mRNA_H-paniculata_contig965.17341.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 149 bits (375), Expect = 6.140e-40 Identity = 80/157 (50.96%), Postives = 92/157 (58.60%), Query Frame = 1 Query: 1 DFDGKIRIWRVCVIEKTQRNSAR-------------------RERG----QQYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLV 402 DFDGKI IWR+CVIE QR+S + R R ++YEFD TID EWY+ WY D LLPA+K+ MPWL + VV QQD A+PH GK P LN G W V LVTQPAQSPDLN NDLG F LK VW +I +LV Sbjct: 208 DFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: UPI00053FEDAB (uncharacterized protein LOC104888959 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEDAB) HSP 1 Score: 117 bits (292), Expect = 1.760e-28 Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERG-QQYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAV 609 FDGKI I+ TQRNS R+RG ++ +I + + LLPA+K N P +++ QQD A PH+ D L DG +++ LV QP QSPDLN DLGFF ++SI +TI +LV+ V++ DAYD + + W + EVLK GGN+++ H +K G LP V++ +E D + Sbjct: 60 FDGKIGIFPFVEDYITQRNSIDRDRGTRELRAKQSITKDVIRDMIIQVLLPAIKSNWPEFGCKQIWIQQDNARPHIKPDDEAFLQAASTDG-FDILLVYQPPQSPDLNLLDLGFFKSIQSIQHTNFPETIEELVKSVQAEYDAYDPKTINYTWLHFMYVMLEVLKVEGGNNYKNPHKGKKKLDSMGQLPTFVEVSQELVDDTI 261
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2) HSP 1 Score: 112 bits (281), Expect = 2.960e-27 Identity = 65/206 (31.55%), Postives = 112/206 (54.37%), Query Frame = 1 Query: 1 DFDGKIRIWRVCVIEKTQRNSARRERGQ-QYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAVEW 615 ++DGK ++ QR+S RE+G + + TI + +K + ++PA++ P + + QQD A PH+ D P L E +DG ++++L+ QPAQSPDLN DLGFF +++I +E +++ +LVE V + +YD + W + E++K GGN+F+ H ++ QR G LP V++ E ++ + Sbjct: 16 NWDGKTGMFPFTEQVPAQRSSKNREKGTIETKAKQTITRDIIKKMILEEVMPAIRATWPENSCKTIWIQQDNARPHINIDDPEFLEEANKDG-FDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYVEVSNELVLDSINF 220
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA) HSP 1 Score: 117 bits (292), Expect = 3.150e-27 Identity = 70/204 (34.31%), Postives = 107/204 (52.45%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQQYEFDM-TIDTEWYQKWYKDSLLPALKKNMP-WLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAV 609 FDGKI IW Q +S R G ++ T++ E Y+++ + ++PA+K P W + +V QQD ATPH P L DG WN+ L QPA SPDLNT DLG+F ++++ +RE I L++ ++ A + L+ + +L V++A G N++++ H K +R G LP S D +AF AV Sbjct: 252 FDGKIGIWDFTHKVDAQHSSKNRPAGTLETKNLDTVNREVYKRYLLEHIIPAIKSKWPVWDKSSPIVIQQDNATPHCQPTDPDILAAGVADG-WNIRLAFQPANSPDLNTLDLGYFASIQALPYREDCCDIVQLIQAIRKSYAALEVYKLDNITLTLQSSMECVMRAAGSNEYKLPHAGKSKIRREGKLPHSFPCDLDAFRHAV 454
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 109 bits (273), Expect = 1.430e-24 Identity = 57/175 (32.57%), Postives = 92/175 (52.57%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQQYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQH 528 +DGK+ +W + +R S R+RG MT+ Y+++ D ++PA++ P G + QQD A PH+ D P L GR WN+ L+ QPAQSPD N DLGFF ++S+ + TI DL++ V+ + L+ + +L K E +++ G N +++ H Sbjct: 227 WDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLA-AGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPH 400
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499) HSP 1 Score: 107 bits (266), Expect = 1.960e-24 Identity = 67/212 (31.60%), Postives = 108/212 (50.94%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQQYEFDMTIDTEWYQKWYKD--------SLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAVEW 615 +DGKI I RNS R++G TI+T+ Q K+ LLPA+K P +++ QQD A PH+ + L +DG +N+ LV QPAQSPD+N DLGFF ++SI ++ D++ L+E V++ A D++ + W L E+L+ GGN+++ H +K +R G LP +++ + + + Sbjct: 79 WDGKIGITPFVEDVAAIRNSKNRDKG-------TIETKALQSITKEVIRSKMIEDLLPAIKSKWPSNACKDIWIQQDNARPHISPNDREFLEAATQDG-FNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEIEVSEKLLEETTNY 282
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV) HSP 1 Score: 107 bits (268), Expect = 1.010e-23 Identity = 68/203 (33.50%), Postives = 108/203 (53.20%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQ-QYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAV 609 +DGKI I+ + QR SA R G + + +I E ++ + LLPA++ P +E+ QQD A PH+ + L E R+G + +N++ QPAQSPDLN DLGFF ++SI + T+ +L++ V+ Y+ + W L+ E+LK GGN+++ H + +K R G LP +V+I E + V Sbjct: 292 WDGKIGIFPFIDEVRAQRWSANRPAGTIEKKAKQSITKETIREMIINKLLPAIRAKWPENGCKEIWIQQDNARPHIQPNDAEFL-EACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVEISEELVNDTV 493
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527) HSP 1 Score: 107 bits (268), Expect = 1.040e-23 Identity = 56/159 (35.22%), Postives = 93/159 (58.49%), Query Frame = 1 Query: 139 DSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKIDREAFDTAVEW 615 ++++PA+ +N P +E+ QQD A PH+ P+ + ++G +N+ L+ QPAQSPDLN DLGFF ++++ ++ + +L+ V+ D +D E L+ W L E+LK GGN+F+ H RK +R G LP++V +D+ D AV + Sbjct: 348 NTIIPAIMRNWPEGVSKEIYIQQDNARPHIHASDPQFIAAATQNG-FNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAVTY 505
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D) HSP 1 Score: 107 bits (268), Expect = 1.210e-23 Identity = 62/194 (31.96%), Postives = 104/194 (53.61%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQ-QYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSVKI 582 FDGK+ I+ +R+S RERG + + ++ E ++ D LLPA++ PW ++++ QQD + PH+ + L+ ++G +N+ L+ QP QSPDLN DLGFF ++S+ ++ + LV+ VK +AYD + + W L E+L GGN+++ H K G LP +V++ Sbjct: 329 FDGKLGIFPFTEEVPAKRSSKNRERGTIEIKAITSVTKEVIRRKIIDELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLDAATQEG-FNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTWLQLQYVMLEILGVKGGNNYKSPHKGKAKMDNLGLLPDTVEV 521
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.350e-23 Identity = 63/191 (32.98%), Postives = 94/191 (49.21%), Query Frame = 1 Query: 4 FDGKIRIWRVCVIEKTQRNSARRERGQQYEFDMTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKLNELGRDGRWNVNLVTQPAQSPDLNTNDLGFFTFLKSIVWRERYDTIYDLVEWVKSMCDAYDAENLETVWQSLLK*YNEVLKALGGNDFEVQHTTTRKRQRAGNLPKSV 576 +DGKI +W + QR S RERG +T+ + Y+++ + ++P +KK P + QQD A PH+ D + G W++ LV QPA SPD N DLGFF ++++ RE I DLV V D D L+ + +L + E LK G N F++ H+ K R G + + V Sbjct: 227 WDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWPGRRSHPIYIQQDNARPHVEVDDAA-VTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRAFDDLDWSVLDKTFMTLQRVMGEALKMGGDNAFKLPHSKKDKTARLGPVARVV 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig965.17341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig965.17341.1 >prot_H-paniculata_contig965.17341.1 ID=prot_H-paniculata_contig965.17341.1|Name=mRNA_H-paniculata_contig965.17341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp MTIDTEWYQKWYKDSLLPALKKNMPWLEGEEVVAQQDEATPHMGKDTPRKback to top mRNA from alignment at H-paniculata_contig965:14189..14803- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig965.17341.1 ID=mRNA_H-paniculata_contig965.17341.1|Name=mRNA_H-paniculata_contig965.17341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=615bp|location=Sequence derived from alignment at H-paniculata_contig965:14189..14803- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig965:14189..14803- >mRNA_H-paniculata_contig965.17341.1 ID=mRNA_H-paniculata_contig965.17341.1|Name=mRNA_H-paniculata_contig965.17341.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig965:14189..14803- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |