mRNA_H-paniculata_contig9647.17336.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9647.17336.1 vs. uniprot
Match: A0A6H5K807_9PHAE (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K807_9PHAE) HSP 1 Score: 144 bits (362), Expect = 8.180e-34 Identity = 132/417 (31.65%), Postives = 180/417 (43.17%), Query Frame = 1 Query: 1 LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGGTGXDGGMTEGPAGTPAVAATATATDVEMVMCWWGDNDMGKGSKCEEREGGGSEDGKQGSGVKSESADTSHKSVQGERRAGGDFVGRMAQANIGPTMRACREKGLIRDEKVRGGGVEKKIHREPHQERHLGCGCREVPFPPGLFSVAKKVNLEPDIRFFREVCCPDLDWVGQGLISPPPRISFEGPSAASDNKNGRRQSASADRRGETSAATDAEEGGVRRGMLSVPAEDTQAEPKTETNSMDFVPFREQPPNPMMSGSHSMWSSSTTTGIGESQQSAVEMSSFGGSSADMPKAKAXXXXXXXXXXXKAETTAETAAAKSKISLLMLDLFEWLGAASCGLEAQLRRNPFPPEPYLSEFVTPQHLQYRQ 1251
+GV GG AGG DR++S DLS+++FRPGK LHDR+L+CL + G+G DG V+MV+ W G +G+GS G+ G ++ES+ TS S Q G A +G R KG + K G ++ C CR++ FPPG FS A++V+L PDIRFFRE CCPDLD+VGQGL + P R+G + A T NS T+T ++ V+ S GGS + ++ +AK LL+LD+FEWLGA SCGL+A +RR+P PPEPYLS+F TP+HL+YR+
Sbjct: 207 VGVLGGSAGGPDRYVSAVDLSAKSFRPGKPLHDRVLSCLSSC-----RWGSGDDGAA------------------VDMVVHWCGSGGVGQGS------------GEGGELAEAESSGTSEASGQAPEGCG------QGAAAVGR-----RPKGECAEGKQEG-------------QQSQQC-CRDITFPPG-FS-AERVDLTPDIRFFREACCPDLDFVGQGLAATAPTTVQRA---------------------------------RRKGRKGIEA--------TAFNS-------------------------TSTA-----ENLVDGSDDGGSDDHFTDRR--------HPRLPPPVASQPESAKC---LLVLDMFEWLGAVSCGLDAAVRRSPSPPEPYLSKFETPRHLRYRR 479 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9647.17336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9647.17336.1 >prot_H-paniculata_contig9647.17336.1 ID=prot_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=435bp LGVAGGGAGGADRFISVFDLSSRTFRPGKALHDRLLACLGAAGGGGKIGGback to top mRNA from alignment at H-paniculata_contig9647:4410..5714+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9647:4410..5714+ >mRNA_H-paniculata_contig9647.17336.1 ID=mRNA_H-paniculata_contig9647.17336.1|Name=mRNA_H-paniculata_contig9647.17336.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2610bp|location=Sequence derived from alignment at H-paniculata_contig9647:4410..5714+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |