mRNA_H-paniculata_contig96.17301.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: D7FWR4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR4_ECTSI) HSP 1 Score: 411 bits (1056), Expect = 3.580e-129 Identity = 301/677 (44.46%), Postives = 400/677 (59.08%), Query Frame = 1 Query: 16 EEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKKVRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADSVLAKLLPPPAISGEQNAVDGVQTCTPLDPLEALERDLRRLQSAGLWAIVHSNERASSSESEAFASPSSLHDSDGRVSESDETDDGEDGSDQVKKRCSVVVAPTKMS----TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMDDAITSMALGKLKTASPTNRTHKSNCNLFALLMQQGQNATVEADALRREVREAHQNSSLVAVRARKEALQLVQ-ACGRAQGAVFSFLADPTPTMKGIFPGLLQVLGMTTVPEHVSIIRANQP-LGVAGIHYTITSTVRALLAFRREAAMAATTQAAT-------AAPTVGSLSR-RRLEEFLYELELRRSGTVGVARAALRRLVASLLYWMPLP---------VDGGSGRTSTNGGGGVTPRPPAYGKLPRTMAGHETTAFTHNTLCCNNHTLCILPGQNNSGVLAAGNSFMAGVEGDDRERRSHQDSS---SAADNDTARNYGN---PSFSTTEECLWLRLFEAVESHTRPCRTEPQQGPTKPELVPLETAVSAVLTVFG 1959
E R+AA +RAQM+VLM+GF+E++RQVTQHCAERGRLLDRIW SLN+LFEFVL EM TVA CE +L M+ +E+ER + E+RE HK+ELQ+ EEL+NGRWSKKVRQL+++EV+ G VA NE T+ L+ WLPNFE Y DSVLAK+LPP +S V + PL P EALERDL R+ +AGLW + R S SS+ + R S SD + D S++ + S + T ++ TA XXXXXXXXXXX XXXXXXXXXXXXXXXXX + ++ + +L+QQG+ A + A+ALR E +EA + +S V A++ A L+Q ACGRA+G + S LADP PT FPGLL+++GM ++ + V +IR++Q LG+AG H + + AL+A+R P SL R RRL +FLYE ELRRSG VG AR+A+RRLVASLL+W+P P + + T RPP YG LPR++AGHE TA LC+ G+ ++G ++ F E D +H ++ +A+ +++ G FS EECLWLR+F AVESH PCRTEP+QGPT LVPL+ A+++V +FG
Sbjct: 138 EARKAAKIRAQMNVLMVGFFEVIRQVTQHCAERGRLLDRIWRSLNELFEFVLWEMSRTVARCEERLEVMNAVVEQERADRESRETIHKNELQLTEELINGRWSKKVRQLKDQEVRYGSIVAENERTVATLKQWLPNFETYGDSVLAKVLPPLPLSPPTQQQAAVVSAPPLSPQEALERDLNRIHAAGLWCV----RRDXXXXXXXSISDSSMVE---RSSNSDRSAGSGDLSNRGGRGTSPMTVRTPVNGRSGTAESGXXXXXXXXXXXRMSTAIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRTGVAGKRSLADRKMMDVLVQQGREAALRAEALRNETKEAEERASKVKADAKEHARDLLQQACGRAEGVILSLLADPAPTTPWPFPGLLELVGMKSLVDQVGVIRSSQGVLGIAGCHSCVIAAASALVAYRXXXXXXXXXXXXXXXXXXXXTVPAASSLLRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPPPPSLSARARQLAASAEEAGVTAPAQPTSRPPGYGHLPRSVAGHEKTALKQFQ-----SLLCVSNGEGSNGDGSSPGGFGGRGEIDPSAASAHNSNAGDATASPTESSSGDGGGVQDGFSEIEECLWLRVFAAVESHATPCRTEPRQGPTPAHLVPLDKAIASVEKIFG 802
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A6H5JE25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE25_9PHAE) HSP 1 Score: 139 bits (351), Expect = 3.830e-33 Identity = 105/270 (38.89%), Postives = 131/270 (48.52%), Query Frame = 1 Query: 1207 MTTVPEHVSIIRANQP-LGVAGIHYTITSTVRALLAFRREAAMAATTQAATA-------APTVGSLSR-RRLEEFLYELELRRSGTVGVARAALRRLVASLLYWMPLPVDGGSGRT-----STNGGGGVTP-----RPPAYGKLPRTMAGHETTAFTHNTLCCNNHTLCILPGQNNSGVLAAGNSFMAGVEGDDRERRSHQDSSSAADNDTARNYGNPSFSTTEECLWLRLFEAVESHTRPCRTEPQQGPTKPELVPLETAVSAVLTVFG 1959
M ++ + V +IR++Q LG+AG H + + RAL+A+RRE P SL R RRL +FLYE ELRRSG VG AR+A+RRLVASLL+W+P S R S G P RPP YG LPR G F G+ + +A NS G E S G FS EECLWLR+F AVESH PCRTEP+QGPT LVPL+ A+++V +FG
Sbjct: 1 MKSLVDQVGVIRSSQGVLGIAGCHSCVIAAARALVAYRREXXXXXXXXXXXXXXXXXXXVPAASSLLRPRRLGQFLYETELRRSGRVGRARSAVRRLVASLLFWLPXXXXLSSPRARQLAASAEEAGVTVPAQPTFRPPGYGHLPRD--GSSAGGFGGR-------------GEIDPSAASAHNSNAGDATGSPTESGSGDGGG-----------GQDGFSEIEECLWLRVFAAVESHATPCRTEPRQGPTPAHLVPLDKAIASVEEIFG 244
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A835Z723_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z723_9STRA) HSP 1 Score: 146 bits (368), Expect = 1.190e-32 Identity = 84/192 (43.75%), Postives = 115/192 (59.90%), Query Frame = 1 Query: 22 REAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKKVRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADSVLAKLLPPPAISGEQNAVDGVQTCTPLDPLEALERDLRRLQSAGL---WAI 588
+ +VR QM +L+LG EI RQVT HCAERGRLLD+IW SLNDLFE+VL+EM +A + +L +S ALE ER E AR+A H H+L+ +E L+ +WS+ VR L+ R NE L++ WLP+F+ Y +SVL +LL P + A + + AL DL+RL+ AGL W +
Sbjct: 270 KSVVLVRRQMDLLVLGLGEITRQVTFHCAERGRLLDKIWRSLNDLFEYVLREMSTALADSDGRLTDLSEALEAERAERRARDAQHAHDLRTTKEELSHKWSRVVRDLKGAAAGHAARAKQNEALTELVKRWLPSFDVYKESVLVRLLERP-----EGAPQAARRNPHVSAEHALAADLQRLKDAGLLGGWGV 456
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A812Z5I2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812Z5I2_9DINO) HSP 1 Score: 65.5 bits (158), Expect = 3.500e-8 Identity = 46/152 (30.26%), Postives = 76/152 (50.00%), Query Frame = 1 Query: 16 EEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKK----VRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADSVLAKL 459
EE MV+ + VL +G E+VRQV+QHC ERG +L++IW + +LFE L E + + +++ L+R R E+ +A H +L + + L ++ ++ V+QL + + E ++ W P F Y D VL L
Sbjct: 86 EEDLTKMVQELVPVLSIGLNEVVRQVSQHCLERGVVLEKIWRTYVELFEQALGESREALRRQKDKTSKAEAELQRVRDEATELKAKHPAQLDKLRQTLTTKFDQRQNELVQQLTSTRSENRALKVHLEEQLSKQHAWFPMFAIYKDQVLPLL 237
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A812MJD4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812MJD4_9DINO) HSP 1 Score: 62.4 bits (150), Expect = 4.880e-7 Identity = 43/147 (29.25%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 16 EEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKK----VRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADS 444
EE MV+ + VL +G E+VRQV+QHC ERG +L++IW + +LFE L E + + +++ L+R R E+ +A H +L + + L ++ ++ V+QL + + E ++ W P F Y +S
Sbjct: 99 EEDLTKMVQELVPVLSIGLNEVVRQVSQHCLERGVVLEKIWRTYVELFEQALGESREALRRQKDKTSKAEAELQRVRDEATESKAKHPAQLDKLRQTLTTKFDQRQNELVQQLTSTRSENRALKVHLEEQLSKQHAWFPMFAIYKES 245
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A812RL50_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812RL50_9DINO) HSP 1 Score: 62.4 bits (150), Expect = 1.070e-6 Identity = 43/147 (29.25%), Postives = 74/147 (50.34%), Query Frame = 1 Query: 16 EEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKK----VRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADS 444
EE MV+ + VL +G E+VRQV+QHC ERG +L++IW + +LFE L E + + +++ L+R R E+ +A H +L + + L ++ ++ V+QL + + E ++ W P F Y +S
Sbjct: 115 EEDLTKMVQELVPVLSIGLNEVVRQVSQHCLERGVVLEKIWRTYVELFEQALGESREALRRQKDKTAKAEAELQRVRDEATELKAKHPAQLDKLRQTLTTKFDQRQNELVQQLTSTRSENRALKVHLEEQLSKQHAWFPMFAIYKES 261
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A812L5V0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812L5V0_9DINO) HSP 1 Score: 62.0 bits (149), Expect = 1.390e-6 Identity = 43/151 (28.48%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 4 KTKAEEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKEMGDTVASCENQLLTMSRALERERTESEAREAAHKHELQMVEELLNGRWSKK----VRQLREEEVQQGKRVANNEHTMNLLRNWLPNFEWYADS 444
K EE MV+ + VL +G E+VRQV+QHC ERG +L++IW + +LFE L E + + +++ L+R R E+ + H +L+ + + L ++ ++ V+QL + + E ++ W P F Y +S
Sbjct: 77 KELCEEDLTKMVQELVPVLSIGLNEVVRQVSQHCLERGVVLEKIWRTYVELFEQALGESREALRRQKDKTAKAEAELQRVREEAAELKVKHPAQLEKLRQTLTTKFDQRQNELVQQLTSTRSENRALKVHLEEQLSKQHAWFPMFAVYKES 227
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Match: A0A7S1WNL2_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WNL2_ALECA) HSP 1 Score: 53.9 bits (128), Expect = 7.250e-5 Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 1 Query: 55 VLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNDLFEFVLKE 177
+L +G +EIVRQVTQHC ERG +L++IW + DLFE L E
Sbjct: 101 ILSIGLHEIVRQVTQHCLERGVVLEKIWRTYVDLFERALNE 141 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig96.17301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig96.17301.1 >prot_H-paniculata_contig96.17301.1 ID=prot_H-paniculata_contig96.17301.1|Name=mRNA_H-paniculata_contig96.17301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=674bp MKTKAEEREAAMVRAQMSVLMLGFYEIVRQVTQHCAERGRLLDRIWCSLNback to top mRNA from alignment at H-paniculata_contig96:32251..37011+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig96.17301.1 ID=mRNA_H-paniculata_contig96.17301.1|Name=mRNA_H-paniculata_contig96.17301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4761bp|location=Sequence derived from alignment at H-paniculata_contig96:32251..37011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig96:32251..37011+ >mRNA_H-paniculata_contig96.17301.1 ID=mRNA_H-paniculata_contig96.17301.1|Name=mRNA_H-paniculata_contig96.17301.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4044bp|location=Sequence derived from alignment at H-paniculata_contig96:32251..37011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |