Homology
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match:
D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)
HSP 1 Score: 153 bits (386), Expect = 2.130e-41
Identity = 77/101 (76.24%), Postives = 84/101 (83.17%), Query Frame = 1
Query: 31 EKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLA---TSKGYGENERFVVLKREPNHFVLLTVV 324
E E +EGLP V++V ELRRFVRLEG+DVGHG CMWADT AHHVVSRRLK+TILFVDMEREK AWPYRVLA T GE+ERFVVLKREP+HFVLL V
Sbjct: 337 EVEEENEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDGEDERFVVLKREPSHFVLLETV 437
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match:
A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)
HSP 1 Score: 150 bits (378), Expect = 3.730e-39
Identity = 76/101 (75.25%), Postives = 83/101 (82.18%), Query Frame = 1
Query: 31 EKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLA---TSKGYGENERFVVLKREPNHFVLLTVV 324
E E +EGLP V++V ELRRFVRLEG+DVGHG CMWADT AHHVVSRRLK+TILFVDMEREK AWPYRVLA T E+ERFVVLKREP+HFVLL V
Sbjct: 657 EVEEQNEGLPVVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTDSDDEEDERFVVLKREPSHFVLLETV 757
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Match:
A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)
HSP 1 Score: 89.4 bits (220), Expect = 2.480e-18
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 22 GKEEKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTFAHHVVSRRLKLTILFVDMEREKSAWPYRVLATSKGYGENERFVVLKRE--PNHFVLL 315
G+ + G+ P VQ+V +L+ ++R EG+ G G CMWAD A VV++RL+L ILFVDMER + AWPYR LA +G E +VVLKRE HFV +
Sbjct: 195 GRTRRSGGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLAACEG--EPAHYVVLKREGPAGHFVYI 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9660.17349.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.13e-41 / Id = 76.24 Expect = 3.73e-39 / Id = 75.25 Expect = 2.48e-18 / Id = 49.00 Sequence D8LS81_ECTSI A0A6H5L3H2_9PHAE A0A836CA53_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-12_004490.1 Exons 2 Model size 457 Cds size 456 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9660.17349.1
>prot_H-paniculata_contig9660.17349.1 ID=prot_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
GAAEEGEGKEEKVEGDEGLPFVQSVGELRRFVRLEGADVGHGRCMWADTF back to top mRNA from alignment at H-paniculata_contig9660:1646..7620-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9660.17349.1 ID=mRNA_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5975bp|location=Sequence derived from alignment at H-paniculata_contig9660:1646..7620- (Halopteris paniculata Hal_grac_a_UBK monoicous)GGGGCAGCAGAGGAGGGGGAAGGGAAAGAGGAGAAGGTGGAGGGTGACGA
AGGGCTGCCCTTCGTGCAGTCTGTGGGTGAACTCCGTCGGTTTGTGAGGC
TAGAGGGGGCCGACGTGGGGCACGGCAGGTGCATGTGGGCGGACACGTTC
GCTCACCACGTAGTGTCGAGACGGTTGAAGCTCACCATCTTGTTTGTCGA
TATG GTGAGTGTGGGTTATATGTGTGCAGGTGTGTATGTGCTGCTTTATG
TTGTTGTGTGTTGTGTAGATATGAAGGTGTGTCGTAAAAGGGGCGTTTAT
TTCAACCCTTCAAAGTACAAAAAAGTTGTGTAATCGCGGCAAAAATTGTG
ATGGCTCTGCACGAGCCAACACGCCGAAAGAGGGGCTGATATCCGGCAGG
TGCATAGTAGTCTGCACCCAACATACCACTGAAGCGTTGAATACCCCCCT
ACTCTATTTTGCACCCTTTTTTTTATGGGAATAAAAAAATAATGTATTTG
TGAAGAAATATTCCCTGATGAACCTAGAATTTTAACATGTACACATTATA
TATGTCATTGCCATTAAAATCTACCAAAAGGTTGGCGGTACATACGACAC
CCTCGTCAACAGTTGTCACCAATCGCGACTACCGTTGTCCCTAGTCACTG
GAGAGAGCGCGATCATTAACATTTTTTGGTGGTAACCTCGCCTTGCTGAC
CATATATATAGTTGGCACCGGGAACGTGACACATCACAGTACGGTAAAAT
AGTCGCCGAGAGAGCAGTGTTGTTTTGTCTGTCTACCATTGAGAAGTTAA
TCCGAAAAATATGTTTTTAATGATGAACTCAATGAGAGATCGACCCTCTT
GTCTCTGTGTGTGTCTGTGTGTGTATTTGTTTGGTCACATATTTTACTTG
TTGTTTCCCGTCAAACTTGGCCACGGAATGAATGCTACCGGATAAGGGTG
ATAGGTGATGCTCGTGTATCGATATTTATTCCGTATGTATGAATGTCACC
TAGGTTTTCAAACGAGAGCTTAGGCTCTTGTTCGTCTATTTATCTACCTA
TCCATCTATCTAGATCTCGATGCTCCTCGTTTTATCTCGCGTTTCGACAG
TTGTCGATAACAGGTGCTATACGTGTGTATGTGTGTATGTGTGCACACGT
TCGTATCTGTTATATTTTATGTACGTATGTACATAGATGTAGGTGACTTG
TCTACTCTTTTTTTGAGAAACTCATAAATTCACATGGTCACCCTCTTTGC
CCGCAGCAACTAATCAATCGGCTTGGCCCTGATTAGAGCTTTGGCGACTA
CAGTACATCGTTGGCTCTTTTTCCAATCGACTTGGTCTTGGTTGCAACAA
TCAATCCCCATCCATGGTTGTCGGACATTGTGGCGTTTATATTTAACCCC
TGTACCGCCAGGGCCCAAAAAAGAACAATAAAGGCACCTGACAGTCCCGC
GGCGAAACAGCCACGAAAAGGGGGGGGATTTCTTTTGACGAGGGAGGAAG
GGCGGCCTCCGACCTCGTAGTGCTGGAGTACGGTAGCGGATTGTACACGA
AATATCTAAGCTCATGCCAATTGTGCACGTTTGTTCGCCCGACAGTAGCC
AATCAAAAACGTGGCGTCTCCTATACATTAATCAAGTTGTTTTGGGGTCA
CAGAATACCTACACAATGCTTTCGGGGGTTTAGGAAGATCGAGCAAAACG
TGCAGTCTTGGTCATTTGATTTTTGGGCTGTTGTATTTTGTGGGGGGCAA
AGATGGGTATCGTGTTGACAGCGAGGACGAGAGTAATAGCAGCGCATGGT
ATACCTGAGAACCTTGACACCGTGGCTGCAGCCAATGGTTTCAACAATGA
AATAGACATAGTTCAATTGTGCGATAAATTTTTCTCCTCCCGGACAAATA
CGAATTCAAGACACGAATAAATACGAGAAATTTGGAATGAATACAGAATC
TGTTTGAGTTGTGGAAGATGTTCATGTGACGCGAATAATATGCAGTGTAC
TCGATATACCATGGAGCATCGAAAACCTCGGGCAGATGAAGTATTCAATC
TGTACAGTACCATCCTGAAAATAAACAGAATGTGCATGTGTGACTGTTCG
CCGGGTATACGACCACCTGGTGACCATCTGTAAAGTGACCATTCAGAGAC
TTGTAAACGAATAAATACGTGTTTACCCAAGGCAAAATAATGATAGTTTG
AGATAGTTGCGAATGTTCCGTATTTGTCTGGGGGGTGAAATTGTTCTGCT
GTTGCTGTCTGCACTATTTGCGGGCGTCGGCACAATGCCGCGTGATAGCC
ATCGTGGTGGTTTTGATGAAATGTCCAGGCGTGCGGCTTTGTGCAGCGAA
TATCCCCTGTGCAGTCAGTCAGTCAGTCAGTTACTCACGATGTGAATTGT
GCTTCACGTTTCGATCAAGTAAGTGCTGCTGTCGTGGAACGCAAGAACCG
TGCCACTTCTTGCCTGTGTTTTGTCTGCAATAATTTCAGCACCGTGTTTA
TTGTCTGTAGATGTCCCTATCCCTGTACTCATGTCGTGGGCGTTTGTCAC
GAAATAAGTCCGAAGGGGTTTCGGCCTGTTTTCCGAGCAGATGTCGTATA
TGTATCGTACACGGCCCGGCCATAAAGGTTAAACTAGTGGACAGGTTACG
GCTACCGCAGTGACGGCGACTACGTCGACGATGTCGTGTTACCTCTAAAT
AGTCGACGCCCACGGACTCGCTGCACTCGTAGTGGCTCCCTTACGCGTAC
TCGCATGAAGTCACAATGAAGAGCACCAACTTCACAAAATTCGATAGAAT
GTCCCGTGACTGCAGCAACGCAACGGGCAACGTTCAACATCTACACACAG
AACCGCTACTATAGACTCTCAGAGGTACCCACATGGGAGATGTAGATGCG
GAAAATTCATCTGCTCGGAGATATCGTGGACATGGAAATGTCCAACTGTG
TTGAATGGGGAGGTGTATTCACCAACGGCTTTTAGCAGGTCAAGTGTTCA
GGTTTACGCCATGCCGACAACTTCTCATTACACCCTCTCCAGCGCCAGGG
TGTCTCTCCCAGACCATGCCCTGCTGCAGCACTGCCGTACCTACAAACGC
TGTGCCTACTCCAGTATGTATGCTGCGTGTGGATGACATCCTGCATGACA
GCCTCTGTGACACAAGTGCAAAATATGGAAACACGGCGTATGAAAAACCT
TCACTGGACTCCTTGTTCATGGTTTTAAGAATGGCAGTTGTGTTGTTCAG
GTTGACGCCCTGCCCTATCTTCTCTTCGCGCCGCCCTCTTGGGCGCCAAG
TTGTCTCTCCCACACTATGCCCTGGGCAGCACCCACATACGTACAAATGC
GCTATCCGTACTCCAATGTGTGCGCTACGTGTGGACGACAATCTCTTATG
ACAGCCTCTGACAGAAGTGCATGGCAAAATGGAAAAGTGTTTACTGGACC
GACTGTTGCGTTGTCCAGGTTGAAGCCCTGCCCAACCTTCTCTTCACACC
CTCTTCAGCGTCAGGCTGCCTCTGCTGCCTCTGCTGCCTCTACCACCCTA
TGCCCTGGTTTACATGTCCGCACGTACGGACGCGCTGTCCCCACTCCTGG
GTGGATGCTGCCAGCCTCTATGACAACCGCCGTGATGAAGGAGTGATGAG
CAAAATTCGGAAAACGTTTACTGTATTGTCTTTTTATCGATTCTCTGGCA
TACACTCTCTCTATCTCTTGGTATAAAGACGTCTGCCCATGGGCATGCGT
CTCTGTTGATGTGCCCTGCTGTGTGTCCCCTAGTGCCTACCGTTGTTCCT
GTGTGCAGAGCTGTCAGTCTGTGCTGTGCTGTGCTGTGGATGAACGTGAT
GGTCATGTAGAGCTGACTGCTTAGACATTTCTTTTTTATTTCTAAACTTT
CTTGAGCTGAGAATATTTATTTCGGTTATTTGAAGATGGAAAATCGTAGT
TTAGATTCTTCGTTTTGAAGTTACTTGACTTCGGAGTCGAAAGATAAGTC
CGAAACAACCCATTACCTTAGCCTATTACATGATAAGAATACGCACAATT
TGGATAACATTCCTTGCTTTAGTTATGGTCGTCACCTCATGTATTCACGC
ACTACAGATCATATCGCCCCTTATGTATAAGAATTTAGAGTTATTTTCCT
ATATATATATGGAACTCTGGTACATGACCAAGATTCCAGGCAAGGGTCCA
TTTTTTCTGTTGTTGTCGTGAAAACAGCCGATATTATACTGTACCGTAGA
GGCCTAGCAAGCATACATCTCAAGCTGCAAAATCGGGAGAAGGTACTCGA
TACGCGGCTATCTCCCTCTCTCGTGCACCTCTCAAGAAATCTTCTTCATA
GTAATTTCTCGGGGAGAGATGAGCTTTGGAAACGAAAGTAATGTGAGTTG
TACTGAGTATATATATAGAGAGAGAGTTAGATGGATAGATTGTATCGTTC
GGAGATTTTACCTTCGGCATGCGAGAGTAGTTCGGAGGTCGACCAATGAG
AAGCCAGTATGTACAAGAAGGCACGATTTTTTGCGCGTGGCGGTGGAGGT
GGAGATTACAAAGAAAACTAAAGACTAGCCACGGTATATAGGGAAGTTCA
TGTACTGGTGCAACTTGTCGGCTTTCGTTTCAGTGCCCATCTAGCTAGCA
CCCTGCCACTATGACCTCGTAGTCCTGCTGCTGTTAGCACTAGTCAATCA
TAATGGGTCATCCGGTCGTAAAATATGTGAATGGTAGTGGGTGTTTTTCA
CCATATTTTAGATGCAGTAATCTGGTTTTTGGCAGCCGCATTGTTATTCT
TTTTGCGGTGAAAGCAAGTGCTGTCAAATCGACTTGGCAAGGGGTTCTGA
GAAGATGGTGAAGTTGAAGGTAGAGTAGCACCATCCCGCGGCTCGTTCCC
CTGAGCGAGTCAGTTTTATCGAGGGAATGGTTGATGGACTGCTTCGAGAA
CACGTCACGAATTAGAATAAGCAATAAAAGGGATGAGTGTTTGCTGTCGC
AATTTCCAGCGGCGATCCAACCTTGTTTTTGTTTTTTTAGGGGGGGGGAT
TAATTCTAACCCCGCTGAGAGCTAAAGGGCCCAGCCTTCACTGGTTATAG
TCCGTGCAAAATCAAAACCAATAGCCATCCACGCAGAGACTTGAGACTTG
CATCGAGCAGGAGAGAAGGCACACCCATTTGTATTATGTGTGTGCGTGTG
TGTGTGTCTGTGTGGACAACCTCAAGAACGAAAATTGACTGGATTTTCTG
CTGCTGTTACTCCTCGTCACTGGGTAGAAGTTTTGATTTTGAGTACATAC
ACATAGCTGCGCGTACAAGCTACCTGCCCTCAGTATTACCGATACATATA
CAGTACTAAAAAAACACAATTTAAAACAAGAAGGCAGATTTCGCCTGGCG
GGTTAATTGCCTCACTCGGGTACTGACTATCCCCTCAAGTCCGATACGTT
GTGTTGTGGGTATGAAAGACGGAGATTCAAGTCCCCTTTTTTGCCTAGGC
TAGAAAGTGTGAAGGTTTAAATGCCGTGGGTTGCAATTCCATTAATAATT
GTTCCATGTCGTTATCTAGTCTTCAACATCTCAGTTGGTGGAGCAAGTGG
CTGTTAACGACGGGGTAATTGGTTCTAGCCCAACCTGTTTTGTCTATTCC
ACTTTTGACTCGTATCTTAATCTATGATAAGCCCCGCTCCCCCCCCCCTG
TCATACCATCTCGCTCCCACAGGAAAGAGAGAAAAGTGCGTGGCCGTATC
GGGTTCTGGCAACCAGCAAGGGCTACGGCGAGAATGAGCGCTTCGTTGTG
CTCAAGAGGGAACCCAACCACTTCGTGCTGCTCACGGTTGTGGTACCCGC
CCGGCCGCCTCAAACCGCAGGAATGATTACAGGGAAAAAGTTAGGGAGCG
GAGGCGATGAAGATGGGCGAGAGCGCAGCAGCGGTGACGCCGTCTCGGTA
CCAGCGGCAGCGATAGCGATGGGG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9660:1646..7620-
>mRNA_H-paniculata_contig9660.17349.1 ID=mRNA_H-paniculata_contig9660.17349.1|Name=mRNA_H-paniculata_contig9660.17349.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig9660:1646..7620- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top