mRNA_H-paniculata_contig9584.17290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig9584.17290.1
Unique Name	mRNA_H-paniculata_contig9584.17290.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LGC7_ECTSI (Related to G-protein coupled receptors n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC7_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 7.280e-65
Identity = 116/217 (53.46%), Postives = 141/217 (64.98%), Query Frame = 1

Query:    4 QQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYM----------------------------CFSVYRAVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
            Q+RF  VMA+CW +PL MA LPF+T+NYG+AGAWCSIT+KDLKSLEWGTFWRF +IYVPL     + AY+                                      + G G   TSTS+ I+ RLRLYPI LVVCWSWATVNR  EAI+PY  ++FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD+++  S   CC    R+  VDR+ LL
Sbjct:   63 QERFWTVMAYCWLIPLGMACLPFTTDNYGEAGAWCSITSKDLKSLEWGTFWRFAVIYVPLVFEAAMVAYVEPGHETQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGVETSTSIPIIERLRLYPIVLVVCWSWATVNRTREAIEPYAESLFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDIKKWSCGDCCWPFRRVRTVDRAGLL 279

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A6H5KTE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE4_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 2.510e-64
Identity = 117/232 (50.43%), Postives = 141/232 (60.78%), Query Frame = 1

Query:   55 MATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKG---------------QGGG---------------------------------------------GQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYG-AVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSST--CC---SRIAAVDRSSLL 552
            MA LP +T+NYGDAGAWCSIT+KDLKSLEWGTFWRF++IYVPLWV +G+N YMC  V+RA++G               Q GG                                             G + TSTS+ I+ RLRLYPI LV+CWSWATVNR+ EAI+PY  + FWL++LQYSFQ+I GFLNL+IFLRTP VMEEWRD++   S   CC    R+  VDRS LL
Sbjct:    1 MACLPITTDNYGDAGAWCSITSKDLKSLEWGTFWRFSVIYVPLWVCVGVNGYMCIKVHRAMRGFEAAMVAYVEPGHEMQAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARTGPGGAETSTSIPIIERLRLYPIVLVICWSWATVNRIREAIEPYAESRFWLFILQYSFQSIQGFLNLMIFLRTPGVMEEWRDDINKWSCGDCCWPFRRVRTVDRSGLL 232

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A835ZGG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGG8_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.910e-32
Identity = 76/207 (36.71%), Postives = 100/207 (48.31%), Query Frame = 1

Query:   22 VMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAV----------------------------KGQGG-------------------------GGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW 483
            +MA CW  PL +A LP +T +YGDAGAWCS+ A        G  WRF  +Y PLW  +  N +M  +  R +                             G GG                         G     S ++A++ RLR+YP+ L VCWSWA+VNRV+E   P    FWLY+LQYSFQT++G LN I++  TP+V EEW
Sbjct:  186 IMAVCWCAPLPLALLPLATRSYGDAGAWCSVVANGAGDTA-GVVWRFAALYAPLWAAVAANLWMHVAASRVLGRLERAAAAAGGSDAESPVSERXXXXXXXGSGGXXXXXXXXXXXXGVCGSMFVSAEHTGLVHGQSRALAVIARLRMYPVVLCVCWSWASVNRVYELAAPDAPQFWLYLLQYSFQTLNGVLNAIVYAVTPSVDEEW 391

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2V1W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.420e-28
Identity = 61/176 (34.66%), Postives = 94/176 (53.41%), Query Frame = 1

Query:    1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEWRDEVRNSSTCCSRI 525
              QR      + W   L++A +P   N YG    WC IT   +   + GT  RF   YVPLW+ +  NA+  +SV R+V+G        TS  +  +V RLR YP  +++ + WAT+NR++ +I+P   VFWL  LQ +F++  G +N + +   PTV E WR E   + + C+ +
Sbjct:    7 SDQRMTPYHIYVWGSALLLALIP--VNYYGQTTGWCWITITSVVDFDPGTALRFFCFYVPLWLAVIFNAFAYYSVTRSVRGMLAAQTEETSDRLLRLVRRLRWYPFIMIIAYFWATINRIYNSINPGQPVFWLIFLQAAFRSAQGLMNSMAYGYNPTVREAWRKECCAAGSTCAAV 180

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S2F7C4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F7C4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.790e-24
Identity = 65/202 (32.18%), Postives = 99/202 (49.01%), Query Frame = 1

Query:    1 KQQRFGAVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMA-------------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVMEEW----RDEVRNSSTC---CSRIAAVDRSS 546
            +Q++    + + W +P + A LPF+T NYG+ GAWCSIT     S   G  W F  I+VP W+ IG N  +  +V R V+G       +     +              V RL+LYP+ LVV W+W T+      ++P   +FWL  + YS  ++ GFLN  +++ TP+V   W    +D+V         C  +  + RSS
Sbjct:  117 EQRKLPTYIIFSWGLPAIFAALPFTTGNYGNNGAWCSIT-PGTGSYWAGVMWIFVCIFVPCWLAIGYNVTVYLTVNRVVRGLHMSHSMSEMDEYSRRTHLKQRANQNQFVERLQLYPLVLVVSWTWVTIYCFQAMLEPDQHIFWLAWIGYSMCSLMGFLNACVYVATPSVWRAWTGGHKDDVIGCGLMTEYCGGLCELQRSS 317

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: D8LJZ4_ECTSI (G-protein coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ4_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.340e-19
Identity = 56/155 (36.13%), Postives = 78/155 (50.32%), Query Frame = 1

Query:   37 WFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTI--GINAYM-CFSVYRAVKGQGGGGQSATSTSMA-------IVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTV 471
            W   L+   LPF+T++YG  G+WC I       ++ GT WR+ ++Y PLW  I   I  Y+  FSV R    +  GG SA   S            RL  YP  L+  W++AT+NR+  AIDP   VF L++L  S     GF N +++  T  V
Sbjct:  128 WGSALLSTLLPFTTDSYGSTGSWCWIETNPGSDVDVGTMWRYLVLYCPLWAAIVFNIKVYVRIFSVVRRFSTEIAGGASAVGPSAEQQTRMTKFSKRLVWYPAVLIASWTFATINRIQNAIDPDHPVFGLFLLHTSLVAFQGFFNALVYGSTDAV 282

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A2R6WMW1_MARPO (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WMW1_MARPO)

HSP 1 Score: 86.3 bits (212), Expect = 8.400e-15
Identity = 50/158 (31.65%), Postives = 73/158 (46.20%), Query Frame = 1

Query:    7 QRFG-AVMAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYR--------AVKGQGGGGQSATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            + FG A  A+ W    +M  +P   ++YG AGAWC +  +       G   RF   YVPLW  I  N  + F V R        AV       Q      M  +NR   YP+ L+  W++ T+NR+ + ++P   +FWLY L  S  ++ G  N I +
Sbjct:  110 EEFGPAFHAYVWGTAFLMTIIPSIGDDYGPAGAWCWVRTETTA----GKVLRFMTFYVPLWGAILFNGAVYFQVIRMLKYATRMAVSMADRQRQVEARPEMKAMNRWGYYPLILIASWTFGTINRIHDFVEPQNKLFWLYCLHISTASLMGLFNSIAY 263

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: L1K590_GUITC (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1K590_GUITC)

HSP 1 Score: 82.4 bits (202), Expect = 1.940e-14
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 1

Query:   10 RFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            R+ A+    W +P  +  LP  + +YG + GA W   TA  L         RF   Y+PLW+ IG N +   ++   ++G     Q  S  +T + +  RL LYP+ L++CW + T+NR++ ++ P   +F LY L   F ++ GF N +++
Sbjct:    4 RYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 143

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S1C6G2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6G2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.720e-14
Identity = 42/122 (34.43%), Postives = 60/122 (49.18%), Query Frame = 1

Query:   79 NNYGDAGAWCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMAIVNRLR----LYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHG 432
             +YG AG+ C I A        G  WRF   Y+PLWV +G N ++ ++  R ++        A   +   + + R    LYP+ L+VCW WATVNR+   + P    FWLY L  +F    G
Sbjct:    1 RSYGAAGSLCWIDASST-----GALWRFVTFYLPLWVCMGYNVWVYWTTMRRIR-------MAVLRAGGRIGKARQPLLLYPLILLVCWFWATVNRLQNLVAPEEPQFWLYALGLAFAACQG 110

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BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Match: A0A7S4L1A2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4L1A2_GUITH)

HSP 1 Score: 83.2 bits (204), Expect = 8.730e-14
Identity = 47/154 (30.52%), Postives = 80/154 (51.95%), Query Frame = 1

Query:    4 QQRFGAVMAWCWFVPLMMATLPFSTNNYG-DAGA-WCSITAKDLKSLEWGTFWRFTIIYVPLWVTIGINAYMCFSVYRAVKGQGGGGQ--SATSTSMAIVNRLRLYPIALVVCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIF 453
            + R+ A+    W +P  +  LP  + +YG + GA W   TA  L         RF   Y+PLW+ IG N +   ++   ++G     Q  S  +T + +  RL LYP+ L++CW + T+NR++ ++ P   +F LY L   F ++ GF N +++
Sbjct:  119 EMRYHAI---AWGIPFFLFLLPLFSKSYGYEYGACWILSTAPVL---------RFVQFYIPLWIVIGYNVWNISTLIFHLRGLVLSTQDDSQANTDLQVFWRLALYPVILIICWFFGTINRIYNSLHPDEPIFALYFLHKFFGSMQGFFNFLVY 260

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig9584.17290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D8LGC7_ECTSI	7.280e-65	53.46	Related to G-protein coupled receptors n=1 Tax=Ect...	[more]
A0A6H5KTE4_9PHAE	2.510e-64	50.43	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835ZGG8_9STRA	2.910e-32	36.71	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2V1W1_9STRA	8.420e-28	34.66	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2F7C4_9STRA	8.790e-24	32.18	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
D8LJZ4_ECTSI	1.340e-19	36.13	G-protein coupled receptor n=1 Tax=Ectocarpus sili...	[more]
A0A2R6WMW1_MARPO	8.400e-15	31.65	G_PROTEIN_RECEP_F2_4 domain-containing protein n=2...	[more]
L1K590_GUITC	1.940e-14	30.92	G_PROTEIN_RECEP_F2_4 domain-containing protein n=2...	[more]
A0A7S1C6G2_9STRA	7.720e-14	34.43	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A7S4L1A2_GUITH	8.730e-14	30.52	Hypothetical protein n=1 Tax=Guillardia theta TaxI...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	102.8
Seed ortholog evalue	1.7e-19
Seed eggNOG ortholog	2880.D8LJZ4
Preferred name	GCR1
KEGG ko	ko:K08467
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000278,GO:0001101,GO:0003006,GO:0003674,GO:0004888,GO:0004930,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006082,GO:0006109,GO:0006520,GO:0006558,GO:0006570,GO:0006571,GO:0006725,GO:0006807,GO:0007049,GO:0007154,GO:0007165,GO:0007186,GO:0007202,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009314,GO:0009416,GO:0009628,GO:0009637,GO:0009642,GO:0009645,GO:0009719,GO:0009725,GO:0009735,GO:0009737,GO:0009738,GO:0009741,GO:0009742,GO:0009755,GO:0009785,GO:0009787,GO:0009788,GO:0009791,GO:0009845,GO:0009889,GO:0009908,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010162,GO:0010231,GO:0010244,GO:0010431,GO:0010517,GO:0010518,GO:0010646,GO:0010647,GO:0010648,GO:0010675,GO:0010863,GO:0010919,GO:0012505,GO:0014070,GO:0016020,GO:0016021,GO:0016053,GO:0017144,GO:0019220,GO:0019222,GO:0019438,GO:0019752,GO:0021700,GO:0022414,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030522,GO:0031090,GO:0031224,GO:0031226,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032960,GO:0033993,GO:0038023,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043401,GO:0043436,GO:0044093,GO:0044214,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046394,GO:0048316,GO:0048367,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060191,GO:0060193,GO:0061458,GO:0062012,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071695,GO:0071704,GO:0071944,GO:0080090,GO:0089717,GO:0090351,GO:0090567,GO:0097305,GO:0097306,GO:0097437,GO:0098588,GO:0098805,GO:0104004,GO:1900274,GO:1901360,GO:1901362,GO:1901419,GO:1901420,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901700,GO:1901701,GO:1902221,GO:1902223,GO:1902930,GO:1905957,GO:1905958
EggNOG free text desc.	G-protein coupled receptor
EggNOG OGs	28MT7@1,2QUBH@2759
Ec32 ortholog description	Related to G-protein coupled receptors
Ec32 ortholog	Ec-06_002590.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04030
Exons	3
Model size	1825
Cds size	555
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig9584.17290.1	prot_H-paniculata_contig9584.17290.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig9584 6459..8809 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931189.0594208-UTR-H-paniculata_contig9584:5212..6458	1622931189.0594208-UTR-H-paniculata_contig9584:5212..6458	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9584 5213..6458 -
1691481630.702643-UTR-H-paniculata_contig9584:5212..6458	1691481630.702643-UTR-H-paniculata_contig9584:5212..6458	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9584 5213..6458 -
1622931189.121187-UTR-H-paniculata_contig9584:8809..8833	1622931189.121187-UTR-H-paniculata_contig9584:8809..8833	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9584 8810..8833 -
1691481630.7508776-UTR-H-paniculata_contig9584:8809..8833	1691481630.7508776-UTR-H-paniculata_contig9584:8809..8833	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig9584 8810..8833 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931189.077958-CDS-H-paniculata_contig9584:6458..6617	1622931189.077958-CDS-H-paniculata_contig9584:6458..6617	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 6459..6617 -
1691481630.7158763-CDS-H-paniculata_contig9584:6458..6617	1691481630.7158763-CDS-H-paniculata_contig9584:6458..6617	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 6459..6617 -
1622931189.0929642-CDS-H-paniculata_contig9584:8284..8463	1622931189.0929642-CDS-H-paniculata_contig9584:8284..8463	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 8285..8463 -
1691481630.7286553-CDS-H-paniculata_contig9584:8284..8463	1691481630.7286553-CDS-H-paniculata_contig9584:8284..8463	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 8285..8463 -
1622931189.107323-CDS-H-paniculata_contig9584:8592..8809	1622931189.107323-CDS-H-paniculata_contig9584:8592..8809	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 8593..8809 -
1691481630.7392373-CDS-H-paniculata_contig9584:8592..8809	1691481630.7392373-CDS-H-paniculata_contig9584:8592..8809	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig9584 8593..8809 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig9584:5213..8833-
coding sequence from alignment at H-paniculata_contig9584:5213..8833-

protein sequence of mRNA_H-paniculata_contig9584.17290.1

>prot_H-paniculata_contig9584.17290.1 ID=prot_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MAWCWFVPLMMATLPFSTNNYGDAGAWCSITAKDLKSLEWGTFWRFTIIY
VPLWVTIGINAYMCFSVYRAVKGQGGGGQSATSTSMAIVNRLRLYPIALV
VCWSWATVNRVFEAIDPYGAVFWLYVLQYSFQTIHGFLNLIIFLRTPTVM
EEWRDEVRNSSTCCSRIAAVDRSSLLRNIVIAGK*

mRNA from alignment at H-paniculata_contig9584:5213..8833-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3621bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAACAGAGATTCGGGGCGGTGATGGCGTGGTGCTGGTTCGTACCCTT
GATGATGGCCACGCTTCCCTTCTCTACCAACAACTACGGCGACGCGGGGG
CCTGGTGCTCCATCACTGCGAAGGACCTCAAGTCCCTAGAGTGGGGCACG
TTTTGGCGGTTCACCATCATCTACGTGCCTCTTTGGGTGACCATCGGCAT
CAACGCGTACATGTGCTTTTCCGTGTACCGCGCAGTCAAGGGTTTCGAGG
CGGCCGCCATGCTTGCCTACGAGGAGGCACCAGATGAGGCGACGCCCACC
CCTTCCCCTTCCAGAGCGGAATCAGGAAGGGAAGAGGGCGCGGCGCGAGA
GGGCGGCGGCGGGGGCGGAGGGCAGGGGGGAGGGGGACAGTCGGCGACGT
CAACTTCGATGGCGATCGTTAACCGCTTGCGGTTGTATCCGATCGCGTTG
GTGGTGTGTTGGAGCTGGGCGACCGTGAATCGGGTGTTTGAGGCGATTGA
TCCTTACGGGGCCGTGTTCTGGCTGTACGTGCTCCAGTACTCGTTCCAGG
TGAGAGTTTTCTTTTTCATTTTTTTCTTTTGGCTCTTTTCTTTTAAGGAG
CCGCGGTCTCTCTGAGGTCTCGCAGAATATATATAGATATAAAACATGAG
GTAAGAACAGCATAAGTGAAAACGCGCGTGGAAGTGTGAAAGATTTGAAT
GACCAGCTGAAAAGGGCACTGCGGCGTTAGCTTCCAACGCCGCAGGAGCT
AAAACGCTTTATGTATACGCATATATTTTATCATGTATGGTCTGTCCTGC
CCGTGCGTCCATAATATATGTTTTTGGAAAAAACACGAGAAAGTGCTGCA
AGTAGTTAAGTGCGGTGCGTCATTTTTCAGTGGCCCGAGTGGCTGAGCGG
CGGGTCGAAAGCAGCCACCATGTGGAAGCTTTGGCAATCATGTTGCCGAA
TTTGTGTGTACCGCAGTCGGTGTGAGACATGGTCAGTTTTCCCTGTTCGC
CCCCCCCCCCCCGCTGCTGATCTTCCCGAGTTTTCCGAGTCGTGGAATCG
GTTAATCAGACCTCTTAGTCATCGAGACATCTTCTAAAACTTTGTTTGCA
GGTTTTTTCGGGCAAAAATGCCTCCCCAAGAAAAAACTCTGTGTACATTA
TCCTGGAGTTTTTTGCTGCGGAAATCAACCTCCTTTCCGCTAGGCTGCTC
TAACCCTTCGCCTGTTTGTTTTCAGGGCAGAAGTTCTCAATCTCTCATAT
CTAATGTGCAGGGTTTGCTACGTACATGCGGAGGGTCCCATCAAGATGAC
CGCACACGTTCCACGTCGCCGCGGACATAACCAAGCTAGATATACGATGC
CGAGGTGATAGCCGTGCAGCGGCAACCGGAGTCCCCATCGCTGGCCAGCG
ATGGTGGCCTTCAGTTGCTGCTGCAAGGCTGTCCCATGTTGCCGCCGTTG
CGGCAGCAATGGCAACCTTCAGCTACTTCTGCGAGACTGTTCCATCCTGC
CTCCGATGTGATGGATGACGATGCCCACGATGATAACCCATACTGCCCAC
GCGGCGAAGCACGTGTTGCGCTCGAAGCGGCCAATTTTAGCATGTTTGCA
GTGTTTGATCTGGAGAATGACAAACCTAAGTCAAAACTCACCCGTAACAG
TATAGAACAATAGGTTTGCCCTGCCACCTCGTGGTGGAATATTCAACTTG
CTCTTGGCATTTGTGAAAATATTTACTCCACCGATAAATTCAACACTGGT
AGTAATTTTTCTCCGTGCTTCGCCCATAATAAGCACATATATATATAATT
GCATTTTTTATTTCCCTCAAGTTAAAGTGACGTCCGAAAAAAAAACGTGT
CAGAAAAAAATGCCCCCAATAGGAAGCGGTTTCAACAGTATGAAAGGAGT
TGACCCACAGTGTCTTCAACCTCCATTGGTGGTCATGGTATTTTCTGTGT
GTACTTGCACGTGTTCGTAGGGAACCCATCTATGGATTTGAAAATTGCCG
ATGAGAACATGGCCTCGAAGAATGATGGACTTCATAAACTCAGTACAAAA
AACACATATATAATGTTATAAAACTAGTCATGAGATTTTTGAGGCTTATG
ATAGCCTTGATGTACTTTGCTGATAAGAGTGAAAAATGCCCCCCCCCCCC
TCTACCCCGCGTCTGTGTTCCCCCCGGCCGCTGCCGCGCGGGTCCCCATG
CAATACCTTCTCGCAGACCATTCATGGCTTCTTGAACTTGATCATATTCT
TGCGGACGCCAACGGTGATGGAAGAGTGGCGGGACGAAGTACGCAATTCG
TCAACCTGCTGTTCTAGAATCGCGGCTGTAGATCGATCGTCGTTATTGCG
CAACATAGTCATAGCGGGCAAGTAGGTCGTGAGTAGTGTTCGTTGTCCAT
CATTTTTTTTTGTGTCGTAAAAAAGTAGGTGCTATTCTCTGTTTTTCTTG
TGGGTTGACGTGTATTCTCGTGAAATCGACGGGTGGCGGGTGGCGGGTGG
TGCGTAGCAGGTGGCAGGTGACTGCTATGGACACTATCATTCTGTGTGTG
GGGTATTTGGGGCTGAGATAGTCAATTGAGCCGGAATTTGCATGCAATGG
AAGCAGTAGTTAGTGGTTATTGTACAACGAAGTGGGTTTTGTTGGTTTGT
TTTTGTCATCACATAATATAGGCCTTGGCGATGTGCATACTGGTGGCCTA
CCAACAATTTTAGACTGGAGTATTACTTTCCCGAAGAGTTCCAATTGCCA
AGGTACTATTCTCTGAAAAGTTTTGATTATGACCATGGGTGGGGGTGTTC
CTGTTCCCGTTCGTTTTTAAGTTCGACGATGATCATGATGAATGTTTACA
TCTGAAGCCGATGGATAATCAATATAAGCCGAGTAGGCTACCTGGGAAAC
CCGACTCCCCGTCCCACTTCGAGTGAAAACGGTGCAAGCAACTTGGGCAA
GCAACTTGGAAAGTTCCCAGAACATCGACGCAGGGAACAACAACTGTACC
GAAGGGTCTCCTATCCCGTTCCCGATTTCCAATCATGTGGGAAAGAAGCC
ATGTAGTAGCGAAGCGCATACACCATGCCCCTAGTTTGGTCAGTTTGAGG
ATAAGTAAGCAAACTGCCGAAAAATGACGGTTAGCATACCCCGATATTGT
CTCGCGATTATTGTCATGACTTGTACAGTACGGTGTTTGCATCTCTGCTT
GTACTTTTGGCTCACTCTTTACTCTTCAGGACGTCTAAACCATGGCAATT
GATGCGCATGTGTGGTGATGTCGTTAAGTATTTGCTAGTGGTAGAGTTCG
TGCTTCTTCGTGAAGCGTAACACTGATCACGTAAAAATATAGTGGTTTTT
TATCAGTCTTGAACATGCTACGTGGTGACGTCGCTATCTAGTAGGTGAAG
TTCTTAACAGGCGATACTTGGGATTGGGGATCAACTTCCTCATTGGGATT
GAAGTCTCGTTGAATTGAATGGAATACTTCGAGAACGGTGTTAGCGAAAG
GTACTTTCCGGGGAGATTTTGTGTCCATCTCACAGTTAATTACTCTGCAC
AATGAATTTGGAAACCTTTTCATACCTCGATTCGCACCGGAATAGCCTTT
CGATTGGCACCATTTTAGAAG

Coding sequence (CDS) from alignment at H-paniculata_contig9584:5213..8833-

>mRNA_H-paniculata_contig9584.17290.1 ID=mRNA_H-paniculata_contig9584.17290.1|Name=mRNA_H-paniculata_contig9584.17290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig9584:5213..8833- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTGGTGCTGGTTCGTACCCTTGATGATGGCCACGCTTCCCTTCTC
TACCAACAACTACGGCGACGCGGGGGCCTGGTGCTCCATCACTGCGAAGG
ACCTCAAGTCCCTAGAGTGGGGCACGTTTTGGCGGTTCACCATCATCTAC
GTGCCTCTTTGGGTGACCATCGGCATCAACGCGTACATGTGCTTTTCCGT
GTACCGCGCAGTCAAGGATGGCGTGGTGCTGGTTCGTACCCTTGATGATG
GCCACGCTTCCCTTCTCTACCAACAACTACGGCGACGCGGGGGCCTGGTG
CTCCATCACTGCGAAGGACCTCAAGTCCCTAGAGTGGGGCACGTTTTGGC
GGTTCACCATCATCTACGTGCCTCTTTGGGTGACCATCGGCATCAACGCG
TACATGTGCTTTTCCGTGTACCGCGCAGTCAAGGGGCAGGGGGGAGGGGG
ACAGTCGGCGACGTCAACTTCGATGGCGATCGTTAACCGCTTGCGGTTGT
ATCCGATCGCGTTGGTGGTGTGTTGGAGCTGGGCGACCGTGAATCGGGTG
TTTGAGGCGATTGATCCTTACGGGGCCGTGTTCTGGCTGTACGTGCTCCA
GTACTCGTTCCAGGGCAGGGGGGAGGGGGACAGTCGGCGACGTCAACTTC
GATGGCGATCGTTAACCGCTTGCGGTTGTATCCGATCGCGTTGGTGGTGT
GTTGGAGCTGGGCGACCGTGAATCGGGTGTTTGAGGCGATTGATCCTTAC
GGGGCCGTGTTCTGGCTGTACGTGCTCCAGTACTCGTTCCAGACCATTCA
TGGCTTCTTGAACTTGATCATATTCTTGCGGACGCCAACGGTGATGGAAG
AGTGGCGGGACGAAGTACGCAATTCGTCAACCTGCTGTTCTAGAATCGCG
GCTGTAGATCGATCGTCGTTATTGCGCAACATAGTCATAGCGGGCAAGTA
GACCATTCATGGCTTCTTGAACTTGATCATATTCTTGCGGACGCCAACGG
TGATGGAAGAGTGGCGGGACGAAGTACGCAATTCGTCAACCTGCTGTTCT
AGAATCGCGGCTGTAGATCGATCGTCGTTATTGCGCAACATAGTCATAGC
GGGCAAGTAG