mRNA_H-paniculata_contig9651.17344.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: D7G7K6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7K6_ECTSI) HSP 1 Score: 335 bits (860), Expect = 2.180e-111 Identity = 169/201 (84.08%), Postives = 187/201 (93.03%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADK 603
MVKHNNV+PN HFHKKWQRRVRTWFDQPAKKKARRQARQ KAAKMAPRPTQLLRP VHCPTIKYNSKVRLGRGFN++ELKEAG+SKKTALTIGIAVDHRRT+KSE +F +NVARLKEYRANLI+FPRG K+ PKKGDSSL++Q +ATQVTGVTMPLVKA KPVEF+ VTAEM T+LHSERR+ARNE K+AGIR+RQK +K
Sbjct: 1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEK 201
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A836C9T6_9STRA (60S ribosomal protein L13 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T6_9STRA) HSP 1 Score: 252 bits (643), Expect = 1.360e-78 Identity = 129/204 (63.24%), Postives = 154/204 (75.49%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
MVKHNNV+PN HFHKKWQ RV+TWFDQP KKKARR R KAA +APRPTQLLRP VHCPTIKYN KVRLGRGF + ELKEAG+S+K A TIGI+VDHRRT++S AT Q+NVARLKEY++ LI+FPR PK GD++ A+A QVTG MPL KA V F VT EMK + R+AR+++++ GIR +Q A+K A
Sbjct: 1 MVKHNNVIPNGHFHKKWQTRVKTWFDQPMKKKARRMRRAAKAAAVAPRPTQLLRPAVHCPTIKYNMKVRLGRGFTLAELKEAGISRKVARTIGISVDHRRTNRSLATMQNNVARLKEYQSKLIIFPRRSNAKPKAGDAAPGDTAAAAQVTGAVMPLTKAVPAVAFAAVTDEMKAFKAYEALRVARSDARLVGIRKKQAAEKKDA 204
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: K8Z7Z7_NANGC (Large subunit ribosomal protein L13e n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7Z7_NANGC) HSP 1 Score: 238 bits (606), Expect = 4.530e-73 Identity = 122/194 (62.89%), Postives = 145/194 (74.74%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQLLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIR 582
MV+HNNV+PNQHFHK WQ RV+TWF QPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLGRGF M ELKEAGL+KK A ++GIAVDHRRT+ S + Q+NV RLKEY++ LIVFP G PK GDSS + +A Q TG +PL KK VEFV V+ E+K H+ R+ARN+ K+ GIR
Sbjct: 1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIR 194
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A2D4BG90_PYTIN (60S ribosomal protein L13 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG90_PYTIN) HSP 1 Score: 233 bits (594), Expect = 2.850e-71 Identity = 118/205 (57.56%), Postives = 157/205 (76.59%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
MVKHNNV+PN HFHK WQRR++TWFDQ AKKKARR R+ KAA +APRP LLRP VHCPT+KY SKVR G+GF+++ELKEAG+SKK AL+IGIAVD+RRT+KS + Q+NV RLK Y+A L++FPR N PK GDS+ ++ A+A QVTG P+ + E +T EMK T+++++ R+AR ++++AG + ++ ADK AA
Sbjct: 1 MVKHNNVIPNGHFHKDWQRRIKTWFDQAAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQVTGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAGKQKKRLADKAAA 205
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A1V9ZEJ6_9STRA (60S ribosomal protein L13 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZEJ6_9STRA) HSP 1 Score: 228 bits (580), Expect = 3.670e-69 Identity = 113/205 (55.12%), Postives = 154/205 (75.12%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
MVKHNNV+PN HFHK WQ R++TWFDQ +KKK+RR R+ KAA +APRP LLRP VHCPT+KY SKVR GRGF +DELKEAG+S+K ALTIGIAVD+RRT+KS + Q+NV RLK Y++ L+VFPR + PK GDS+L++ +A Q TG +P+ + K + +T +MK T++ + R+AR ++++ G+R ++ A+K AA
Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQHTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAEKAAA 205
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A7R9WAC9_9STRA (60S ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA) HSP 1 Score: 227 bits (578), Expect = 7.300e-69 Identity = 114/198 (57.58%), Postives = 147/198 (74.24%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQ 591
MVKHNNV+PNQHFHK+WQ RV+TWFDQPAKKKARR AR+ KAA +APRP LLRP V CPT +YN+KVR GRGF ++ELK AG+SK+ A TIGIAVDHRR++KS AT Q NV RL Y+A L+VFPRG PK GD+S+++ ++ATQ+TG P+ EFV +T ++K N + RI R ++ G+R+++
Sbjct: 1 MVKHNNVVPNQHFHKQWQNRVKTWFDQPAKKKARRAARKAKAAAIAPRPAAGLLRPAVRCPTQRYNTKVRAGRGFTLEELKTAGISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQLTGPLFPITAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKR 198
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A7S2UYA0_9STRA (60S ribosomal protein L13 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA0_9STRA) HSP 1 Score: 223 bits (568), Expect = 2.070e-67 Identity = 118/202 (58.42%), Postives = 150/202 (74.26%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADK 603
MVKHNNV+PN H HKKWQRRV+TWFDQPAKKK RR AR+ KAAK+APRP LLRP VHC T KY+SK RLGRGF++ ELKEAG+ KK A TIGIAVDHRRT+KS Q+N+ARL E++A L+VFPR PK GDS+ ++ + ATQ+TG +P+VK + +E VT EMK + R+A+++++V G+R + A K
Sbjct: 1 MVKHNNVVPNVHCHKKWQRRVKTWFDQPAKKKNRRLARKAKAAKLAPRPVSGLLRPVVHCSTQKYSSKTRLGRGFSLAELKEAGIPKKVARTIGIAVDHRRTNKSVEAMQANIARLAEFKARLVVFPRKSNQKPKNGDSAPEETSQATQLTGPILPIVKTDE-LETAAVTDEMKNFKAFTSLRLAKSDARVLGLRASRAAAK 201
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A1V9ZTH1_9STRA (60S ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZTH1_9STRA) HSP 1 Score: 220 bits (560), Expect = 3.590e-66 Identity = 112/205 (54.63%), Postives = 147/205 (71.71%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAA 612
MVKHNNV+PN HFHK WQ R++TWFDQ AKKK+RR R+ KAA +APRP LLRP VHCPT+KY SKVR GRGF +DELKEAG+S+K ALTIGIAVD+RRT+KS + Q+NV RLK Y++ L+VFPR + PK GD+S ++ S Q G P+ +A V +T EMK ++ R+AR ++++ G+R ++ A+K A
Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRISKPKNGDASAEELKSVVQHKGALFPIARASTEVATAKITEEMKNDSVVKTLRLARADARLVGLRKKKAAEKAEA 205
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: A0A024TY88_9STRA (60S ribosomal protein L13 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TY88_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.940e-65 Identity = 108/203 (53.20%), Postives = 151/203 (74.38%), Query Frame = 1 Query: 4 VKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDA 609
+KHNNV+PN HFHK WQ R++TWFDQ +KKK+RR R+ KAA +APRP LLRP VHCPTIKY SKVR GRGF +DELKEAG+S+K ALTIG++VD+RRT+KS + Q+NV RLK Y++ L++FPR + PK GDS +++ +ATQ+ G +P+ + K V +T E+K ++ R+AR ++++ G+R ++KAD+ A
Sbjct: 1 MKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQLIGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLR-KKKADEKA 202
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Match: H3G8S1_PHYRM (60S ribosomal protein L13 n=5 Tax=Peronosporaceae TaxID=4777 RepID=H3G8S1_PHYRM) HSP 1 Score: 216 bits (549), Expect = 1.530e-64 Identity = 110/206 (53.40%), Postives = 148/206 (71.84%), Query Frame = 1 Query: 1 MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTQ-LLRPGVHCPTIKYNSKVRLGRGFNMDELKEAGLSKKTALTIGIAVDHRRTSKSEATFQSNVARLKEYRANLIVFPRGPKNDPKKGDSSLDQQASATQVTGVTMPLVKAKKPVEFVDVTAEMKGTNLHSERRIARNESKVAGIRLRQKADKDAAK 615
MVKHNNV+PN HFHK W+ R++TWFDQ AKKK RR AR+ KAA +APRP LLRP VHCPTIKY SKVR G+GF ++ELKEAG+++K A++IGIAVD RRT+KS + Q+NV RLK Y+A L+VFPR N PK GDSS ++ +A Q TG +P+ ++ +T EMK ++ ++ R+AR + ++ G + ++ ADK K
Sbjct: 1 MVKHNNVIPNGHFHKYWESRIKTWFDQAAKKKTRRLARKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGKGFTLEELKEAGINRKQAISIGIAVDFRRTNKSVESLQANVHRLKAYKAKLVVFPRKSVNKPKNGDSSPEETKNAVQYTGAILPITRSSVKSTTAVITPEMKEKSVFTQLRVARADKRIFGKQAKRLADKKEKK 206 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9651.17344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9651.17344.1 >prot_H-paniculata_contig9651.17344.1 ID=prot_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp MVKHNNVLPNQHFHKKWQRRVRTWFDQPAKKKARRQARQLKAAKMAPRPTback to top mRNA from alignment at H-paniculata_contig9651:3114..8365+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9651.17344.1 ID=mRNA_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5252bp|location=Sequence derived from alignment at H-paniculata_contig9651:3114..8365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9651:3114..8365+ >mRNA_H-paniculata_contig9651.17344.1 ID=mRNA_H-paniculata_contig9651.17344.1|Name=mRNA_H-paniculata_contig9651.17344.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig9651:3114..8365+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |