mRNA_H-paniculata_contig966.17348.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI) HSP 1 Score: 144 bits (364), Expect = 6.280e-37 Identity = 69/97 (71.13%), Postives = 83/97 (85.57%), Query Frame = 2 Query: 1883 VKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
V E+VG H VVV+SK+YCP+CTKAKKAL GAK+ L+ELD++DNGSAIQDAL ++TGQR+VPNVFI G+SIGGGDDT RLQ+SG+LLT V GAV
Sbjct: 8 VNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.060e-29 Identity = 59/101 (58.42%), Postives = 83/101 (82.18%), Query Frame = 2 Query: 1874 ASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGA-KFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
+S++++ +G++ VVVFSK+YCP+CTKAK++L G F +ELDQM +GS+IQ L+++TGQRTVPNVFI G SIGGGDDTA L++SG+L TM++ AGA+
Sbjct: 10 SSYIQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A2V0NRF1_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRF1_9CHLO) HSP 1 Score: 121 bits (303), Expect = 9.990e-29 Identity = 57/101 (56.44%), Postives = 76/101 (75.25%), Query Frame = 2 Query: 1871 SASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
+++FVK+ + A+ VVVFSK+YCPYC KAK+AL FH++ELDQ +G AIQDAL+ +TG R+VP VF+AG IGGGDDTA SG+L T++ D GA+
Sbjct: 2 ASAFVKDTIKANKVVVFSKTYCPYCVKAKRALQQLTTNFHVVELDQRGDGDAIQDALLDLTGARSVPRVFVAGKFIGGGDDTAAKAASGELKTLLADVGAL 102
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A6G0WNG1_9STRA (Glutaredoxin domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNG1_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.170e-28 Identity = 56/105 (53.33%), Postives = 79/105 (75.24%), Query Frame = 2 Query: 1868 SSASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDN---GSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
S FVK + H VVVFSK++CPYC AK+ L +TGAKFH++EL+QM + G +Q+A +TGQRTVPNVF+AG+SIGGG +T L ++G+L+ +++DAGA+
Sbjct: 3 SGIKFVKNAIAQHAVVVFSKTWCPYCVMAKEVLTSTGAKFHVVELNQMGDEPTGDDVQNACFQLTGQRTVPNVFVAGNSIGGGSETKALHKAGKLVALLRDAGAL 107
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A067BZI2_SAPPC (Glutaredoxin domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BZI2_SAPPC) HSP 1 Score: 119 bits (297), Expect = 7.510e-28 Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 2 Query: 1868 SSASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDN---GSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
S FVK ++ H VVVFSK+ CPYC AK L + GA+FH++EL+QM + G +Q+A +TGQRTVPNVFI G SIGGG DTA LQ++G+L+ ++KDAGA+
Sbjct: 3 SGVQFVKSLISQHGVVVFSKTTCPYCRMAKDVLGSVGARFHVVELNQMGDAPTGDDVQNACFQLTGQRTVPNVFINGKSIGGGSDTAALQKAGKLVPLLKDAGAL 107
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: K3WRU6_GLOUD (Glutaredoxin domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRU6_GLOUD) HSP 1 Score: 117 bits (293), Expect = 2.450e-27 Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 2 Query: 1868 SSASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
S V+ V A+PVV+FSKSYC YCTKAK L G +F L+ELDQ+D+G AIQDAL +TGQRTVPNVFI G S+GG D L ++ QL+ ++K GA+
Sbjct: 3 SPREIVETKVAANPVVMFSKSYCQYCTKAKALLRELGVQFELIELDQVDDGDAIQDALTEITGQRTVPNVFIGGKSVGGNSDIQALYKNDQLVPLLKQHGAL 104
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A485KN53_9STRA (Aste57867_9546 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN53_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.660e-27 Identity = 56/100 (56.00%), Postives = 76/100 (76.00%), Query Frame = 2 Query: 1880 FVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDN---GSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGA 2170
FVK + H VVVFSK+ CPYC AK+ L ATGA FH++EL+QM + G+ +Q+A +TGQRTVPNVF+AG+SIGGG DT L ++G+L+ M+++AGA
Sbjct: 7 FVKNAIAQHAVVVFSKTTCPYCVMAKETLKATGATFHVVELNQMGDEPTGADVQNACFQLTGQRTVPNVFVAGTSIGGGSDTKALHQAGKLIPMLREAGA 106
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A024TSZ6_9STRA (Glutaredoxin n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TSZ6_9STRA) HSP 1 Score: 116 bits (290), Expect = 6.810e-27 Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 2 Query: 1880 FVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDN---GSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
FVK V+ H VVVFSK+ CPYC AK+ L +TGA FH++EL++M + G +Q+A +TGQRTVPNVFI GSSIGGG DT L ++G+L+ M+++AGA+
Sbjct: 7 FVKNVIAQHAVVVFSKTTCPYCVMAKEVLQSTGAAFHVVELNRMGDEPTGDDVQNACFQLTGQRTVPNVFIGGSSIGGGSDTKALHQAGKLVPMLREAGAL 107
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA) HSP 1 Score: 115 bits (289), Expect = 7.510e-27 Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 Query: 1883 VKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
+K V + PVV++SKSYCPYC KAK+AL A A F +ELDQ+ NG+ IQ AL VTG TVP VF+ G IGGGDDTAR Q++G+L+ +V AG +
Sbjct: 5 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Match: A0A4D9CXK9_9STRA (Glutaredoxin domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXK9_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.220e-26 Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 2 Query: 1880 FVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGAKFHLLELDQMDNGSAIQDALVAVTGQRTVPNVFIAGSSIGGGDDTARLQRSGQLLTMVKDAGAV 2173
FVK + AH VVVFSK+YCP+ + AK+AL + GA FH++ELDQ +G IQ AL +TG+RTVPNVF+ G SIGGGDDT L R+G+L M+ GA+
Sbjct: 19 FVKTTLRAHKVVVFSKTYCPFASMAKRALQSEGAVFHVVELDQRSDGGEIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKLKEMLSALGAL 116 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig966.17348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig966.17348.1 >prot_H-paniculata_contig966.17348.1 ID=prot_H-paniculata_contig966.17348.1|Name=mRNA_H-paniculata_contig966.17348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp MHGPHTFSLSCFFSSASFVKEVVGAHPVVVFSKSYCPYCTKAKKALDATGback to top mRNA from alignment at H-paniculata_contig966:11996..17581+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig966.17348.1 ID=mRNA_H-paniculata_contig966.17348.1|Name=mRNA_H-paniculata_contig966.17348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5586bp|location=Sequence derived from alignment at H-paniculata_contig966:11996..17581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig966:11996..17581+ >mRNA_H-paniculata_contig966.17348.1 ID=mRNA_H-paniculata_contig966.17348.1|Name=mRNA_H-paniculata_contig966.17348.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig966:11996..17581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |