mRNA_H-paniculata_contig9654.17346.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 6.530e-8 Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
MILFLHGN DLIP++ LTE A IPGR NPV L+ L+G F +
Sbjct: 52 MILFLHGNLDLIPEDITKLTEAVARSKIPGRLANPVEGLEQLDGAFAPV 100
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 5.180e-7 Identity = 26/49 (53.06%), Postives = 31/49 (63.27%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
MILFLHGN DLIP++ LTE A PGR NPV L+ L+G F +
Sbjct: 52 MILFLHGNLDLIPEDITTLTEAVARTMFPGRLANPVEGLKQLDGAFTPV 100
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.230e-6 Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
MILFLHGN DLIP++ LTE A IPGR NPV L+ L+G F +
Sbjct: 436 MILFLHGNLDLIPEDITKLTEAVARTKIPGRLANPVEGLEQLDGAFAPV 484
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 53.5 bits (127), Expect = 3.210e-6 Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
MI+FLHGN DLIP++ LTE A IPGR NPV L+ L+G F +
Sbjct: 663 MIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLDGVFAPV 711
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 51.6 bits (122), Expect = 1.520e-5 Identity = 22/49 (44.90%), Postives = 30/49 (61.22%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
M+LFLHGN DLIP+ P L ++ IPGR NP+ +L L+G +
Sbjct: 603 MVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGLDGTLGLV 651
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 48.9 bits (115), Expect = 4.240e-5 Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGA----IPGRRPNPVSDLQHLNGQFHTI 147
MILFLHGN DLIPD+ PAL D A +PGR NP L+ ++G F +
Sbjct: 70 MILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPV 122
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 49.7 bits (117), Expect = 7.320e-5 Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGA---IPGRRPNPVSDLQHLNGQFHTILDDGDGEDE 174
M+LFLHGN DL+P+ P L D G IPGR NP+ +L L+G+F + D E E
Sbjct: 705 MVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVDLTNDDESE 765
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 49.3 bits (116), Expect = 8.110e-5 Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 1 Query: 1 MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTI 147
MI+FLHGN +LIP++ LTE A PGR NPV L+ L+G F +
Sbjct: 199 MIMFLHGNLNLIPEDITKLTEVVARTKFPGRLANPVDGLEPLDGAFAPV 247 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9654.17346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9654.17346.1 >prot_H-paniculata_contig9654.17346.1 ID=prot_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp MILFLHGNKDLIPDNEPALTEDQALGAIPGRRPNPVSDLQHLNGQFHTILback to top mRNA from alignment at H-paniculata_contig9654:7565..7839+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9654.17346.1 ID=mRNA_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=275bp|location=Sequence derived from alignment at H-paniculata_contig9654:7565..7839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9654:7565..7839+ >mRNA_H-paniculata_contig9654.17346.1 ID=mRNA_H-paniculata_contig9654.17346.1|Name=mRNA_H-paniculata_contig9654.17346.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig9654:7565..7839+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |