Homology
BLAST of mRNA_H-paniculata_contig96.17302.1 vs. uniprot
Match:
D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)
HSP 1 Score: 188 bits (477), Expect = 2.580e-55
Identity = 123/263 (46.77%), Postives = 159/263 (60.46%), Query Frame = 1
Query: 1 MHVASPALPESALRLLFYRAVATQHTTPSVSGGNSEGGDIASHRGARQSNTGSRVRRESMERSNRIGTEGGKGSSVGEGTKSGGNGVGGVKSVTPADLARAVVDFPLACEGLASLINATASTHGVRELLKQAVFRAKEAIEEAEKIVGAINDGQAGVAGRTSNGGGDGARVVQSEVEAVKARTSQLKAFISNAGTSRSPLDASKLWISRRMLVTESALLRTYGGILPTIKAQDAIRQGRRVRLRCALRRWQAVWRKKTLSAPP 789
MHVASP LPE+ALR LF++A T PS GGD RG + R++ + G+ S + KS G ++ + + LARA+ FPLACEGLA L+ +TA+ R LLKQ +AKEA+EE EK+V +I + Q AG+ V ++E+ AV+ARTSQL+AF+ NA TSRS LD SKLWISRRMLV E+ LLR YGG+ PT +AQDAIRQGRRVRLR R ++ WR+ +S PP
Sbjct: 1 MHVASPGLPEAALRHLFFQAATTGAPRPSSLPAARAGGD---GRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGETTSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKVVASIREAQGTPAGQRGXXXXXXXFVPEAEISAVEARTSQLRAFMINADTSRSVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPP 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig96.17302.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.58e-55 / Id = 46.77 Sequence D7FWR5_ECTSI
Match Name E-value Identity Description
D7FWR5_ECTSI 2.580e-55 46.77 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-21_004270.1 Exons 4 Model size 789 Cds size 789 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig96.17302.1
>prot_H-paniculata_contig96.17302.1 ID=prot_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MHVASPALPESALRLLFYRAVATQHTTPSVSGGNSEGGDIASHRGARQSN back to top mRNA from alignment at H-paniculata_contig96:38433..40483+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig96.17302.1 ID=mRNA_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2051bp|location=Sequence derived from alignment at H-paniculata_contig96:38433..40483+ (Halopteris paniculata Hal_grac_a_UBK monoicous)ATGCACGTCGCCAGCCCGGCACTCCCGGAGTCTGCGCTTCGTCTCCTATT
CTACCGCGCCGTTGCGACGCAGCACACCACGCCCTCCGTTTCTGGTGGCA
ATAGTGAAGGGGGTGATATTGCTTCACATCGAGGAGCCAGGCAAAGCAAC
ACCGGTAGTCGTGTACGAAGAGAATCCATGGAGAGATCGAACAGAATAGG
CACGGAAGGGGGGAAAGGGTCGTCGGTAGGGGAGGGCACCAAGAGTGGAG
GCAACGGGGTGGGTGGAGTGAAATCAGTTACACCAGCAGATCTGGCCCGA
GCGGTCGTGGATTTTCCCTTGGCATGTGAAGGACTGGCGTCGCTTATCAA
CGCAACTGCGAGCACACATGGGGTGCGAGAGCTGCTCAAACAGGCAGTAT
TTCGGGCCAAGGAGGCGATCGAAGAGGCAGAGAAG GTGTTTCGTTCTCAC
TTGTTTTCTGAAGTACCCAGTAAGTAATCCGCGATTTGCTGTACCATAAG
CGATGGATCCGTGGCAATTGGGTTTCAGTCACGTCCTCGTGTTGCTGTAC
TTCTTTTATCCCCAACGCACCTCGGCACCTGGAGCCTGGGGACATAAACG
GTTTAACGATAATAAATAACCAACATCCCGTGAGAGACCAGCACTGAAAT
CTGACGCATATTTCCTTCTAGGACTTGTGGTAGCGTGTCCAGTCCTCACA
GCATCATACCCGCAGCGAGAACATGGCATATACGTGGTCACTTGCACAGA
AAGGAAATTTTATCTGCCTGACGCAAAGAACCACTGGGAGAGGGCAAACC
TAGTTCTACATTGATGGAAACTCACTTGTATGTTAGCTCGCTGCACAAGG
CTTTCATAACCACTCGTCATCCTAACCGATCGATCCTTAAACGAAACCTT
TACAAGATTGTTGGAGCGATTAACGACGGTCAAGCAGGCGTTGCTGGACG
CACGAGCAATGGGGGCGGCGACGGTGCGAGGGTTGTACAAAGTGAGGTTG
AGGCGGTTAAGGCGAGGACAAGTCAGCTGAAGGCTTTCATTTCTAACGCA
GGGACATCAAG GTGAGTCTGATGAAGATGGGGCTGTGCACTATGACTATT
ATTTCATTCTAACCAGAAGCCATGTGCTGGGTGCAACCGCGCTTAGCCCT
GAGTTAGCAATATCTATTAGCTGGAGATCTAATTGACGCATCCCGCGGTT
CGGTGTATCGGATCTTCGCGACGTCCATTCAACATCCAATAGGAGTCCGC
TGGATGCCTCGAAATTGTGGATTAGTCGAAGGATGCTGGTGACCGAATCG
GCGTTGCTTCGGACATACGGGGGAATTTTACCTACCATAAAGGCTCAAGA
CGCCATCAGACAGGGCCGAAGAGTACGGTTGAG GTGCGTTCCAAAGCGGA
TTCGTGCTGTCGGTATCGCACCAGCAGTGCGTGCTGGTCATCCTCATCAA
TTCGTCTTAGACATGGTGTTGGGGGGGTGTCATTGTGATTGATTGAAGGG
GGCAAGAGTACTCTGTCGTGGGCTCCCTATCCTACAGGTACAGCATAACA
GATGGCCACTGAGGTGTCTTACGCTACCTTGCCAATAGTATGCCCACTTT
TGACTTTGCGAAGGGGTTGCCAACGTCTTGATACTTTTATGAAGTTCGGC
CCACCCACCACAAACCTCAAAAGTCTTTTACAAACTTTGATAAAATGACC
ACAAGTTTGGACGTGGTGTTTTTTGTCCCAATGTTCCGAAAAGTAGCCCT
CTGGCCAACTGAGATGTTCCAGAAATTGAGTGGAACGTATAAAAACCGTC
CTCTCACTTTCGCTTCCAGGAATAGCGTGACCGCCATCACCTCCTCCTCA
AACTCTTAGTGTACTGCGCCCGAATTCGTTGGGCTGTGACCAACCATCTG
TTATGGCCGCCTGAGAGGCTGCACTTGAAAAGACCTACGGCAATCCTTCG
AAACTGACTCCCTCTCACAGTACAGGTCCAATTGTCGTGGTAGGTGTGCT
TTGCGGAGGTGGCAAGCGGTGTGGCGGAAGAAGACGTTATCTGCACCACC
G back to top Coding sequence (CDS) from alignment at H-paniculata_contig96:38433..40483+
>mRNA_H-paniculata_contig96.17302.1 ID=mRNA_H-paniculata_contig96.17302.1|Name=mRNA_H-paniculata_contig96.17302.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig96:38433..40483+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top