mRNA_H-paniculata_contig9663.17350.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig9663.17350.1
Unique Name	mRNA_H-paniculata_contig9663.17350.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: D8LKU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU7_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 4.630e-81
Identity = 130/196 (66.33%), Postives = 148/196 (75.51%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCD----EERSRGCE 576
            VGGLCGHQAG+TCITAKGDG HFISN KDQT+KLWD+R+ML PK+ +M  AA +P W  +    +  A   RP    +S+RA+D SVKTFHGHKVLQTLIRCYFSP HTTGQRFVMSGS+DG VC+WDILTG MV SLSWH   TRDVSWHP LPL+ASFSWD +VGLW YS  A D    K      E+R+RG E
Sbjct:  426 VGGLCGHQAGITCITAKGDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKAAHIPHWDYRHMTMSLPAL--RP---IKSKRASDESVKTFHGHKVLQTLIRCYFSPTHTTGQRFVMSGSADGSVCIWDILTGNMVDSLSWHTGNTRDVSWHPHLPLIASFSWDAAVGLWSYSGGARDENTRKSAGRGVEDRNRGVE 616

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A6H5K2A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A5_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 8.360e-49
Identity = 88/153 (57.52%), Postives = 100/153 (65.36%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQ-----------------CCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVR 408
            VGGLCGHQAG+TCITAKGDG HFISN KDQT+KLWD+R+ML PK+ +M  A     W                    C                + +R +D SVKTFHGHKVLQTLIRCYFSP HTTGQRFVMSGS+DG VC+WD+LTG MVR
Sbjct:  490 VGGLCGHQAGITCITAKGDGRHFISNSKDQTMKLWDMRRMLDPKDDKMKKATHTSLWCPSYFVGITCLCVCVVVYVHCWDYRHMPMSFTALRPKKGKRTSDESVKTFHGHKVLQTLIRCYFSPAHTTGQRFVMSGSADGSVCIWDVLTGNMVR 642

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A7S0N7W5_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N7W5_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 1.190e-46
Identity = 84/171 (49.12%), Postives = 110/171 (64.33%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGY 513
            VG L GH  G+T I +KGDG H ISNGKDQ ++LWDIRKML+P E R      +  W       + R C   PG     R   D SV+ + GH+VL+TLIRCYFSP HTTGQR++ +GS +G V ++D++TG+ +R L  H  T RD+SWHP LPL+ S SWD ++  W +
Sbjct:  250 VGVLLGHTEGITHIDSKGDGLHLISNGKDQAVRLWDIRKMLNPSEAR----EALQRWHFPQFHWDYR-CMDYPGVGLAIRHPRDCSVQAYRGHRVLETLIRCYFSPMHTTGQRYIYTGSHEGSVHMYDVVTGKEMRKLDAHISTVRDMSWHPTLPLLVSVSWDGTIRRWDH 415

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: M8AS64_TRIUA (LEC14B protein n=4 Tax=Triticinae TaxID=1648030 RepID=M8AS64_TRIUA)

HSP 1 Score: 160 bits (406), Expect = 3.280e-46
Identity = 81/190 (42.63%), Postives = 112/190 (58.95%), Query Frame = 1

Query:    4 GGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKM---LHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEERS 564
            G L GH  G+TCI ++GDG + ISN KDQT+KLWDIRKM   +  ++ R+ D      W  +            P  +   +   D S+ T+ GH VL+TLIRCYFSP H+TGQR++ +GSSD  V ++D++TG  V+ LSWH    RD +WHP+ P + S SWD  +  W  S    D +   CDE+R+
Sbjct:   36 GVLTGHLDGITCIDSRGDGRYLISNCKDQTIKLWDIRKMSATVKGRQPRLYD------WDYRWMSF--------PSDARYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSVHIYDVVTGATVKKLSWHGSIIRDCTWHPYRPTLVSSSWDGYLARWEASGNNEDPSVLTCDEQRT 211

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A1Y1IN90_KLENI (WD-40 repeat protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN90_KLENI)

HSP 1 Score: 163 bits (412), Expect = 7.000e-46
Identity = 81/178 (45.51%), Postives = 119/178 (66.85%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAA---DASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAA 525
            VG L GH  G+T + +KGDG + ++N KDQ++KLWDIR+M +P +   +D   VP        A R   +R   HS ++ +     D S++T+ GH+VLQTL+R YFSP  +TGQR++ +GS+DG V ++D+++GE VR LS H  T RDV+WHP LPL+A+ SWD +VG+W +  A+
Sbjct:  162 VGVLVGHSEGITHVNSKGDGRYLLTNSKDQSIKLWDIRRMTNPSK---IDKGHVP--------ARRYWDYRWEDHSPRNHQGPCKNDTSLQTYRGHRVLQTLVRAYFSPVESTGQRYIYTGSTDGTVYIYDVVSGETVRKLSGHFATVRDVAWHPTLPLLATSSWDCTVGVWEHHRAS 328

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A0D2JNZ7_9CHLO (Putative LEC14B like protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JNZ7_9CHLO)

HSP 1 Score: 159 bits (402), Expect = 1.170e-45
Identity = 88/192 (45.83%), Postives = 114/192 (59.38%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSS---QSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEERSR 567
            VG L GH  G+T ++A+GDG + +SN KDQT +LWD+R+M  P+E R +  A  P  S           +R  G+ +   + +   D+SV+T+ GHKVLQTLIR YFSP H+TGQR+V SGSS G V VWD++T   V  L  HR+  RD SWHP  P + S SWD +V  W   AAAP    A   E   R
Sbjct:   27 VGILLGHTEGLTHLSARGDGRYLLSNAKDQTARLWDVRRMRTPQEARSLPPASFPRQSFD---------YRWQGYPAAGYEVKHPHDSSVQTYRGHKVLQTLIRAYFSPAHSTGQRYVYSGSSCGSVFVWDLVTARQVAVLHHHREIVRDCSWHPHEPELVSVSWDGTVVQW--DAAAPGAGPADSAEAALR 207

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A3B5XWQ5_WHEAT (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A3B5XWQ5_WHEAT)

HSP 1 Score: 164 bits (415), Expect = 2.000e-45
Identity = 82/190 (43.16%), Postives = 113/190 (59.47%), Query Frame = 1

Query:    4 GGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKM---LHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEERS 564
            G L GH  G+TCI ++GDG + ISN KDQT+KLWDIRKM   +  ++ R+ D      W  +            P H+   +   D S+ T+ GH VL+TLIRCYFSP H+TGQR++ +GSSD  V ++D++TG  V+ LSWH    RD +WHP+ P + S SWD  +  W  S    D +   CDE+R+
Sbjct:  234 GVLTGHLDGITCIDSRGDGRYLISNCKDQTIKLWDIRKMSATVKGRQPRLYD------WDYRWMSF--------PSHARYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSVHIYDVVTGATVKKLSWHGSIIRDCTWHPYRPTLVSSSWDGYLARWEASGNNEDPSVLTCDEQRT 409

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A3L6D6G0_MAIZE (Uncharacterized protein n=2 Tax=Zea mays TaxID=4577 RepID=A0A3L6D6G0_MAIZE)

HSP 1 Score: 156 bits (394), Expect = 1.220e-44
Identity = 82/184 (44.57%), Postives = 105/184 (57.07%), Query Frame = 1

Query:   10 LCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEER 561
            L GH  GVT I ++GDG +FISN KDQ +KLWDIRKM      R V    +  W  +            P  +   +   D SV T+ GH VL+TLIRCYFSP H+TGQR++ +GSSD  V ++D++TGE V+ LSWH    RD +WHP+ P + S SWD  V  W  S    D +    DE R
Sbjct:   20 LTGHLDGVTFIDSRGDGRYFISNCKDQRIKLWDIRKMSSVVRSRPVS---LVDWDYRWMPF--------PSEAHNLKHPGDQSVATYRGHSVLRTLIRCYFSPVHSTGQRYIYTGSSDKSVHIYDVVTGEAVKRLSWHGSIIRDCTWHPYYPTLVSSSWDGFVARWEASGDDDDHSVLVADEMR 192

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: A0A3B5ZRJ7_WHEAT (Uncharacterized protein n=15 Tax=Triticeae TaxID=147389 RepID=A0A3B5ZRJ7_WHEAT)

HSP 1 Score: 162 bits (411), Expect = 2.010e-44
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 1

Query:    4 GGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKM---LHPKEKRMVDAAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEERS 564
            G L GH  G+TCI ++GDG + ISN KDQT+KLWD+R+M   +  ++ R+ D      W  +            P H+   +   D S+ T+ GH VL+TLIRCYFSP H+TGQR++ +GSSD  V ++D++TG  V+ LSWH    RD +WHP+ P + S SWD  +  W  S    D +   CDE+R+
Sbjct:  284 GVLTGHLDGITCIDSRGDGRYLISNCKDQTIKLWDVRRMSATVKGRQPRLYD------WDYRWMSF--------PSHARYYKHPNDLSLATYRGHSVLRTLIRCYFSPMHSTGQRYIYTGSSDDSVHIYDVVTGATVKKLSWHGSIIRDCTWHPYRPTLVSSSWDGYLARWEASGDNEDPSVLTCDEQRT 459

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BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Match: UPI0013905153 (DDB1- and CUL4-associated factor 11 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013905153)

HSP 1 Score: 164 bits (414), Expect = 2.790e-44
Identity = 86/179 (48.04%), Postives = 105/179 (58.66%), Query Frame = 1

Query:    1 VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVDAAVVPT-WSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLIRCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSWHPFLPLVASFSWDHSVGLWGYSAAAPDV 534
            VG L GH  G+TCI +KGDG H I+N KDQT+KLWDIRK            AV    W  +  KA R++   R         A D S+ T+ GH VL TLIRCYFSP HTTGQR++ +G S G V ++DILTGE+   L+ H    RDVSWHP+   + S SWD  VGLW Y  +   V
Sbjct:  347 VGVLSGHADGITCIASKGDGRHLITNSKDQTIKLWDIRKFSDNDGIVATKRAVASQRWDYRWQKAPRKSLKPRT-------LAGDVSLMTYRGHSVLNTLIRCYFSPDHTTGQRYIYTGCSTGSVVIYDILTGEVKARLTGHNSCVRDVSWHPYENKIVSSSWDGMVGLWQYECSDDPV 518

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9663.17350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

0


Match Name	E-value	Identity	Description
D8LKU7_ECTSI	4.630e-81	66.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K2A5_9PHAE	8.360e-49	57.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S0N7W5_9CHLO	1.190e-46	49.12	Hypothetical protein n=1 Tax=Pyramimonas obovata T...	[more]
M8AS64_TRIUA	3.280e-46	42.63	LEC14B protein n=4 Tax=Triticinae TaxID=1648030 Re...	[more]
A0A1Y1IN90_KLENI	7.000e-46	45.51	WD-40 repeat protein n=1 Tax=Klebsormidium nitens ...	[more]
A0A0D2JNZ7_9CHLO	1.170e-45	45.83	Putative LEC14B like protein n=1 Tax=Monoraphidium...	[more]
A0A3B5XWQ5_WHEAT	2.000e-45	43.16	Uncharacterized protein n=4 Tax=Triticinae TaxID=1...	[more]
A0A3L6D6G0_MAIZE	1.220e-44	44.57	Uncharacterized protein n=2 Tax=Zea mays TaxID=457...	[more]
A0A3B5ZRJ7_WHEAT	2.010e-44	42.11	Uncharacterized protein n=15 Tax=Triticeae TaxID=1...	[more]
UPI0013905153	2.790e-44	48.04	DDB1- and CUL4-associated factor 11 n=1 Tax=Nemato...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	261.2
Seed ortholog evalue	4e-67
Seed eggNOG ortholog	2880.D8LKU7
Preferred name	DCAF11
KEGG ko	ko:K10770,ko:K11801
Hectar predicted targeting category	other localisation
GOs	GO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	WD repeat-containing protein
EggNOG OGs	KOG0266@1,KOG0266@2759
Ec32 ortholog description	G-protein beta WD-40 repeat
Ec32 ortholog	Ec-11_005630.1
EC	2.1.1.229
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko03016,ko04121
Exons	4
Model size	594
Cds size	594
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9663.17350.1	prot_H-paniculata_contig9663.17350.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig9663 3300..9290 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931198.1938818-CDS-H-paniculata_contig9663:3299..3491	1622931198.1938818-CDS-H-paniculata_contig9663:3299..3491	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 3300..3491 -
1691481634.4529552-CDS-H-paniculata_contig9663:3299..3491	1691481634.4529552-CDS-H-paniculata_contig9663:3299..3491	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 3300..3491 -
1622931198.2072792-CDS-H-paniculata_contig9663:6535..6599	1622931198.2072792-CDS-H-paniculata_contig9663:6535..6599	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 6536..6599 -
1691481634.4673972-CDS-H-paniculata_contig9663:6535..6599	1691481634.4673972-CDS-H-paniculata_contig9663:6535..6599	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 6536..6599 -
1622931198.2234616-CDS-H-paniculata_contig9663:6942..7110	1622931198.2234616-CDS-H-paniculata_contig9663:6942..7110	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 6943..7110 -
1691481634.477949-CDS-H-paniculata_contig9663:6942..7110	1691481634.477949-CDS-H-paniculata_contig9663:6942..7110	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 6943..7110 -
1622931198.2405314-CDS-H-paniculata_contig9663:9120..9290	1622931198.2405314-CDS-H-paniculata_contig9663:9120..9290	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 9121..9290 -
1691481634.4888837-CDS-H-paniculata_contig9663:9120..9290	1691481634.4888837-CDS-H-paniculata_contig9663:9120..9290	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9663 9121..9290 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9663:3300..9290-
coding sequence from alignment at H-paniculata_contig9663:3300..9290-

protein sequence of mRNA_H-paniculata_contig9663.17350.1

>prot_H-paniculata_contig9663.17350.1 ID=prot_H-paniculata_contig9663.17350.1|Name=mRNA_H-paniculata_contig9663.17350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
VGGLCGHQAGVTCITAKGDGHHFISNGKDQTLKLWDIRKMLHPKEKRMVD
AAVVPTWSNQCCKANRRACHRRPGHSSQSRRAADASVKTFHGHKVLQTLI
RCYFSPQHTTGQRFVMSGSSDGRVCVWDILTGEMVRSLSWHRDTTRDVSW
HPFLPLVASFSWDHSVGLWGYSAAAPDVAGAKCDEERSRGCELPSVL*

mRNA from alignment at H-paniculata_contig9663:3300..9290-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9663.17350.1 ID=mRNA_H-paniculata_contig9663.17350.1|Name=mRNA_H-paniculata_contig9663.17350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5991bp|location=Sequence derived from alignment at H-paniculata_contig9663:3300..9290- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGTGGGCTTTGCGGGCACCAGGCGGGCGTGACGTGCATAACGGCCAA
GGGGGATGGGCATCACTTCATATCGAACGGCAAAGATCAGACTCTCAAGC
TATGGGACATCCGCAAGATGCTGCATCCCAAGGAGAAGCGCATGGTTGAT
GCCGCGGTTGTGCCAACATGGTGAGCGAGCAATGAAAACGAATCACACAA
GGAAACTAAACTCGCTGGTTTTTAAGATTCCGAAAAAAAGGATAAGGCAG
TAGAAATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTTTCGTTCATTTCAGTCGTTCGTCTTCTCTCTTCATATACGCTTATTA
GGGATGTCAAACCATACAAAAAAAGAGATCATAGATATGCCTTTTTTTCT
TTTGAAGTTATGGCGGTTTATCACCCTGATTCGTGGTCTTGTGATTTTGT
TTGACTTACCTTACCGCCGACAAGGACTGACCTGGCCAGTCCCCCTAGCT
ATTAATAGTGTGCAACTTGACTTGGTCATGATCCATCTGCAATCCTTATT
TGTGGCTGAAAGGGGGGGCTGTATATAGCACGGGAATGCGGGACGAGAGA
TATTTCCCATATTTTGTAAAAGTAACGGGATGTGATGTCTCTTGAGGACC
TCGTTGTCCCGTTGTCCCGTTGTCCCGTTGTCCCGTTGTCCCGTGACCAA
CCCCTGGTGTTAAACGGCCTATCTTTAGACACACGAGTATATACATGGAG
AGAAAAAGTCTCGCAATAGGGATATTCACCTGTATATACTATGTTGTGGT
ACTTGGTTTGTCGATTTGTTCAATGGCTCTTGAAGCCAAGATCCCTTTTG
AGTGGCACACTAAATACGGACGAGTTAGCAGCTAGCCACCGCCGCTGTTA
CAGCGTGAATTAACCGTCTAATACTAACCTGGGGACTGACTCCACGTCCC
ACCGGCACAATTCTGGCCCTGCGTGTGTTGGACAGGTGAGGTTGTTTGGC
AGTGAGTCGACGCAGCTCCGCAAACATGGGCGTGCTCTTTTGGGCTTTTG
AGCTATTGCTACAAGCAGATTGTTGAGATAAAATGAGAATAGCAAAAAGA
CAGCTGCCACACATATGTATATATATATATATATATATGCTTTGTTTCTC
GTACGCAGTCCGTGTTGTGTCGTCAACTTCCGCAATCACAATTCCACGTC
AAGATTCGATTTTTGGAATTCACTGCACTACAATATGGAAAAATTGTTCC
GAAATGACGGTCACCATTCTGATCTCTACTCCCTCTGGGTGGTAATGAAC
AGAGATAGATTAGACGCAGTCCTCAGGAGGGAAACATGCTTTTCACGACG
AATATATCCTTCTTTTCCCGTACGCAACCCTCCAAATATCATCTTCTGGA
AATTGGAGTACAAGCAACCATAGCATAGACACGTTGGGCACATTCTCTCT
GTTCATTGTGGTGCCTCCGGGTACTGTCAATGTTGATCCAATGTGGCGAT
ATGCAACTTGGGATTGTCAGGAATTTCAGGATTATGACACAGGATTCGCA
TGCGTCCATTGGAATATGATATATTCGGTGCACTACTGGCTTACTTGATA
AGGTGTTAACCCCATCTAATTCAGTTCTTTAAGATGCCTATAACCATCCG
CATCATCTATGCTGCATGAGGTCTGAGAGACCTAGGCTGCCGCAGGAACA
CGCTTGAGCCTTTAACGTTAGTCATCCCTTGAAAGTAGTGCTCTCCTCCC
ATCCCACCCGTGCATCCTCATCCTCTACTTGCCTATAGACAAGAAGAATT
CACGTGATATCTTTTACGCTTTGTACATGAATCGTCCAACGGTTGAAGCA
TGACGCGGAAGCTGGTGGATATCGCCTTTGATTTCAATCTCCAGCTCGTT
CTTTCAAAAGAGACATCCCAAGTGCCGAAATGGATCCTTGAAAAATGAAC
ACATTGGTCCGTTTTCATGGTTTTTTTTGGTTTGTTTTTTTTGGTTCTAA
AAACAACATATTATTCATGGCCTTGACTATGGTCGACAGGTGTAGTGAAG
AGGGTCGACAGAACGTTGGGATTTTTGGAAAGCAACCCCCCCCCCCCCAA
GTATAATTGTTGTGTCACGGCTGGTGTTCGCCTCTGAATACTAACACCTT
TTTTTTATATTTTGGCGATTATCGACACAGGAGTAACCAATGCTGTAAAG
CCAATCGACGAGCGTGTCATCGACGGCCCGGACATTCGTCACAATCGCGA
CGAGCTGCGGACGCTTCGGTAAAGACGTTCCATGGGCACAAGGTGCTGCA
GACTCTGATTCGATGCTACTTCTCGCCACAACATACCACGGGACAGAGGT
GCGCGATGGTTGAATGGTTTTGTTGGTTATGGTATTGTTGTTGTTGTTGG
TGATGTTGGTAATGTTTGTCGGTGTTGGTGATCTTGATCTTGGTATTTGT
GTTGTCGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCGCTGTCGC
TATTGATGCTTTGCAGCAATAGCTGATGATATTCCAATGCGCCGGACTTC
GCTGTATCAGCCCACACAATGGACAGTGATGGATGATGTCGCTTCGCAAA
CACTCGAGCAAAATCGTTGTGTGGCGGTGTCGCCCGTCTCTGTCTATTGC
CTTTAATATATAGTGTTGCCCCATGTCGTATTCTATTCCAGGTTCGTCAT
GTCCGGGAGCTCGGACGGTCGCGTGTGCGTGTGGGATATCCTAACGGGCG
AAATGGTGAGTGTTGGACAACTACCTAGTGTATTGTATTGTATTGTATTG
TATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTG
TATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTGTATTG
TATTGTATTGTATTGTATTGTATTGTAGTGTATTGTAGTGTAGTGTAGTG
TAGTGTAGTGTAGTGTAGTGTAGTGTAGTGTAGTGTAGTGTAGTGTAGTG
TAGTGTAGTGTAGTGTAGTGTAGTGTATGCACGAAATGGGGATGGGGAGA
TTTTGGTATGATATATTGTTTGTATGAACGACAGTAAGTAGGGATTTCCG
TTACGGGTGCCTTTCTATCGCTGTATTTGAATTACCACTATTTTGTTTGG
TGTTTTTTCACGGACGCTGAAAAATAGCAAAGAATTATCTGAGAGTCTCA
TTGGAATAAGGTGGGGCGGGGTCCTTTTTCACGAGGGAGGGGGGGGGGGG
GGTTCCGACCTTGCAGTGCTGGAGTATTGTAGCGGGATGTACACGGAAAA
CATAGGGTTAGGCTACTGAATTATGCATGTTTGTTGACCCAACGGCCTGT
CACGAACATTCTGTTTTCCCTACATTGTTGGAGTTGTTTTGGGGTCGCGA
GGCTCCTTCAAAATCCCTCCCGTGGTTGACCGGGGGCGATCAAACATGTA
GGCTTGGTCATACCGTTTACATGGGCTGCTGTGTTTTTTGGGCACTGTCG
TTTTTGGGTCGGCTATGTTTTGTGAGCTTTATCAATCCTTTAGGAACTGG
CCGTCGTAACGACCAAAAAGAGAGATCTGCTTATGGTCAGTCGTGAATAG
TGACCAATAAGCCGACTTCATGCACTAAGCAGCTATCTAGAGGTGGCCAG
TGCATCTAAAGTAGAATGAAGGGGGCGTTTTTTCCCGTTTTGAGCCATGT
TTGATTTAGTGTTGAGTGGAGAACGGGCCAACACCATCTTTGTTTTTTGC
AACGGTCAGAACAAAAACAAGCGCTCCGTAGCTGATAGGGTCGTCAGCAG
TTCCTGAAGGGCTGAGAGAAGCAATGGGACTGACGGCGGAGACGAGAGCG
ATGGCAGCGAATAGGATGTCCGAGCATCCTGTCACCGTGGCTGCAATCAC
TGCTCTCGACAATAGCACACACGCAGCTAGGCGACAAGTATTGCTGTATT
TTGCTCTCTGCTAACTGTCTACAGGTTTTGGAAAAGCGCCGTGAGAGCCA
TGGTGTGTTTGATTTCATATTCTGGCGTGCGACCATGTGCTGATCACATA
TGGCCTATACAGTCGGTCACTCATGACGTGGTTTGTGATTCGCGTTTCTA
TCAAGTTCTGCTGTCGTTGACCCCCCCAAAAGCACGCCAATTCGTGTCTT
GTGTCTGTAGTAAGTACAGGACTGTGACGATACTTTCTACAGAGCTAGTT
CCCTGCGTATCCCCGTAATCATGTCGTAGGCGTTGGTCATGAAAAAATCT
AGAGTGTTTGTTGTTGTTCCGTGAGCGATTTGTCTCAAATCTTTCACAGC
CCGGCATCATACGGGTACACGTTCAACACTGTCGACACATACGATCCTCA
TGTTTGTTTGGTACGTCACAGTTGATAATATCGTTGTTACGTGGCGGAGT
TTTTAACCCCTAGGCACGAATCTTGAGAAAAAACAGTAAGGGAACCCGAC
AGTCCCGCGGCGGTGTCCAGAACAAGCACAAGAATTATGACTAAAACATT
TATCTCACAGGCGCGGTGCGGTGCCTGTACCTTCGCGGAGGTTTTTGTAT
TTGCGTTCAAAATTTGGTGCAGGGCGTTACTTGTAGGCAGGGATTGTATG
AAGGGATTGTACAGGGTCTGATGCCGTAGGGGTTATACACAAGGTTACAC
GAACTGAAGCTCAACGCTATCACTGCGAGATATTTTTATTCGGTAAGTCC
GTTCGAAGGTGTCAGTTCACTTGATGAGCATCGGAAATCCCTCTGACAGG
AACAAAGCTTTATCCTCCCAAGGATGCGAAGCCAATGGTCTAGCAATAGC
AACTACGGCATGTATAACATGATTAAATCTGCTCCCACCCCTGGTTGGTA
GATTTGTGGATTCCGTCACTCGGTAGTGTTGAAATTACCGAGTGTGCATC
CCAGGTTAATTCGTGATTATAATAACGTTATACTTACTTCGTGCATTTTT
CCCCTGTACTCTTATCAAAAACCAATTTTTAATCAGTGTCCCGATGTTGT
AGATGCTGTCTTCCTGGCGAAGTTCTCGGACCCCCCCCCCTCCTTGTTTT
CAATTTTTGGCGATGACTATCCAGTCATGATTTATTGCGGGCTCACTAAA
TAATGACATCTCCGCAGTACGTGCGTACCCTGAATATCAATGATTACAGA
CGGAGTCAAACGTTCGATGACAGAAAAGCGGCGCTCGTAGTAAGTCGAAT
GTGTATCTATCTATCTATCTGTGTGAGGTGATCTATTTAGGTCACAATGT
TGTACACACGTCAAACGTGCGAGTAATGCTTCCCCTTCCTTCCCCCCTCC
CCCCCCCCCAACCCCTTAAGTTTGTTCAATGTGTGGACAAGTAATTCAGC
AATTTGGAGATATGCTGAGCATATCTGGACTTCTTTTCTACTGTTTTTGT
CATGTTTTCCATGATATACAGTAATTTTATTGGTGTCTGCTTCTACCTTT
TAGTCGCGCTTTTTGTTATCTTATGATAATTTTTTCGAACCGTATTCTCA
GCAATGTAGAAGGCGTTCTCATGGTGAAAATACCGTAGGCAATAATTGAT
GCGTGTAATGTTGCTGTACTGCAGTCGGTGGTACCATATCTTACTAGTGA
TTATGCTGATAATTGTATATAAGTGCAGACTAAATTTCAGCTGCCCAAAC
TCAACCTGGGTGCAGTGGAATTATGATCGGAGTTTAGAGTTGTAGTTCAG
CTGACTGGCAGGGCCAATTTACTACAGTAATGAGACCCCACCCCGCCCCC
CCCTTTGCCCTCCAACGCAACCCATCCCTACCCCCCGGCACTCGCTCAGG
TCCGAAGCTTGTCATGGCATCGTGATACGACGCGCGATGTATCGTGGCAT
CCCTTCCTCCCGCTCGTCGCTTCCTTCTCGTGGGACCACTCCGTCGGTTT
GTGGGGATACAGCGCCGCCGCGCCAGATGTGGCGGGGGCTAAATGCGACG
AGGAGAGAAGTCGAGGGTGTGAATTGCCATCTGTTCTGTAA

Coding sequence (CDS) from alignment at H-paniculata_contig9663:3300..9290-

>mRNA_H-paniculata_contig9663.17350.1 ID=mRNA_H-paniculata_contig9663.17350.1|Name=mRNA_H-paniculata_contig9663.17350.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig9663:3300..9290- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGTGGGCTTTGCGGGCACCAGGCGGGCGTGACGTGCATAACGGCCAA
GGGGGATGGGCATCACTTCATATCGAACGGCAAAGATCAGACTCTCAAGC
TATGGGACATCCGCAAGATGCTGCATCCCAAGGAGAAGCGCATGGTTGAT
GCCGCGGTTGTGCCAACATGGTGGGTGGGCTTTGCGGGCACCAGGCGGGC
GTGACGTGCATAACGGCCAAGGGGGATGGGCATCACTTCATATCGAACGG
CAAAGATCAGACTCTCAAGCTATGGGACATCCGCAAGATGCTGCATCCCA
AGGAGAAGCGCATGGTTGATGCCGCGGTTGTGCCAACATGGAGTAACCAA
TGCTGTAAAGCCAATCGACGAGCGTGTCATCGACGGCCCGGACATTCGTC
ACAATCGCGACGAGCTGCGGACGCTTCGGTAAAGACGTTCCATGGGCACA
AGGTGCTGCAGACTCTGATTCGATGCTACTTCTCGCCACAACATACCACG
GGACAGAGGAGTAACCAATGCTGTAAAGCCAATCGACGAGCGTGTCATCG
ACGGCCCGGACATTCGTCACAATCGCGACGAGCTGCGGACGCTTCGGTAA
AGACGTTCCATGGGCACAAGGTGCTGCAGACTCTGATTCGATGCTACTTC
TCGCCACAACATACCACGGGACAGAGGTTCGTCATGTCCGGGAGCTCGGA
CGGTCGCGTGTGCGTGTGGGATATCCTAACGGGCGAAATGGTTCGTCATG
TCCGGGAGCTCGGACGGTCGCGTGTGCGTGTGGGATATCCTAACGGGCGA
AATGGTCCGAAGCTTGTCATGGCATCGTGATACGACGCGCGATGTATCGT
GGCATCCCTTCCTCCCGCTCGTCGCTTCCTTCTCGTGGGACCACTCCGTC
GGTTTGTGGGGATACAGCGCCGCCGCGCCAGATGTGGCGGGGGCTAAATG
CGACGAGGAGAGAAGTCGAGGGTGTGAATTGCCATCTGTTCTGTAAGTCC
GAAGCTTGTCATGGCATCGTGATACGACGCGCGATGTATCGTGGCATCCC
TTCCTCCCGCTCGTCGCTTCCTTCTCGTGGGACCACTCCGTCGGTTTGTG
GGGATACAGCGCCGCCGCGCCAGATGTGGCGGGGGCTAAATGCGACGAGG
AGAGAAGTCGAGGGTGTGAATTGCCATCTGTTCTGTAA