mRNA_H-paniculata_contig9592.17298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: D7FJ76_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ76_ECTSI) HSP 1 Score: 112 bits (279), Expect = 8.670e-23 Identity = 84/210 (40.00%), Postives = 110/210 (52.38%), Query Frame = 3 Query: 81 MSHLSSISCLALTLLF---LLSEVPVKSCDIATETGYDFEYIG-DELEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHA---ERGVNLLDLFCVSTPAPADSTTMSPTAVNETGGT 689
MS LSSI AL LL L + SC+ +T +D++ D +V W+ D+ AET++ V S AW SL FS D +MIG+DAV+GLPD S V EYDL S+ + SA DI+ S+ Q TTL FTR +P K AI G+ L+A G +N G+H RG +LDLFC D T++ T GGT
Sbjct: 1 MSSLSSIKASALLLLAAAQLGCGQDLTSCEPSTNGAFDYQVTPTDGFDVHWSV-DTVAETISVEVVSTAVAWTSLGFSSDLMMIGSDAVIGLPDESAVEEYDLISQTTAGVLPSATQDITGGSVSQDASGTTLSFTRPLAPAN--KQAISGTPGDETIFLYAFGGDNELGFHGLAPNRGSLVLDLFC-GDGGDGDGATVAGTPAPTVGGT 206
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A6H5JMX7_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 6.740e-22 Identity = 67/188 (35.64%), Postives = 106/188 (56.38%), Query Frame = 3 Query: 150 KSCDIATETGYDFEYIGDELEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVEYDLDSKNILEITLSADND------ISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAE--RGVNLLDLFCVS---TPAPADSTTMSPTAVNET 680
+C+++ Y+F + + + T D+ +TV+FMV + +E W ++ FS D M+G+DAV+ P++ V E LD+++ E+ L D D +S+ Q TT FTRNT+P K +P G I+L+WA+G++NA+GYH + RG +DLFC TPAP+ + T+SPT T
Sbjct: 29 SNCEVSDLDEYEFMHSPTHGFIIYWTHDT--DTVSFMVEAESEQWTAVGFSPDGDMVGSDAVIYRPEDEEVSEQFLDAQS--EVVLDRDEDDRDTDELSDIEFSQDGDDTTFSFTRNTTPDSSLKQTLPEEPGSQIHLIWALGNDNAFGYHGQSSRGSFQVDLFCPGADGTPAPSAAATVSPTVGGRT 212
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A6H5JKV6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 2.270e-21 Identity = 66/164 (40.24%), Postives = 88/164 (53.66%), Query Frame = 3 Query: 150 KSCDIATETGYDFEYIGDE-LEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVEYDLDSKNILEITLSADND-----ISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAERG-VNLLDLFC 620
C +T+ +D++ I ++ V+WT D+ AE VT V E +V L FS M+ ADAVVGLPD T +EYDL + LS+DN+ IS S+ QAD TTL+FTR SP + K + GE +WA GS N + YH RG + DL C
Sbjct: 25 SECTASTDASFDYQVIAEDGFTVYWTV-DTAAEEVTMQVVYDGEGFVGLGFSSTGAMVPADAVVGLPDEGTALEYDLST-----YALSSDNEHETQEISGASVTQADSTTTLVFTRPLSPADDSKTVLSAEEGEKATFIWAYGSSNTFQYHEARGDFTVSDLLC 182
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A6H5JN46_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN46_9PHAE) HSP 1 Score: 107 bits (266), Expect = 3.320e-21 Identity = 69/177 (38.98%), Postives = 94/177 (53.11%), Query Frame = 3 Query: 147 VKSCDIATETGYDFEYIG-DELEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAE---RGVNLLDLFC---------VSTPAP 638
+ SC+ +T +D++ D EV W+ D+ AET++ V S AW SL FS D M+G+DAV+GLP+ STV EYDL S + + LS+ DI+ S+ Q TTL FTR +P K AI G+ ++A G N +H + RG LDLFC TPAP
Sbjct: 26 LTSCEPSTNGAFDYQVTPTDGFEVHWSV-DTVAETISIEVVSTAVAWTSLGFSSDLSMVGSDAVIGLPEESTVEEYDLTSHALAGVVLSSTQDITGGSVSQDASGTTLSFTRPLAPAN--KQAISGTPGDETIFIYAFGEGNELAFHGQAPNRGDLTLDLFCGEGGDGATVAGTPAP 199
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: D7FJ77_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ77_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 3.450e-18 Identity = 65/184 (35.33%), Postives = 107/184 (58.15%), Query Frame = 3 Query: 153 SCDIATETGYDFEYIGDE-LEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDL-MIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAE---RGVNLLDLFCVSTPAPADSTTMSPTAVNETGGT 689
SCD + GYDFE + ++ E+ WT ++ + + + +++ AW + F DL ++G+D ++GLPDNS+V+EY++ + E+ + DI+ SI QADG+TTL F R SP G K I VAG++ L++ G++N G ++ G+ + DL+C + A + T +PT V GGT
Sbjct: 27 SCDASAVDGYDFEVMPEDGYEIRWTL-NNDTKMIAIQMVTSSVAWAGIGFPSVDLDLVGSDVIIGLPDNSSVLEYEVLGETAEEVVVFEQQDITEASIVQADGSTTLSFIRPLSPGGN-KQNISYVAGDATKLIFGQGADNELGVISDVTWSGMRV-DLYCGTGGIAALARTPAPTVVG--GGT 205
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI) HSP 1 Score: 83.2 bits (204), Expect = 7.520e-14 Identity = 54/123 (43.90%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 315 MIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHA---ERGVNLLDLFC------------VSTPAP 638
MIG+DAV+GLPD STV EYDL S+ + SA DI+ + Q TTL FTR +PT K AI G+ L+A G++N GYH RG +LDLFC V TPAP
Sbjct: 1 MIGSDAVIGLPDESTVEEYDLTSQTTARVFSSATQDITGGLVSQDASGTTLSFTRPLAPTN--KQAISGTPGDETIFLFAFGADNELGYHGLPPNRGSLVLDLFCGDGGDGSDDVTVVGTPAP 121
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A6H5JSH0_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSH0_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 6.240e-10 Identity = 50/145 (34.48%), Postives = 83/145 (57.24%), Query Frame = 3 Query: 267 SATEAWVSLAFSEDDL-MIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAE---RGVNLLDLFCVSTPAPADSTTMSPTAVNETGGT 689
++T AW + F DL ++G+D ++GLPD+ +V+EY++ + E+ + DI+ S+ QADG+TTL F R SP G K I AG++ ++ G++N G ++ G+ + DL+C + A + T +PT V GGT
Sbjct: 3 TSTVAWSGIGFPSTDLDLVGSDVIIGLPDDPSVLEYEVLGETAEEVVVFEQQDITEASVVQADGSTTLSFIRPLSPGGN-KQNISYEAGDTTKFIFGQGADNDLGVISDVTWSGMRV-DLYCGTGGIAALARTPAPTVVG--GGT 143
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A6H5K4J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J1_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 4.560e-9 Identity = 50/150 (33.33%), Postives = 81/150 (54.00%), Query Frame = 3 Query: 156 CDIATETGYDFEYI---GDELEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVEYDLDSKNILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAERG 596
C ++ +G FEY D + WT D+ + +T W+++ +S+ M G+DAV+GLP TV+EYD+ + + SA +IS+ +I QA G TTL F R P+G+GK + +V+ +I+L +A G N + H+ G
Sbjct: 118 CSASSASGAGFEYQVTPEDGFTLSWTV-DTDTQEITVEAVYQGSGWLAIGWSDSGRMPGSDAVIGLPSAETVLEYDMPDYSTP--SASAVQEISDATITQAGGVTTLKFVRPLEPSGDGKQLL-SVSDPAIWL-YAWGGSNNFVLHSVVG 262
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A7S2SLX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLX0_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.540e-8 Identity = 50/155 (32.26%), Postives = 92/155 (59.35%), Query Frame = 3 Query: 180 YDFEY-IGDELEVFWTTPDSQAETVTFMVRSATEAWVSLAFSEDD-LMIGADAVVGLPDNSTVVEYDLDSKNI--LEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAERGVNLLDLF-CVST 629
+DF+ + +L+++WT ++ T+T ++R AWV+L S+ LM+G++ V+GLP++ TV++YDL ++ +E + ++ + Q+ G TT+ F++ +GE +AI GE+ ++ +A GS N+ H RG ++DL CVST
Sbjct: 6 FDFQLSLDSDLDMYWTADNT---TLTALLRYQGTAWVALGVSDSGGLMVGSEVVLGLPNDGTVLKYDLTERSASGVEEAPTVRQTLNGTVLVQSGGVTTMQFSKLLEESGE--IAIDG-RGENTFV-YAYGSGNSLAVHEGRGAVVVDLLTCVST 153
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Match: A0A7S2M544_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M544_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.780e-8 Identity = 53/153 (34.64%), Postives = 84/153 (54.90%), Query Frame = 3 Query: 246 TVTFMVRSATEAWVSLAFSEDDLMIGADAVVGLPDNSTVVE-YDLDSK-----NILEITLSADNDISNYSIEQADGATTLIFTRNTSPTGEGKLAIPTVAGESIYLLWAVGSENAWGYHAERGVNLLDLF----CVSTPAPADSTTMSPTAVN 674
T+T V EAWV++AFSED+ M G+DAV+G P+ V + Y L +K + +EI + + N +IE DG T + FT+ G+ I + G + +LWA GS N YHA+R LDL V++ +P+ +++P++V+
Sbjct: 331 TITMEVIYDGEAWVAVAFSEDENMPGSDAVIGSPELGNVPQKYSLLAKTPVVDSAIEIMPEEEQTLINATIEVRDGQTVMKFTKILKEPGQ----IEIMMGLNN-MLWAYGSSNTLSYHAQRSPFTLDLSSSDEAVNSTSPSFELSVAPSSVS 478 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9592.17298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9592.17298.1 >prot_H-paniculata_contig9592.17298.1 ID=prot_H-paniculata_contig9592.17298.1|Name=mRNA_H-paniculata_contig9592.17298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp MSHLSSISCLALTLLFLLSEVPVKSCDIATETGYDFEYIGDELEVFWTTPback to top mRNA from alignment at H-paniculata_contig9592:1042..8640+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9592.17298.1 ID=mRNA_H-paniculata_contig9592.17298.1|Name=mRNA_H-paniculata_contig9592.17298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7599bp|location=Sequence derived from alignment at H-paniculata_contig9592:1042..8640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9592:1042..8640+ >mRNA_H-paniculata_contig9592.17298.1 ID=mRNA_H-paniculata_contig9592.17298.1|Name=mRNA_H-paniculata_contig9592.17298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig9592:1042..8640+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |