prot_H-paniculata_contig10004.16.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig10004.16.1
Unique Nameprot_H-paniculata_contig10004.16.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length615
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10004.16.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 44..289
e-value: 6.5E-13
score: 50.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 613..614
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..594
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 595..612
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 73..375

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10004contigH-paniculata_contig10004:3958..6915 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10004.16.1mRNA_H-paniculata_contig10004.16.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig10004 909..7364 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig10004.16.1 ID=prot_H-paniculata_contig10004.16.1|Name=mRNA_H-paniculata_contig10004.16.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=615bp
MRRSPAARRTTIVPTNFSSCQTSLCRSLLRSQPPLLVVLLLLCNQAALLT
NGQQQSDNIAGSSCVAPTDPRGLGVYSSGLYVLDAGKGAVLEYDSEDGQL
IRELTTEGSVGQGADGGLKVDRGFVLVASGESTVEKIAISGSEAGNIVLG
FPSSASSSNDGDQLADVTVDTERDEVYVSNYGEGGVKVYNGTTGEYKRDI
LGDTMAMGIAFGPNDVLYVSIPEDNTVQRFLRSQNDAENFTLIDAFINGG
SGSRTRQGPWGIAINPDDYLIYVCWEDSKELTEYSQSGQELNWWEPGLEG
SDDDDDDVDDGAVTAKSESSSSASSAVGLSPRFVAVDSAGDVYVSAYAAS
GTGDVFKYDGGSKKEIGRLSTCFGAGTTTTQTQSPAETPSPSPSVSVAPK
TDSPTTRARTAPPTSAMTSARTPTPSAAVSPRPTVSHPTTVEPTVSATTS
ATTSTPSATSSPRSTVPPIAMVESTVSPRTSPPGTSLSPTTTEPPTSAVI
PANTTAPSAAVSPHPTIRSTATVQPTVSPKTPAPSTLARTATPAPATADA
PPTANPSTVKALPITPAPSGSDRAAGELEASGANRWGQKPAGRSMVAGGV
AMIVVMLCQFMLSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf