mRNA_H-paniculata_contig961.17310.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: D8LQT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQT6_ECTSI) HSP 1 Score: 200 bits (509), Expect = 8.110e-57 Identity = 118/178 (66.29%), Postives = 142/178 (79.78%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV--NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPLPLSREEIEAKLPSA 530
YIGVFG+PANK+AGG++GE I+MTAPVVTG P+ + XXXXXXXXXXXX G+ MQFIMP++FK ISDLPTPTDSRV+LREVPE YLV QF+GNMG+ +A AE R++A E V + GGAF+EYV D+KFLVARY+PPWT+PFL+TNELWFP+PLS E AKLP+A
Sbjct: 55 YIGVFGNPANKVAGGDAGENIAMTAPVVTGDPTPDXXXXXXXXXXXXXXX----GTGTSTMQFIMPKQFKRISDLPTPTDSRVSLREVPEAVYLVHQFSGNMGRGDGHDAIAERERIVAVEKVASE-GGAFSEYVSADSKFLVARYDPPWTLPFLRTNELWFPVPLSPTEATAKLPTA 227
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A166AQM7_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166AQM7_DAUCS) HSP 1 Score: 90.1 bits (222), Expect = 5.500e-17 Identity = 73/163 (44.79%), Postives = 96/163 (58.90%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKI-MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G+P NK E I+MTAPV+T + XXXXXXXXXXX + G GS+ I MQFI+P K+K + P P D RV +RE E Y V +F+G ++V AE V L E +++D + VG +FL+ RYNPPWT+P KTNE+ P+
Sbjct: 58 YIGALGNPQNK-----KPETIAMTAPVIT----QKXXXXXXXXXXXXTNSGGDGGSEGVIVMQFILPDKYKKAEEAPEPVDERVVVREQGERKYAVVKFSGTATEEV--VAEKVGKL-REWLERDG----VKVVG---EFLLGRYNPPWTLPRFKTNEVMIPV 201
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A6J0JCA9_RAPSA (heme-binding-like protein At3g10130, chloroplastic n=13 Tax=Brassiceae TaxID=981071 RepID=A0A6J0JCA9_RAPSA) HSP 1 Score: 90.5 bits (223), Expect = 8.330e-17 Identity = 72/164 (43.90%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKI--MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIGVFG P N + E+I+MTAPV+T + XXXXXXXXXXX G G + K MQF++P+ +K D P PTD RV ++E Y V F+GN AAESV E VKK + +F++ARYNPPWT+P KTNE+ P+
Sbjct: 91 YIGVFGKPEN-----QKPEKIAMTAPVIT-----KEGXXXXXXXXXXXXXGGGGGEEKKTVTMQFLLPEMYKKAEDAPRPTDERVVIKEEGGRKYGVVTFSGN-------AAESV---VSEKVKKLRSDLERDGFKITGEFVLARYNPPWTIPPFKTNEVMIPV 234
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A199VJZ7_ANACO (Heme-binding-like protein, chloroplastic n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199VJZ7_ANACO) HSP 1 Score: 89.4 bits (220), Expect = 1.020e-16 Identity = 68/162 (41.98%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G P N E+I+MTAPVVT XXXXXXXXXX + G G +A MQFI+P ++++ ++ P P D RV +RE E Y V +F+G A E V E++KK + G +FL+ARYNPPWT+P L+TNE+ P+
Sbjct: 58 YIGALGAPRNA-----KPEKIAMTAPVVT---KTSAAAXXXXXXXXXXTSGGGGGGEAVTMQFILPARYRAAAEAPRPLDERVVVREEAERKYAVARFSG-------VATEKVVAEKVESLKKSLERDGYKITG---EFLLARYNPPWTLPPLRTNEVMIPV 201
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A7S4F7T4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F7T4_CHRCT) HSP 1 Score: 89.4 bits (220), Expect = 1.190e-16 Identity = 72/179 (40.22%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVV-TGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV--NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPLPLSREEIEAKLPSA 530
YIGVFG P N GG S I+MTAPVV +G P XXXXXX D K M FI+P +F+S++D P+PT+ V+LR++ F+G+ +D E LL+E+ + +G A K+ VARYNPPWT+PFL+TNE+ P+P E+ +PSA
Sbjct: 58 YIGVFGTPEN---GGSSA--IAMTAPVVNSGMPXXXXXXXXXX--------------DGK-MAFILPARFQSVADAPSPTNPLVSLRQIESRVMAALTFSGSANEDSVHRKLKELQALLSEKGIAMKDGAA--------PKYEVARYNPPWTLPFLRTNEVLIPVP------ESAVPSA 202
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A833R6P0_9POAL (Heme-binding-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R6P0_9POAL) HSP 1 Score: 88.6 bits (218), Expect = 1.710e-16 Identity = 64/162 (39.51%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G P N E+I+MTAPV+T XXXXXXX G MQF++P K++ + D P PTD RV ++E E Y V +F+G M D E VR L E + + G FL+ARYNPPWT+P L+TNE+ P+
Sbjct: 58 YIGALGQPQNS-----KPEKIAMTAPVIT-------KTSPEXXXXXXXXXXXXTGDGMVTMQFVLPSKYQKVDDAPKPTDERVVIKEEGEKKYAVVRFSG-MATD-KVVEEKVRKLKESLERDGHKGV--------GDFLLARYNPPWTLPPLRTNEIMIPV 197
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI001F5CDDB5 (heme-binding-like protein At3g10130, chloroplastic n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDDB5) HSP 1 Score: 89.4 bits (220), Expect = 2.000e-16 Identity = 78/180 (43.33%), Postives = 98/180 (54.44%), Query Frame = 3 Query: 3 YIGVFGDPAN----KIAGGESGEQISMTAPVVTGP-------------PSLETXXXXXXXXXXXXQTSGAPGSDAKI-MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIGVFG P N KIA G E+I+MTAPV+T + XXXXXXXXXXX G K+ MQF++P K+ + P PTD RV LREV E Y V +F G G V AE V L + A++KD GP F+++RYNPPWT+P L+TNE+ P+
Sbjct: 63 YIGVFGKPQNTKPEKIASGGEPEEIAMTAPVITSSGXXXXXXXXXXXXXXXSSEXXXXXXXXXXXXXEGREEQAGKVTMQFLLPSKYGKAEEAPRPTDERVVLREVGERKYGVVRFGGLTGDKV--VAEKVEGL-KAALEKDGH----TITGP---FVLSRYNPPWTLPPLRTNEVMIPV 232
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI0009E2B2B6 (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2B2B6) HSP 1 Score: 87.8 bits (216), Expect = 3.100e-16 Identity = 67/162 (41.36%), Postives = 91/162 (56.17%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G+P N E+I MTAPV+T XXXXXXXXX SG GS MQF++P K+ D P PTD RV +REV E Y V +F+G + + AA + +L +++++D E+V +ARYNPPWT+P L+TNE+ P+
Sbjct: 57 YIGAVGEPQNSRP-----EKIPMTAPVIT-------HSAXXXXXXXXXXXSGGGGSTPITMQFVLPAKYARAEDAPQPTDERVRIREVGERKYGVVRFSG-VATETTAADRAEKL--RKSLERDGYKLVGEHV-------LARYNPPWTLPPLRTNEVMLPI 196
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: A0A803LUY4_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LUY4_CHEQI) HSP 1 Score: 87.8 bits (216), Expect = 4.150e-16 Identity = 72/168 (42.86%), Postives = 97/168 (57.74%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXX--QTSG-APGSDAKI--MQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDV-NAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G+P N A E ++MTAPVVT + + XXXXXXXXXXX Q G A G + K+ MQFI+P K+K + D P P D RV ++E E Y V +F+G V E +R+ A++KD E+ L+ARYNPPWT+PF +TNE++ P+
Sbjct: 58 YIGALGNPQNNKA-----ESVAMTAPVVTQSKAEDVGXXXXXXXXXXXXEQRGGVAEGGEKKMITMQFILPDKYKRVEDAPKPLDERVVIKEEGERKYGVVKFSGVASDGVVKDKVEGLRI----ALEKDGYKVIGEH-------LLARYNPPWTLPFCRTNEVFIPV 209
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Match: UPI000B8CA61E (heme-binding-like protein At3g10130, chloroplastic n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CA61E) HSP 1 Score: 87.8 bits (216), Expect = 5.500e-16 Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = 3 Query: 3 YIGVFGDPANKIAGGESGEQISMTAPVVTGPPSLETXXXXXXXXXXXXQTSGAPGSDAKIMQFIMPQKFKSISDLPTPTDSRVTLREVPELSYLVWQFTGNMGKDVNAAAESVRLLAEEAVKKDNGGAFAEYVGPDAKFLVARYNPPWTVPFLKTNELWFPL 488
YIG G+P N E+I+MTAPV+T TXXXXXXXXXXXX+ G + A MQF++P K++ + P P D RV +RE E Y V +F G +DV E V L ++++KD E FL+ARYNPPWT+P L+TNE+ P+
Sbjct: 79 YIGALGNPQNA-----KPEKIAMTAPVIT---QSSTXXXXXXXXXXXXKGGGGGENKAVTMQFLLPAKYQKAEEAPKPLDERVVIREEGERKYGVVRFAGVATEDV--VNEKVNKL-RKSLEKDGYKVIGE-------FLLARYNPPWTLPTLRTNEVMIPV 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig961.17310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig961.17310.1 >prot_H-paniculata_contig961.17310.1 ID=prot_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp MTAPVVTGPPSLETGAKISMTAPVVTQTSGAPGSDAKIMQFIMPQKFKSIback to top mRNA from alignment at H-paniculata_contig961:488..5795+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig961.17310.1 ID=mRNA_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5308bp|location=Sequence derived from alignment at H-paniculata_contig961:488..5795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig961:488..5795+ >mRNA_H-paniculata_contig961.17310.1 ID=mRNA_H-paniculata_contig961.17310.1|Name=mRNA_H-paniculata_contig961.17310.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig961:488..5795+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |