mRNA_H-paniculata_contig9629.17325.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D7FIH1_ECTSI (Eukaryotic translation initiation factor 4E like2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH1_ECTSI) HSP 1 Score: 338 bits (867), Expect = 3.630e-113 Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQRQ 554
YDKKMPKK QDQT YQASLHK GSFNT+EGFWKNYVHLKRPS I NVN+YLFRD GHVPMWERYPNGGCWILRIRKK+GQTNTSVLGKMWQDLVLAV+GEMFEEPNVVGIGMAIRSREDLLSVWNEDNSN +VRF IGE LKQVLDLE STLIEYKHH+ AMQDMSTFRNA+AY FA T+ Q
Sbjct: 38 YDKKMPKKTQDQTQYQASLHKAGSFNTLEGFWKNYVHLKRPSNISINVNVYLFRDERGHVPMWERYPNGGCWILRIRKKSGQTNTSVLGKMWQDLVLAVVGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNEKVRFNIGERLKQVLDLEPSTLIEYKHHQTAMQDMSTFRNAKAYCFAVTKGQ 221
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A8K1CP93_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP93_PYTOL) HSP 1 Score: 241 bits (614), Expect = 3.800e-75 Identity = 113/180 (62.78%), Postives = 144/180 (80.00%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
YDKK+PKK D YQ++L K+ +F+TVE FW++Y+H+KRPS++ +VN+YLFRD PMWE +PNGGCWIL+I+KKA +VLGKMWQDLV A +GE FEE +VVGI MAIRS+ED++SVWN DNSN E RF IGE LK++L L+A+TLIEYK H +++DMSTFRNA+ YVFAA
Sbjct: 32 YDKKLPKKI-DVGTYQSNLQKIAAFSTVEDFWRHYIHIKRPSQLNRDVNLYLFRDRPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLVFAAVGEAFEELDVVGIAMAIRSKEDMISVWNADNSNEETRFKIGEKLKEILMLDANTLIEYKFHANSIKDMSTFRNAKPYVFAA 205
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A836CBD6_9STRA (Putative eukaryotic initiation factor 4E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBD6_9STRA) HSP 1 Score: 241 bits (615), Expect = 5.020e-75 Identity = 117/184 (63.59%), Postives = 141/184 (76.63%), Query Frame = 3 Query: 3 YDKKMPKKAQ-DQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNS-NPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAATQ 548
YDKK K D Y+A+LHKV +F+TVE FW+ Y H+KRPS + N+N+Y FRD P WE +PNGGCWIL+I+K+A + TSVLGKMWQDLV A IGE FEEP VVG+GMA+RS+EDLLSVWN DNS N VRFAIGE LK +LDLE ST+IEYKH +M+DMST+R+A+ YVFAA Q
Sbjct: 44 YDKKHKKGGTGDYNEYKANLHKVHTFSTVEDFWRLYTHIKRPSALENNINMYFFRDAPNSSPSWESFPNGGCWILKIKKRA-HSGTSVLGKMWQDLVFAAIGECFEEPTVVGVGMAVRSKEDLLSVWNSDNSGNDAVRFAIGEKLKAILDLEPSTMIEYKHFASSMEDMSTYRHAKPYVFAAAQ 226
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A024TXL0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXL0_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.650e-74 Identity = 110/181 (60.77%), Postives = 146/181 (80.66%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
+DKKMPK+ D + YQ++L K+ +FNTVE FW++Y+H+KRPS++ + N+YLFRD PMWE +PNGGCWIL+I+KKA +VLGKMWQDL+ AVIGE FE NVVGI MA+RS+ED++SVWN DNS+ +RFAIGE LK++L L+++TLIEYK H +++DMSTFRNA+ YVFAA+
Sbjct: 25 FDKKMPKRT-DVSTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLAKDTNLYLFRDQPNCAPMWEAFPNGGCWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNIRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 199
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0N871_PHYIT (Eukaryotic initiation factor 4E, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N871_PHYIT) HSP 1 Score: 238 bits (606), Expect = 5.340e-74 Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
YDKKMPKK D YQ++L K+ +FNTVE FW++Y+H+KRPS++ +VN+YLFRD PMWE +P GGCWIL+I+KKA +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+ RFAIGE LK++L L+++TL+EYK H +++DMSTFRNA+ YVFAA
Sbjct: 26 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 199
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: W2PGT1_PHYPN (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=W2PGT1_PHYPN) HSP 1 Score: 238 bits (606), Expect = 7.420e-74 Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
YDKKMPKK D YQ++L K+ +FNTVE FW++Y+H+KRPS++ +VN+YLFRD PMWE +P GGCWIL+I+KKA +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+ RFAIGE LK++L L+++TL+EYK H +++DMSTFRNA+ YVFAA
Sbjct: 36 YDKKMPKKI-DVGTYQSNLQKIATFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 209
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: D0P4V5_PHYIT (Eukaryotic initiation factor 4E, putative n=2 Tax=Phytophthora TaxID=4783 RepID=D0P4V5_PHYIT) HSP 1 Score: 238 bits (606), Expect = 1.060e-73 Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAA 542
YDKKMPKK D YQ++L K+ +FNTVE FW++Y+H+KRPS++ +VN+YLFRD PMWE +P GGCWIL+I+KKA +VLGKMWQDLV A IGE FE+ +VVGI MAIRS+ED+LSVWN DNS+ RFAIGE LK++L L+++TL+EYK H +++DMSTFRNA+ YVFAA
Sbjct: 47 YDKKMPKKI-DVGTYQSNLQKIANFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEAFEQLDVVGIAMAIRSKEDMLSVWNADNSDDNTRFAIGEKLKEILMLDSNTLVEYKFHANSIRDMSTFRNAKPYVFAA 220
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: K3WZ97_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ97_GLOUD) HSP 1 Score: 234 bits (598), Expect = 8.010e-73 Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
YDKK+PKK D YQ++L K+ FNTVE FW++Y+H+KRPS++ +VN+YLFRD PMWE +P GGCWIL+I+KKA +VLGKMWQDLV A IGE+F +VVGI MAIRS+ED+LSVWN DNS+ RF IGE LK++L L+++TLIEYK H +++DMSTFRNA+ YVFAAT
Sbjct: 29 YDKKLPKKI-DVGTYQSNLQKIAQFNTVEDFWRHYIHVKRPSQLSRDVNLYLFRDQPNCAPMWEAFPQGGCWILKIKKKA-----NVLGKMWQDLVFAAIGEVFASRDVVGIAMAIRSKEDMLSVWNADNSDDSTRFEIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAT 203
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: F0W9A8_9STRA (Eukaryotic initiation factor 4E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W9A8_9STRA) HSP 1 Score: 233 bits (593), Expect = 5.170e-72 Identity = 108/181 (59.67%), Postives = 144/181 (79.56%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
YDKK+P+ D Y+++LH++ +F+TVE FW++YVHLKRPS++ ++N+Y+FRD PMWE +P+GGCWIL+I+KKA +VLGKMWQDLV A IGE+F + NVVGI MAIRS+ED+LSVWN DNS VRF+IGE LK++L L+ +TLIEYK H +++DMSTFRNA++YVFA T
Sbjct: 26 YDKKLPRNV-DVGTYRSNLHRIATFSTVEDFWRHYVHLKRPSELHRDINLYMFRDLPKCAPMWEAFPHGGCWILKIKKKA-----NVLGKMWQDLVFAAIGELFGQANVVGIAMAIRSKEDMLSVWNADNSEDSVRFSIGEKLKEILMLDPNTLIEYKFHANSIRDMSTFRNAKSYVFATT 200
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Match: A0A485KQ57_9STRA (Aste57867_10365 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ57_9STRA) HSP 1 Score: 233 bits (593), Expect = 1.620e-71 Identity = 109/181 (60.22%), Postives = 145/181 (80.11%), Query Frame = 3 Query: 3 YDKKMPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRDGHGHVPMWERYPNGGCWILRIRKKAGQTNTSVLGKMWQDLVLAVIGEMFEEPNVVGIGMAIRSREDLLSVWNEDNSNPEVRFAIGETLKQVLDLEASTLIEYKHHEVAMQDMSTFRNAQAYVFAAT 545
+DKKMPK+ D + YQ++L K+ +F+TVE FW++Y+H+KRPS++ + N+YLFRD PMWE +PNGG WIL+I+KKA +VLGKMWQDL+ AVIGE FE NVVGI MA+RS+ED++SVWN DNS+ VRFAIGE LK++L L+++TLIEYK H +++DMSTFRNA+ YVFAA+
Sbjct: 68 FDKKMPKRT-DVSTYQSNLQKIANFSTVEDFWRHYIHVKRPSQLSKDTNLYLFRDQPNCAPMWEAFPNGGGWILKIKKKA-----NVLGKMWQDLLFAVIGEAFETLNVVGIAMALRSKEDMISVWNADNSDDNVRFAIGEKLKEILMLDSNTLIEYKFHANSIRDMSTFRNAKPYVFAAS 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9629.17325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9629.17325.1 >prot_H-paniculata_contig9629.17325.1 ID=prot_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp MPKKAQDQTAYQASLHKVGSFNTVEGFWKNYVHLKRPSKIGTNVNIYLFRback to top mRNA from alignment at H-paniculata_contig9629:3980..8802- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4823bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9629:3980..8802- >mRNA_H-paniculata_contig9629.17325.1 ID=mRNA_H-paniculata_contig9629.17325.1|Name=mRNA_H-paniculata_contig9629.17325.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig9629:3980..8802- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |