mRNA_H-paniculata_contig9673.17354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: D7G6R4_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R4_ECTSI) HSP 1 Score: 271 bits (692), Expect = 9.920e-87 Identity = 141/236 (59.75%), Postives = 177/236 (75.00%), Query Frame = 1 Query: 22 GLGKIYLCNDEHVLVTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKP--GAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGE-SRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGTFPSILDSESLGFALGGLEACEAS 720
G GK+YLC D VLVTRYH++CVVGK E G+ DN GF GLLHR+GVMRDK G IYGVT+RVGRY KG ADM+DD+LFN G+ K SILVLGR G+GKTTL+RDMCRKLS+ ++VVIVD+ +DIGG VVPH AIGE SRR+M+ Q QQH V++QA R+H+P+T+ VDEIS+Q+++EAC+ +K RG+R++ GAVG P +LDS +G ALGGLE + S
Sbjct: 15 GRGKVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGKIYGVTIRVGRYAKGMADMVDDLLFNHHTATGSGKRASQAPASILVLGRHGAGKTTLVRDMCRKLSSHETVVIVDTRSDIGGAGVVPHRRAIGEESRRVMVPQGM---QQHEVILQAYRNHSPQTIVVDEISSQLDIEACMAVKARGIRVVAGAVGDLPYVLDSPEIGAALGGLEDIQRS 247
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A6H5JW61_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE) HSP 1 Score: 273 bits (697), Expect = 3.660e-80 Identity = 142/234 (60.68%), Postives = 176/234 (75.21%), Query Frame = 1 Query: 22 GLGKIYLCNDEHVLVTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGE-SRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGTFPSILDSESLGFALGGLEACEAS 720
G GK+YLC D VLVTRYH++CVVGK E G+ DN GF GLLHR+GVMRDK G IYGVT+RVGRY KG ADM+DD+LFN + Q SILVLGR G+GKTTL+RDMCRKLS+ ++VVIVD+ +DIGG VVPH AIGE SRR+M+ Q QQH V++QA R+HNP+T+ VDEIS+Q+++EAC+ +K RGVR++ GAVG P +LDS +G ALGGLE + S
Sbjct: 1622 GRGKVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGKIYGVTIRVGRYAKGMADMVDDLLFNHHVAKKRASQAPA-SILVLGRHGAGKTTLVRDMCRKLSSHETVVIVDTRSDIGGAGVVPHRGAIGEESRRVMVPQ---GTQQHEVILQAYRNHNPQTVVVDEISSQLDVEACMAVKSRGVRIVAGAVGDLPFVLDSPEIGAALGGLEDIQRS 1851
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A6H5L2P2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE) HSP 1 Score: 212 bits (540), Expect = 1.040e-59 Identity = 114/243 (46.91%), Postives = 162/243 (66.67%), Query Frame = 1 Query: 22 GLGKIYLCNDEHVLVTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGG-IYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGTFPSILDSESLGFALGGLEACEASDGQSSPGSA 747
G GK++LC+D+ V+VT+ HI VVG+ + E DN G PG LHR+ VMR + I+GVTLR+GRY G A ++DDVLF+ + KP R S+LVLG+ GSGKTT++RD+CRK+S Q+VVIVD++N+I GD +PH AIG+SRR+M+ +K QH VM +AL++H P+T+ VDE+S + E AC+ IK RGVR++ A G S+L++ L +GG + D +S +A
Sbjct: 559 GRGKLFLCSDKSVVVTKEHIDMVVGRLDLEDKFAGDNRAGVPGQLHRISVMRSREARRIFGVTLRIGRYFSGSASLVDDVLFHVQGSPDKPE--RAASVLVLGKPGSGKTTVLRDICRKISQEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVP---NKAGQHNVMKEALQNHTPQTIVVDEVSDKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNA 796
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: D7FII7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.010e-55 Identity = 102/213 (47.89%), Postives = 142/213 (66.67%), Query Frame = 1 Query: 88 VVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGG-IYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGTFPSILDSESLGFALGGLEACEASD 723
VVG+ + EG DN G PG LHR+ VMR + G I+GVTLR+GRY G A ++DD+LF+ + KP R S+LVLG+ G GKTT++RD+CRK+S Q+VVIVD++N+I GD +PH AIG+SRR+M+ DK QH VM +AL++H P+T+ VDE+S + E AC+ IK RGVR++ A G S+L++ L +GG + D
Sbjct: 2 VVGRLDLEGKFAGDNRAGVPGQLHRISVMRGREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQGSPDKPE--RAASVLVLGKPGCGKTTVLRDICRKISQEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVP---DKTDQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGD 209
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A2U2S9G3_9CHLR (AAA family ATPase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A2U2S9G3_9CHLR) HSP 1 Score: 147 bits (371), Expect = 2.540e-37 Identity = 95/233 (40.77%), Postives = 140/233 (60.09%), Query Frame = 1 Query: 28 GKIYLCNDEHVLVTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGT-FPSILDSESLGFALGGLEACEASD 723
G+I L + E +TR I V +R G D DN G LHR+ +R++ GGI G+TLRVGR V G D++ D++ +GK SIL+LGR G GKTTL+R+ R L+ ++ VVIVD++N+IGGD VPH A+G +RR+ + ++ QH VM++A+ +HNP + +DEI ++E A I +RGV+LI A G ++L + +L +GG+EA SD
Sbjct: 53 GEITLRDTE---ITREEIDYVD---QRVGEFDADNRAGIERTLHRISAIRNRRGGIVGLTLRVGRAVYGTIDIIQDIIESGK------------SILILGRPGVGKTTLLREAARILAETRRVVIVDTSNEIGGDGDVPHP-AVGRARRMQV---REPMLQHEVMIEAVENHNPEVIVIDEIGRELEALAARTIAERGVQLIGTAHGNALENLLQNPTLSDLVGGIEAVTLSD 263
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A399ZQA4_9CHLR (AAA family ATPase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399ZQA4_9CHLR) HSP 1 Score: 147 bits (370), Expect = 2.870e-37 Identity = 90/221 (40.72%), Postives = 135/221 (61.09%), Query Frame = 1 Query: 64 VTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVG-TFPSILDSESLGFALGGLEACEASD 723
+TR + VV ER G D DN G LHR+ +R++ G + G+TLRVGR V G D++ D++ +GK S+L+LGR G GKTTL+R+ R L+ S+ V+IVD++N+IGGD VPH A+G++RR+ + + QH VM++A+ +HNP + +DEI ++E A I +RGV+LI A G T ++L + +L +GG+EA SD
Sbjct: 61 LTRAELDHVV---ERVGNFDADNRAGIERTLHRISAIRNRRGAVVGLTLRVGRAVYGTVDIIQDIIESGK------------SVLILGRPGVGKTTLLRESARILAESKRVIIVDTSNEIGGDGDVPHP-AVGKARRMQV---KVPTHQHEVMIEAVENHNPEVIVIDEIGRELEALAARTIAERGVQLIGTAHGQTLDNLLLNPTLSDLVGGIEAVTLSD 262
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: K3WXT2_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXT2_GLOUD) HSP 1 Score: 149 bits (375), Expect = 4.530e-37 Identity = 92/225 (40.89%), Postives = 136/225 (60.44%), Query Frame = 1 Query: 52 EHVLVTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQ-SVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVGTFPSILDSESLGFALGGLEACEASD 723
E +V+R I+ V+ K E + DN G LHR+ VMR KTG IYG+T+RVGR + A++L DVL + R SIL+LGR GSGKTTLIRD+ R +S +Q +V I+D++N+IGGD +VPH +G +RR+M+ +QQ VM++ +++H TL +DEI + E+ A ++QRG RLI G F S++ ++ L +GG++ D
Sbjct: 714 EGEVVSRADINEVLEKLGGEHKIGFDNRAGIDRQLHRISVMRSKTGEIYGLTMRVGRALAHAANLLTDVLMSAAH--------RDKSILLLGRPGSGKTTLIRDIARSVSDTQENVCIIDTSNEIGGDGLVPHE-CVGWARRMMVP---SLEQQANVMIECVQNHTVETLIIDEIGRKAEVNAAGTVRQRGPRLIASGHGDFRSLIRNQDLRGLIGGVQQVTVGD 926
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: H5SEQ6_9CHLR (Single-stranded nucleic acid binding R3H n=1 Tax=uncultured Chloroflexi bacterium TaxID=166587 RepID=H5SEQ6_9CHLR) HSP 1 Score: 146 bits (368), Expect = 5.050e-37 Identity = 92/221 (41.63%), Postives = 136/221 (61.54%), Query Frame = 1 Query: 64 VTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVG-TFPSILDSESLGFALGGLEACEASD 723
VTR I V R G D DN G LHR+ +R++ G I G+TLRVGR V G +D+++D++ +GK SIL+LGR G GKTTL+R+ R L+ ++ V+IVD++N+IGGD VPH AIG++RR+ + ++ QH VM++A+ +HNP + +DEI ++E A I +RGV+LI A G T ++L + +L +GG+EA SD
Sbjct: 61 VTREEIEYVDA---RVGEFDADNRAGIERTLHRISAIRNRRGHIVGLTLRVGRAVYGTSDIIEDIITSGK------------SILLLGRPGVGKTTLLREAARILAETRRVIIVDTSNEIGGDGDVPHP-AIGKARRMQV---REPMLQHEVMIEAVENHNPEVIVIDEIGRELEAAAARTIAERGVQLIGTAHGNTLENLLLNPTLSDLVGGIEAVTLSD 262
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A3M1I9X3_9CHLR (AAA family ATPase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3M1I9X3_9CHLR) HSP 1 Score: 146 bits (368), Expect = 5.120e-37 Identity = 91/221 (41.18%), Postives = 136/221 (61.54%), Query Frame = 1 Query: 64 VTRYHISCVVGKFEREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVG-TFPSILDSESLGFALGGLEACEASD 723
VTR I VV ER G D DN G LHR+ +R++ G I G+T RVGR V G D+++D++ +GK SIL++GR G GKTT++R+ R L+ S+ V+IVD++N+IGGD VPH A+G++RR+ + ++ QH VM++A+ +HNP + +DEI ++E A I +RGV+LI A G T ++L + +L +GG+EA SD
Sbjct: 61 VTREDIDYVV---ERIGEFDADNRAGLERTLHRISAIRNRRGHIVGLTCRVGRAVYGTIDIIEDIIHSGK------------SILLVGRPGVGKTTMLREAARILAESRRVIIVDTSNEIGGDGDVPHP-AVGKARRMQV---REPMLQHEVMIEAVENHNPEVIIIDEIGRELEAAAARTIAERGVQLIGTAHGNTLENLLLNPTLSDLVGGIEAVTLSD 262
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Match: A0A661W777_9CHLR (AAA family ATPase n=2 Tax=Bacteria TaxID=2 RepID=A0A661W777_9CHLR) HSP 1 Score: 146 bits (368), Expect = 5.250e-37 Identity = 90/228 (39.47%), Postives = 140/228 (61.40%), Query Frame = 1 Query: 49 DEHVLVTRYHISCVVGKF--EREGVLDHDNATGFPGLLHRLGVMRDKTGGIYGVTLRVGRYVKGCADMLDDVLFNGKPGAAKPGQLRCPSILVLGRQGSGKTTLIRDMCRKLSASQSVVIVDSANDIGGDSVVPHSVAIGESRRIMLDQEQDKDQQHRVMMQALRSHNPRTLAVDEISTQIELEACVRIKQRGVRLIVGAVG-TFPSILDSESLGFALGGLEACEASD 723
DE V +++ ++ KF R G D DN G P LHR+ +R++ G I G+T RVGR V G D++ D++ +G+ S+L+LGR G GKTT++R+ R L+ ++ VVIVD++N+I GD VPH AIG++RR+ + Q +QQH VM++A+ +HNP + +DEI ++E +A I +RGV+LI A G T ++L + +L +GG+E+ SD
Sbjct: 51 DEEVALSKNEVTKSDIKFVVNRIGNFDADNRAGLPRTLHRIAAIRNRIGKIVGLTCRVGRAVYGTTDIVKDLIESGR------------SLLILGRPGVGKTTMLREAARILAENKRVVIVDTSNEIAGDGDVPHP-AIGKARRMQVAQ---PNQQHEVMIEAVENHNPEVIVIDEIGRELEAQAARTIAERGVQLIGTAHGNTLDNLLINPTLSDLVGGIESVTLSD 262 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9673.17354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9673.17354.1 >prot_H-paniculata_contig9673.17354.1 ID=prot_H-paniculata_contig9673.17354.1|Name=mRNA_H-paniculata_contig9673.17354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp MGKNTHAGLGKIYLCNDEHVLVTRYHISCVVGKFEREGVLDHDNATGFPGback to top mRNA from alignment at H-paniculata_contig9673:389..8521+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9673.17354.1 ID=mRNA_H-paniculata_contig9673.17354.1|Name=mRNA_H-paniculata_contig9673.17354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8133bp|location=Sequence derived from alignment at H-paniculata_contig9673:389..8521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9673:389..8521+ >mRNA_H-paniculata_contig9673.17354.1 ID=mRNA_H-paniculata_contig9673.17354.1|Name=mRNA_H-paniculata_contig9673.17354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig9673:389..8521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |