mRNA_H-paniculata_contig9609.17309.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE) HSP 1 Score: 362 bits (930), Expect = 1.330e-110 Identity = 193/254 (75.98%), Postives = 210/254 (82.68%), Query Frame = 1 Query: 58 VPSTMTGILGPSGAGKSSLLDLLAGRKRKGEG-----VSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRRSSMA 804 VPSTMTGILGPSGAGKSSLLDL+AGRKR+GEG VS G G EAVRRV GYV QEDVLPGTL+CYEHLMFHARLRMP AS+ +R RVLWV E LGL RVADSRIGDEL RGLSGGERRRLSIA ELVARPALLF DEPTTGLDAATALRVM LL GVA+RGTT+LCSLHQPRP+V +LLD+V+LLS G+VAY G P DA +F SVGRPFP Q HPADAML+L CR+DG DLP+LFRRS +A Sbjct: 527 VPSTMTGILGPSGAGKSSLLDLVAGRKRRGEGRTTGSVSLAYDGTGNGNGVEAVRRVGGYVSQEDVLPGTLTCYEHLMFHARLRMPPGASFAEREERVLWVTEELGLQRVADSRIGDELERGLSGGERRRLSIATELVARPALLFADEPTTGLDAATALRVMTLLSGVASRGTTVLCSLHQPRPRVFSLLDRVILLSGGRVAYSGRPGDAEEFFRSVGRPFPRHQPHPADAMLSLVCREDGRDLPSLFRRSQLA 780
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE) HSP 1 Score: 353 bits (907), Expect = 4.350e-108 Identity = 185/250 (74.00%), Postives = 210/250 (84.00%), Query Frame = 1 Query: 58 VPSTMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV-----GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRR 792 +PST+TGILGPSGAGKSSLLD+LAGRKR GEG + +V G G +RRVAGYVPQEDVLPGTL+CYEHLMFHARLRMP +A++ +RR R L V+ LGLSRVADSR+GD RGLSGGE+RRLSIAAEL+A P LLFLDEPTTGLDAATALRVMVLL+GVA+RGTT+LCSLHQPRP+VLNLLD VMLLS+G+VAYFG+P + YF SVGRPFP +Q HPADAMLTL CR+DGG LPALF R Sbjct: 494 LPSTLTGILGPSGAGKSSLLDILAGRKRSGEGRASGQVFVSLDGRGGRGGPAEIRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKATHGERRERALAVLGELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGLDAATALRVMVLLKGVASRGTTVLCSLHQPRPRVLNLLDNVMLLSRGKVAYFGSPQGSESYFSSVGRPFPAEQPHPADAMLTLCCREDGGALPALFER 743
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI) HSP 1 Score: 355 bits (911), Expect = 4.570e-108 Identity = 187/248 (75.40%), Postives = 208/248 (83.87%), Query Frame = 1 Query: 64 STMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV-----GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYFFSVGRPFPEDQTHPADAMLTLTCRQDGGDLPALFRR 792 ST+TGILGPSGAGKSSLLD+LAGRKR GEG + V G G E +RRVAGYVPQEDVLPGTL+CYEHLMFHARLRMP +AS+ +RR R L V+ LGLSRVADSR+GD RGLSGGE+RRLSIAAEL+A P LLFLDEPTTGLDAATALRVMVLLRGVA+RGTT+LCSLHQPRP+VLNLLD VMLLS+G+VAYFG+P + YF SVGRPFP +Q HPADAMLTL CR+DGG LPALF R Sbjct: 594 STLTGILGPSGAGKSSLLDILAGRKRSGEGRASGHVSVSLDGRGGRGGPEDIRRVAGYVPQEDVLPGTLTCYEHLMFHARLRMPRKASHAERRERALAVLAELGLSRVADSRVGDARKRGLSGGEKRRLSIAAELMAGPPLLFLDEPTTGLDAATALRVMVLLRGVASRGTTVLCSLHQPRPRVLNLLDNVMLLSRGKVAYFGSPQGSESYFSSVGRPFPAEQPHPADAMLTLCCREDGGALPALFER 841
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A835Z9G6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G6_9STRA) HSP 1 Score: 214 bits (544), Expect = 9.840e-62 Identity = 123/214 (57.48%), Postives = 147/214 (68.69%), Query Frame = 1 Query: 70 MTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRVG-----GAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAE----ASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSKGQVAYFGAPADASRYF 684 +TG+LGPSGAGK++LL+LLAGR+ G G G GAAA E VR V+GYV Q+DVLPGTL+ YEHL FHA LR+P R ARVL VI+ LGL VADS IGD RG+SGGERRR+SIAAEL+ RP LLFLDEPT+GLDA +AL VM L+ A RGT ++ SLHQPR +V + L + +LL G+VAYFG P YF Sbjct: 1 VTGLLGPSGAGKTTLLELLAGRRAAGGAERGAWSGALELDGAAAASPEDVRAVSGYVAQDDVLPGTLTVYEHLAFHAALRLPRGHGRGGGATQRTARVLEVIDNLGLGAVADSLIGDAFRRGISGGERRRVSIAAELLTRPPLLFLDEPTSGLDAGSALAVMRLVAAAARRGTAVVASLHQPRREVFDALGRALLLCAGEVAYFGPPRGVRDYF 214
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7S0KCW1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KCW1_9CHLO) HSP 1 Score: 209 bits (531), Expect = 1.500e-58 Identity = 118/237 (49.79%), Postives = 164/237 (69.20%), Query Frame = 1 Query: 79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGRPF---PEDQTHPADAMLTLTCRQDGGDL 774 ILGPSGAGK++LLD+LAGR + + G RV G V ++ +RR++GYV Q+DVLPGT + +EHL+FHA+LR+P+ S E R RV +++LG+ ++ADS IGD+ RGLSGGE+RR+SIA EL+ P ++FLDEPTTGLD+ A +V+ +L + T GTT+L S+HQPRP + LLD+V++LS +G V Y G A AS +F S+ PF P H AD ML + + D+ Sbjct: 470 ILGPSGAGKTTLLDILAGRATRTHSIRGDIRVNGQPIVSSQ-IRRLSGYVTQDDVLPGTATVHEHLLFHAKLRLPSGTSSEAIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM--PFVTLPLADLHIADYMLDVVLKSSRSDV 703
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A4S3Q8_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q8_OSTLU) HSP 1 Score: 201 bits (512), Expect = 4.590e-56 Identity = 114/235 (48.51%), Postives = 158/235 (67.23%), Query Frame = 1 Query: 79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDL 774 +LGPSGAGK++LLD+LAGR + G RV G V ++ +RR++GYV Q+DVLPG + YEHL+FHA+LR+PAE +D V +++LG+ ++ADS IGD+ RGLSGGE+RR+SIA EL+ P ++FLDEPTTGLD+ A +V+ +L G+ GTT+L S+HQPRP + LLD+V++LS G V Y G A AS +F S+ P H AD ML + + D+ Sbjct: 152 MLGPSGAGKTTLLDILAGRAPSTHVIRGDIRVNGQPMVSSQ-IRRLSGYVTQDDVLPGNATVYEHLLFHAKLRLPAETPLDDICRCVDSTMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSGDGSVVYSGPSALASAHFNSMSFVSLPSADLHIADYMLDVVLKSPRSDV 385
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A4S3Q9_OSTLU (ABC(ABCG) family transporter: multidrug (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3Q9_OSTLU) HSP 1 Score: 198 bits (504), Expect = 9.890e-56 Identity = 116/247 (46.96%), Postives = 159/247 (64.37%), Query Frame = 1 Query: 49 LSNVPSTMTGILGPSGAGKSSLLDLLAGRKRKGEGVSGRRV---GGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDL 774 + +V M ++GPSGAGK++LLD L+GR S + G A+V E +R V+GYV EDVLPGT + YEHL+FHA+LR+PAE R RV +++LG+ ++ADS IGD+ RGLSGGE+RR+SIA EL+ P ++FLDEPTTGLD+ A +V+ +L G+ GTT+L S+HQPRP + LLD+V++LS G V Y G A AS +F S+ P H AD ML + + D+ Sbjct: 38 MDDVRGGMCALMGPSGAGKTTLLDRLSGRLSSNVYDSAGEIFMNGKVASV--EDMRAVSGYVIDEDVLPGTATVYEHLLFHAKLRLPAETRQSTIRKRVRATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSGDGSVVYSGPSALASAHFNSMSFVSLPSADLHIADYMLDVVLKSPRSDV 282
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7S0KBP1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KBP1_9CHLO) HSP 1 Score: 200 bits (509), Expect = 2.210e-55 Identity = 117/240 (48.75%), Postives = 156/240 (65.00%), Query Frame = 1 Query: 70 MTGILGPSGAGKSSLLDLLAGR-KRKGEGVSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLS-KGQVAYFGAPADASRYFFSVGRPF---PEDQTHPADAMLTLTCRQDGGDL 774 M I+GPSGAGK++LLD L+GR K G E VR ++GYV EDVLPGT + YEHLMFHA+LR+PA S + R RV +++LG+ ++ADS IGD+ RGLSGGE+RR+SIA EL+ P ++FLDEPTTGLD+ A +V+ +L + T GTT+L S+HQPRP + LLD+V++LS +G V Y G A AS +F S+ PF P H AD ML + + D+ Sbjct: 469 MCAIMGPSGAGKTTLLDRLSGRLSSKVYTTHGNVYINGKLASCEDVRSISGYVIAEDVLPGTATVYEHLMFHAKLRLPASTSSKTIRKRVCATMQILGIEKLADSFIGDQFQRGLSGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSSLGTMGTTVLLSIHQPRPDIFRLLDRVLVLSGEGSVVYSGPSALASAHFASM--PFVTLPLADLHIADYMLDVVLKSSRSDV 706
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A090M588_OSTTA (ABC transporter, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M588_OSTTA) HSP 1 Score: 203 bits (517), Expect = 2.910e-55 Identity = 113/240 (47.08%), Postives = 160/240 (66.67%), Query Frame = 1 Query: 79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGR-RVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSK-GQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDLPALFR 789 ILGPSGAGK++LLD+LAGR + + G R+ G V ++ +RR++GYV Q+DVLPG+ + YEHLMFHA+LR+P + D R RV +++LG+ ++ADS IGD+ RG+SGGE+RR+SIA EL+ P ++FLDEPTTGLD+ A +V+ +L G+ GTT+L S+HQPRP + LLD+V++LS G V Y G A AS +F S+ H AD ML + + + + R Sbjct: 1161 ILGPSGAGKTTLLDILAGRAPRTHIIRGDIRINGQPIVSSQ-IRRLSGYVTQDDVLPGSATVYEHLMFHAKLRLPGNTADTDVRKRVESTMQILGIEKLADSFIGDQFQRGISGGEKRRVSIATELLMSPGIMFLDEPTTGLDSTNAAKVVDILSGLGAMGTTVLLSIHQPRPDIFRLLDRVLVLSSDGNVVYSGPSALASSHFHSMSFVSMSSSDLHIADYMLDVVLKSPRSQVKRMVR 1399
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Match: A0A7R9Y6A1_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y6A1_MICPS) HSP 1 Score: 200 bits (509), Expect = 3.810e-55 Identity = 110/237 (46.41%), Postives = 154/237 (64.98%), Query Frame = 1 Query: 79 ILGPSGAGKSSLLDLLAGRKRKGEGVSGRRVGGAAAVGTEAVRRVAGYVPQEDVLPGTLSCYEHLMFHARLRMPAEASYEDRRARVLWVIEMLGLSRVADSRIGDELTRGLSGGERRRLSIAAELVARPALLFLDEPTTGLDAATALRVMVLLRGVATRGTTILCSLHQPRPQVLNLLDKVMLLSK-GQVAYFGAPADASRYFFSVGR-PFPEDQTHPADAMLTLTCRQDGGDLPAL 783 ILGPSGAGK++LLD+LAGR G ++G + +R V+GYVPQ+DVLPGT + +EHLMFHA LR+P + R+ V + LG++++A + IGD TRGLSGGE+RR+S+A EL+ P ++FLDEPTTGLDA A +V+ +L G+ G TIL S+HQPRP + LLD+V+++S G+V Y G DA +F S+ P + + AD ML + D D+ A+ Sbjct: 34 ILGPSGAGKTTLLDVLAGRPSPGHVITGDVALDGERMSNSELRHVSGYVPQDDVLPGTSTVWEHLMFHAALRLPGSVDRKRLRSVVWQTMRDLGITKLAHAHIGDAFTRGLSGGEKRRVSVATELLTSPGVMFLDEPTTGLDATNAAKVVDILAGLGALGVTILLSIHQPRPDIFRLLDRVLVMSSDGRVVYSGPSLDAEAHFESMRNVPRKPEAVNIADFMLDVVLSADDDDIDAM 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9609.17309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9609.17309.1 >prot_H-paniculata_contig9609.17309.1 ID=prot_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp GTVPAAAASHHRSALSLSNVPSTMTGILGPSGAGKSSLLDLLAGRKRKGEback to top mRNA from alignment at H-paniculata_contig9609:1293..2682- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9609.17309.1 ID=mRNA_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-paniculata_contig9609:1293..2682- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9609:1293..2682- >mRNA_H-paniculata_contig9609.17309.1 ID=mRNA_H-paniculata_contig9609.17309.1|Name=mRNA_H-paniculata_contig9609.17309.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig9609:1293..2682- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |