Homology
BLAST of mRNA_H-paniculata_contig9581.17288.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.910e-11 Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 Query: 1186 ASSSSPRNPLTDHVDVLDHILHFAAGEGYLFVAGVSKQWKRAWA-DRPKCTHLSIAVGSPSNLAWARDSGCRWDEVTCSLAAA 1431
+S S+P NPL D +L H++ FAA G+LFVAGVS+ W+ AW +RP T + AV SPS L WAR SG W C+ AA+
Sbjct: 719 SSPSAPVNPLADPT-ILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAAS 800
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 98.2 |
| Seed ortholog evalue | 2.7e-18 |
| Seed eggNOG ortholog | 2880.D7FMP0 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AMK4@1,2RZCC@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 3109 |
| Cds size | 348 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9581.17288.1 >prot_H-paniculata_contig9581.17288.1 ID=prot_H-paniculata_contig9581.17288.1|Name=mRNA_H-paniculata_contig9581.17288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MGSDYEMGEIFYVSGTDASSSSPRNPLTDHVDVLDHILHFAAGEGYLFVA
GVSKQWKRAWADRPKCTHLSIAVGSPSNLAWARDSGCRWDEVTCSLAAAS
GRSKTLRYAHSKGCL* back to topmRNA from alignment at H-paniculata_contig9581:4871..9263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9581.17288.1 ID=mRNA_H-paniculata_contig9581.17288.1|Name=mRNA_H-paniculata_contig9581.17288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4393bp|location=Sequence derived from alignment at H-paniculata_contig9581:4871..9263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGGAGACATATCACACCAGGTAAGAGCGGATGAAATGATGCCGGAT
GTACAGGATGACAGGGAACCTGTGTTGTGAGCGCTAGCTTTGTCGGCAAC
AGCCATGGGGTAGCCAGGGACAAAGGGCGATGTTTTGAGTGCTGCTTTTA
TTTGCTGGTGCTCAGTCTATTTCCGCCCCTGGTTATCATACGTGTTGACA
GTTGACAGGCGTCTTCCTCGCATCGGGTGTTGCTGCCATCCGCTTGTATT
GGCAGACTCTCGAGCCCAGCAGAGGATGTGTTGACGACAAAGAAGTGCTG
TCCTATTTTTTCCTACCTCAAGATCGTTTCTTTCGAGGTGTCTTACTTTA
TACAGGAATTAGTGTGGGCCCACAATTTGAACCCCATTTATTAGGCTGGG
TTCCTAATGCGATTGCAAAAGGTGAGCCTCCATTTTGTATTAGGTAATTT
CTTGCTAGCGGGCTTATACTATGTTTTGCCCTATTTACTCAGAATCCACG
ACCCGCGCAAAACGGCTTGCCACGCTCGCATGCAGGTACAGTGTCAGTGA
AATTCGGCCTCCAGCAACTGATGAGTACAGATTTGAAAGGCTTTTCCGCA
ACGACTGATATCACCAACACCGCGCACTATGTGAACAAGAGAGGTTCCCT
CCAGTCCTTGACGATGAAACCTCTCCTGTTGCTACGCTTGAAGCGCACAG
ACACCTGAATGCGGATCTTGACGCTCGGGCCATTATCAAACCAGGGAAGG
CTGCTTAACGTCGTTGTTGCGCCGATAGCGTAAATGTGCTGCTGTTTTGC
TGATATGAGGGACACCGCCAACCAGGACAAAACCTAAATTGCTGCCCCCA
GCAACCAAACTCCTAGTAGCTCTATAGTAATATGTACAGCCTAGTTAACC
ACTCAGGCAACAGTCGGTGTCGCCTCAGTGGCTCAGTAATTTATATATTG
AGCAACCAGCCTTTTCAGCTGACAGCCACAGCTGATCACGAGTAGTTGCC
TCAGCGACTCAGTTGTGCATCTTGTGTGTTTACTCGTATCCGAAACCCTG
ACCTTCCCCAATTGCAATCCGCTCAATCCTCTATCTTCTTTATAACCAGA
CCAACCGACAGATATAAGCGATACCCACAACAAGATGGGTAGTGACTATG
AAATGGGGGAAATCTTTTACGTATCTGGGACCGATGCCTCGTCGTCATCG
CCTCGCAATCCGCTTACCGATCACGTCGACGTCCTCGACCATATCCTACA
TTTTGCTGCCGGAGAGGGCTATCTATTTGTGGCCGGGGTGTCTAAGCAAT
GGAAAAGGGCGTGGGCAGATCGCCCGAAGTGCACCCACCTCTCTATCGCC
GTGGGGTCGCCATCAAACCTAGCGTGGGCGAGAGACAGCGGCTGTCGTTG
GGACGAGGTGACATGCAGCCTAGCGGCGGCGAGCGGCCGCAGCAAGACCC
TTCGATACGCGCATAGTAAAGGGTGTCTCTGAGACGAGTCCACGTGCGCG
AGAGCGGCGGGAGGGGGTCACCTCGACTTACTGCGGTGGTGTAGGGATGA
GGCTGACTGTCCTTGGTCGGGGTTCTCAACATACTCGGCCGCCGCCGCGG
GGGGGCAGCTCCGGGTGTTGCAGTGGCTGTGGGATAACGAAGGTCCATGG
GACGACGAGAGCTGTAAGGAGGCATGTGCCGGGGCCGCCAAGGGGGGGCA
TCTTGACGTGCTGCAATGGTGCAAAGTTAAGGGTTTCGCTTGGGATGTGT
CAACACCCACTGGTGCCGCCAACCGTGGTCATCTTGAGGTGAGTTACTCA
ATGATCGAAGGCGGTGGCGGGGAGAGGAAGGGAGGGGGTGGGTAGCGTAT
ACCTTTTGGGCCAGGCACGGCGTGGGTCACTGCCTTCACAAGGGGCTATT
AGTGTATCACTCGCATGTGCACTGTAGGCGAGCATGGAATAGGTTTCGCT
TGAACGCATGGGAGAAACAAAATACCCCGATTACCCGCCACAAGCTTCAT
TCACAAGTCAATCCACCTACCACAGTTGGTAAACCCATTACGCCCGTATA
TTAACTCCATATTACCCATGTCAAGGTAATATAGCTGACCTCAAATGTTA
GTTGTGTAGACTTATCAGAAAATATAGATCAAGTGAGGGGTAGTATCGTC
CGCGATTTGAACACGATTCCGAAGAAATTTTCGCGTCTCAGCCTTAAAGC
GTGGATGTAAAACTTTCCCCTCGAGAAAAGCGTAAAGAAGCGATCAGGTT
GTCTGAAATGTTGAAGGTGCCAGTTACTTAAGAAAGAGAAACGCATGGAG
CCCAAAATTTCAACCCGCCTGAGGGACACGATACTCAACAATGTAGCTGT
TAGTACTCGGCAAATCGATGTCACCAGAAGGTGAGAGTACCTCACAGTCC
GTCAGGGGGATACTGGAGCATCATCTCCGTTTGATGCGTTCCATTGTGGG
ACCCTTCTACTGGTGTTCTTGTCGTGCGTCTTCCTCCATCGTGGAAATGT
CTTGTTTCGATACCAAACCAGGGTTTCCCGTGATGGTTCTTGGACAAGAA
GTCGTATAGCATGCCCTGCAGCCCCTACACCATCTCAACTTGATTTAGGG
TAGAGAAAATTGTAGATGCATGTAGCTAAATAAGCACTGAGTTTATAGGC
ATGCTGGGGTATCCCCGACCCACCCCCCCTAATGGCATCCTGGGTGAGGA
AAGTGGATGTTACAACGAGGGATACGGGGTATATAACCCCCCGTGATAAT
TTGGGCGACCAGCTATTTTACCAACGCCCGGTGATAAGACTAGTACAGCC
GTAAACCTTGACGCCTACCGCTGAATGCTGGAGTAGCAAATGTACAAAGA
AGAACATGTACCATCGTCATACTCTCTAGGTCGATGGCATCGTTGAGTAT
ACCACTATCCCCCAGAATACCGTCCTCCGTTGGTGGGCGTTTTGAGAACG
AAAAACGTTCATCACAAGGGCTCTTACAACCCACAAACTAAGTTACACCA
CGGCTCGAAGGATGATGTTGGTGTTGGTACGAAATAGCTTAAAGTATCGG
TCTTGTATATTTGTCCGCCCAGGTACTGCAGTGGTGCAGAGCCAATGACT
GTCCCTGGAGTGAATTGACGTGCAGCGCCGCTGCCGGGGGAGGGCAGTTG
GAGGTACTACAATGGTGCAGGGCAAACGGTTGCCCTTGGAACTCATGGAC
GTGTGCGGAGGCCGCCGAAAATGGACACCTTGAGGTGCTGCGGTGGAGCA
GGGCTAATGGCGCCGCCTGGGACGGGTTGACATGCGCTTATGCCGCGAGG
GGAGGGCATTTGAAAGTTCTCCAGTGGGCAAGAGCCAACGGGGCCGCTTG
GGGAGTACAAACGTGCGCTAGAGCAGCAGAGGGCGGAAAGCTTGACATTC
TGAGATGGTGTAGGGCATACGGTTGTCCGTGGGACAGTAGTACGTGCAGG
AATGCGCGAAGGTTCGGGCGCTGGGACGTGCTGGAGTGGGCCGTGGCAAA
CGGTTGCCCTGACGAACCTCCGCACTAGCGTGATGGACGGAGTACAGACG
GTTGTACGGCGAACATCATCCGGTGCAACAGCAAAATTGTTTTCCCACAT
ATGGTTAAAGAAATGGCGGCATAATGGGGGGGGGCAGTGACCACAGCAAG
TAAATTCTCGTACTATTTACTATTTCATTTGATAATTTGGCCGTGGGACT
GTTAGTCTCACAAGCGAGATACCTCTCAGAGATATGTAGCTTATTATGCG
AGAGAGACATGGAAACGCTACACCGACGGAGAAACGGCCACCGGACTCAA
GATATCTATTATGCGCACGAGTGACTATGCAACGAACAGCTGTGTTCACC
CTTCAGATGTCAAAGCAACTGGCTAATGAAAGCACTACTATTAATACTGC
TTCCATTGAGCTCTACATGGTAGCGTTGCACCCAGTATATTGCTGTCCGC
GAAGATTGGGTCGCCTGTGCATGAGCCTCTAATGAATTCGTTTATTGACT
GAGGGTCAAAGCTACATTATAGCTAGAACACTACAATACTCTATTGCGTA
CCGTGGAGAAGATGATGACATTGTATAACATGAACGCGTTGTCATTCGCT
TGTTGATTTGGTATAATAGGTGACGTTATTCCACCGAGAGGGTCTCATTT
ATATTCTCCGCATTTTAGCCCAAACACAAACAGAATTTCTGATTTGGCAG
CTTCTTCATGGCTAATAAAAGGACACTCAACGGTTTGTTCAGTAAGGTAT
ATACCCTATATCCAGGTATTCTGAAAAGGTGTACTAAAAATACCAAAGTC
TCGAGGAAGGTATTGAGCGGCGTACTAAAGTGATATCCTATACCCGGGTA
TGCTTTAGTACCTTGTTGAGGGCTTCCATGAGCACATATCGTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig9581:4871..9263+ >mRNA_H-paniculata_contig9581.17288.1 ID=mRNA_H-paniculata_contig9581.17288.1|Name=mRNA_H-paniculata_contig9581.17288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig9581:4871..9263+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTAGTGACTATGAAATGGGGGAAATCTTTTACGTATCTGGGACCGA
TGCCTCGTCGTCATCGCCTCGCAATCCGCTTACCGATCACGTCGACGTCC
TCGACCATATCCTACATTTTGCTGCCGGAGAGGGCTATCTATTTGTGGCC
GGGGTGTCTAAGCAATGGAAAAGGGCGTGGGCAGATCGCCCGAAGTGCAC
CCACCTCTCTATCGCCGTGGGGTCGCCATCAAACCTAGCGTGGGCGAGAG
ACAGCGGCTGTCGTTGGGACGAGGTGACATGCAGCCTAGCGGCGGCGAGC
GGCCGCAGCAAGACCCTTCGATACGCGCATAGTAAAGGGTGTCTCTGAAT
GGGTAGTGACTATGAAATGGGGGAAATCTTTTACGTATCTGGGACCGATG
CCTCGTCGTCATCGCCTCGCAATCCGCTTACCGATCACGTCGACGTCCTC
GACCATATCCTACATTTTGCTGCCGGAGAGGGCTATCTATTTGTGGCCGG
GGTGTCTAAGCAATGGAAAAGGGCGTGGGCAGATCGCCCGAAGTGCACCC
ACCTCTCTATCGCCGTGGGGTCGCCATCAAACCTAGCGTGGGCGAGAGAC
AGCGGCTGTCGTTGGGACGAGGTGACATGCAGCCTAGCGGCGGCGAGCGG
CCGCAGCAAGACCCTTCGATACGCGCATAGTAAAGGGTGTCTCTGA back to top
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