANARWEEALALLR
EMQSEGSLVSPYAVSYNTVITACSNARQWEVAVALLREMQAGSGSVVPNT
NSYNATITACGKARQWEQAMSLLREMQNEEIRVDPDVVSFNVAIQACGEC
GKADHAVTLLREMQTEGSRIGPTAVTYSVAIAACGKSGQWEQAIALLGEL
RERGGELSPNSANYGAAITACDVCGQWEQAVALLREMQRRGVVHDVYEYN
LVIRACGNNGQWRQAVGLLREIQSDGSSLRPDAVSYELAIKACRDSHQQA
LAEELETEMRARQEDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long