prot_H-paniculata_contig1001.20.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1001.20.1
Unique Nameprot_H-paniculata_contig1001.20.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length592
Homology
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BLAST of mRNA_H-paniculata_contig1001.20.1 vs. uniprot
Match: D8LTA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA9_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 3.110e-57
Identity = 100/173 (57.80%), Postives = 128/173 (73.99%), Query Frame = 0 
Query:   68 GSDQKCVKRALAVLDSKWTTDAEAKRAATFASEDAEMVDSVFMGGVYLPSDSFAVMVEYLDEGAAVRSLPCCRAWWRTMSALPPAAHLNCSHGD-IGWQDLVNQLKMIRSSNPRRLVRRITLGYGVKIGSLGNLASASGSL-ITHLDLTRSTGAKSLDFKAMAKQLPNLKGLA 238
            G + +C++R L++LDS+W  D + KR ATFASED  MVD+V MGG YLPSDSFA++VEYLD G AVRS P  ++WWRT+S LPPA+H++ + G  + W +LV QLK I++SNP R V R+TLG   K+GS  NL    G + +THLDLTRS GAK LDF A+AK LP L+GLA
Sbjct:   19 GGELRCMRRGLSLLDSRWKADVDRKRKATFASEDKGMVDAVLMGGFYLPSDSFAMVVEYLDHGTAVRSTPSSKSWWRTISGLPPASHIDTNIGKRLPWGELVTQLKTIKASNPLRAVARVTLGCRTKLGSFHNLGKVVGGVGLTHLDLTRSWGAKKLDFAALAKALPTLRGLA 191
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BLAST of mRNA_H-paniculata_contig1001.20.1 vs. uniprot
Match: D7FYV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 9.180e-29
Identity = 107/362 (29.56%), Postives = 153/362 (42.27%), Query Frame = 0 
Query:   68 GSDQKCVKRALAVLDSKWTTDAEAKRAATFASEDAEMVDSVFMGGVYLPSDSFAVMVEYLDEGAAVRSLPCCRAWWRTMSALPPAAHLNCSHGDIG----------------WQDLVNQLKMIRSSNPRRLVRRITLGYGVKIGSLGNLASASGSLITHLDLTRSTGAKSLDFKAMAKQLPNLKGLAVEE-TFYQHEFVHGWFRGLADLVREVSLESLRLNVHEFSCSLNTDPRSKAKWQSQDVSRITDNVLEDLANLSRSPQEVLIAGTHRGIVTVMSFTVLGGIPGMGTNAQRDGEGANASPRSPPSSLRKLWLSGPSDGPTITEGMAALGAGMPKLQELVVDRLNVSEEGWKKFASARI 412
            G    C+KRA A+L+S+W+ DAE        +   E   +V  G  +L  + F  +V +LD    ++S    +AWWR  +A     +L       G                W D++  L+ I+++NPRR VRR+T     K+GSL NL+SA+  L+TH+D +RS   + +DF  +  QLP L+GLAV+  ++Y       W + LA L+  VSLESLRL                                                  H G+    S  VL G                        SL +   SG S    I EGMA LGA  P+L+ L V  + V+  GW+KF  AR+
Sbjct:   43 GPQHVCLKRAFALLESRWSLDAEEGTYQLPTTGHHE--PAVPFGESFLSPEVFVSVVAFLDVPQTMQSARTSKAWWRNAAAHVDLTNLRPRSPIYGTSLWGGPSVARPRGLKWNDILIHLRHIKNTNPRRAVRRLTFNSSTKLGSLSNLSSATTGLLTHIDFSRSR--RDVDFDQLGVQLPGLRGLAVQSLSYYTAARDQAWTKSLAKLISTVSLESLRLR-------------------------------------------------HTGLDD-SSLAVLAGAG---------------------DSLLRCTFSGGSA--IIEEGMAVLGAAAPRLETLAVHHVRVTNSGWEKFGKARL 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1001.20.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTA9_ECTSI3.110e-5757.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYV1_ECTSI9.180e-2929.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 135..419
e-value: 3.8E-8
score: 34.0
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 141..409

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1001contigH-paniculata_contig1001:14607..20420 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1001.20.1mRNA_H-paniculata_contig1001.20.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1001 14389..21099 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1001.20.1 ID=prot_H-paniculata_contig1001.20.1|Name=mRNA_H-paniculata_contig1001.20.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=592bp
MTPPTNNKEEDKAPSTRGFGEKVADIGDAPATASTTACAATSFKSLDEEH
ASATMAFEAGDVQRLSRGSDQKCVKRALAVLDSKWTTDAEAKRAATFASE
DAEMVDSVFMGGVYLPSDSFAVMVEYLDEGAAVRSLPCCRAWWRTMSALP
PAAHLNCSHGDIGWQDLVNQLKMIRSSNPRRLVRRITLGYGVKIGSLGNL
ASASGSLITHLDLTRSTGAKSLDFKAMAKQLPNLKGLAVEETFYQHEFVH
GWFRGLADLVREVSLESLRLNVHEFSCSLNTDPRSKAKWQSQDVSRITDN
VLEDLANLSRSPQEVLIAGTHRGIVTVMSFTVLGGIPGMGTNAQRDGEGA
NASPRSPPSSLRKLWLSGPSDGPTITEGMAALGAGMPKLQELVVDRLNVS
EEGWKKFASARIEAAAAAPAAADDDSDYTASTSARDAGSDAGHSIETATP
TLRRIRYVTHDPRFLPSAATRNLLEKTVSKNVTMYVNARGPAFVAGVKAT
ASGTSSTSGAGSASGIVNGCALGEAGPGSVSGSGGDPMTLPSTVVDCEGA
LVEIDNGGGVPEDRAGAASKKKLHVLHNSWVFTSNLDAADL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf