mRNA_H-paniculata_contig9576.17285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A6H5JBC4_9PHAE (Casein kinase II subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC4_9PHAE) HSP 1 Score: 366 bits (939), Expect = 4.630e-118 Identity = 165/208 (79.33%), Postives = 189/208 (90.87%), Query Frame = 2 Query: 140 MSESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEASSELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQRVDGAYFGTTFPHLFFMTYGSMIPDPPEQRFVPRVFGFRVHSSAADGAFARGQQANQQ 763
MS+SSSS+G+D+WIQWFCGL+GHEMFCE++RGYIED FNLYGLRH+VP INDSLD+ILDR EAS ELMEAT +LYGLIHARYVLT +GLEAMYAKYTLQEFGNCPHFLC+ Q VVPLGVRDEPH+ETVKLYCPKCQ++YVHPSHAAQRVDGAYFGTTFPHLFFMTYG+++PDP ++ FVPRVFGFRVHS+A +GA A G +Q+
Sbjct: 1 MSDSSSSDGEDTWIQWFCGLEGHEMFCEIDRGYIEDAFNLYGLRHFVPRINDSLDLILDRTAQNEASHELMEATCALYGLIHARYVLTAAGLEAMYAKYTLQEFGNCPHFLCKRQSVVPLGVRDEPHIETVKLYCPKCQNVYVHPSHAAQRVDGAYFGTTFPHLFFMTYGTLVPDPLDKTFVPRVFGFRVHSTAPNGASASGDHHDQR 208
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: D8LK36_ECTSI (Casein kinase II subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK36_ECTSI) HSP 1 Score: 284 bits (726), Expect = 1.320e-91 Identity = 129/166 (77.71%), Postives = 148/166 (89.16%), Query Frame = 2 Query: 140 MSESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEASSELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQRVDGAYFGTTFPHLFF 637
MS+SSSS+G+D+WIQWFCGL+GHEMFCE++RGYIED FNLYGLRH+VP INDSLD+ILDR EAS ELMEAT +LYGLIHARYVLT +GLEAMYAKYTLQEFGNCPHFLC+GQ VVPLGVRDEPH+ETVKLYCPKCQD+YVHPSHAAQ + FG+++ H +
Sbjct: 1 MSDSSSSDGEDTWIQWFCGLEGHEMFCEIDRGYIEDAFNLYGLRHFVPRINDSLDLILDRTAQNEASHELMEATCALYGLIHARYVLTAAGLEAMYAKYTLQEFGNCPHFLCKGQSVVPLGVRDEPHIETVKLYCPKCQDVYVHPSHAAQ----SEFGSSWHHQLY 162
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A835ZJS8_9STRA (Casein kinase II subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJS8_9STRA) HSP 1 Score: 263 bits (673), Expect = 6.060e-83 Identity = 120/198 (60.61%), Postives = 154/198 (77.78%), Query Frame = 2 Query: 140 MSESSSS-EGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEASSELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVH--PSHAAQRVDGAYFGTTFPHLFFMTYGSMIPDPPEQRFVPRVFGFRVHSSAA 724
MSE+SS+ +G+DSW+QWFC LQGHEMFCEV+R YIEDGFNLYGLR +VP+I + LD+ILDRVG ++ +L++++Y LYGLIHARY++TT+GLEAM K+ +Q+FG CP LCR VVP+G+RDEP +E VKL+CP CQD+Y PS ++DGAYFGTTF HLF MTY P E +VPR+FGFR+H A+
Sbjct: 1 MSETSSTGDGEDSWVQWFCSLQGHEMFCEVDRSYIEDGFNLYGLRQYVPNITECLDIILDRVGPEDSDEDLLQSSYMLYGLIHARYIITTNGLEAMRKKHAMQDFGCCPRMLCRASAVVPIGMRDEPKLEGVKLFCPSCQDVYAPWAPSSPQAQLDGAYFGTTFAHLFCMTYEITAPTAKEL-YVPRIFGFRIHREAS 197
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A448YXJ5_9STRA (Casein kinase II subunit beta n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YXJ5_9STRA) HSP 1 Score: 246 bits (629), Expect = 6.490e-75 Identity = 119/205 (58.05%), Postives = 150/205 (73.17%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHP------SH----AAQRVDGAYFGTTFPHLFFMTYGSMIPDP--PEQRFVPRVFGFRVHSSA 721
+SS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LYGLIHARY++T GL+AMY KY +EFG CP C GQPV+P+G++DE +TVK++CPKCQ +Y P SH A VDGA FGTTFPHLF MT+ +++PDP + +VPRVFGFRVH SA
Sbjct: 6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSRSSHHGPAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPADSAYVPRVFGFRVHMSA 210
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A1Z5JIM2_FISSO (Casein kinase II subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIM2_FISSO) HSP 1 Score: 245 bits (625), Expect = 6.690e-75 Identity = 119/212 (56.13%), Postives = 153/212 (72.17%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQR------VDGAYFGTTFPHLFFMTYGSMIPDP-PEQR-FVPRVFGFRVHSSAADGAFARGQQA 754
+SS S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LY LIHARYV+T GL+AMY+KY ++FG CP C GQPV+P+G++D+ ++TVK+YCPKC +Y P + R VDGA FGTTFPHLF MT+ ++ PDP P Q +VPRVFGFRVH + + + ARG A
Sbjct: 6 DSSVSGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYSLIHARYVITAHGLDAMYSKYVAKDFGTCPLVPCGGQPVLPVGLKDDLGVDTVKIYCPKCSQVYHPPPIRSSRTGNTSGVDGAAFGTTFPHLFLMTFNNLSPDPLPVQTTYVPRVFGFRVHKTESTSSTARGADA 217
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A7R9W3V5_9STRA (Casein kinase II subunit beta (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3V5_9STRA) HSP 1 Score: 248 bits (634), Expect = 7.670e-75 Identity = 119/210 (56.67%), Postives = 152/210 (72.38%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQR---------------VDGAYFGTTFPHLFFMTYGSMIPDPPEQR--FVPRVFGFRVHSSA 721
+SS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LYGLIHARY++T GL+AMY KY +EFG CP C GQPV+P+G++DE ++TVK++CPKCQ +Y HP R VDGA FGTTFPHLF MT+ +++PDP +Q+ +VPRVFGFRVH SA
Sbjct: 78 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRACVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYAAKEFGTCPLIQCNGQPVLPVGLKDEMGVDTVKIFCPKCQCVY-HPPPIRSRSSHHGPGGSAGGSGSVDGAAFGTTFPHLFLMTFNNLVPDPLDQQSAYVPRVFGFRVHQSA 286
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A7S1ZP41_TRICV (Casein kinase II subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZP41_TRICV) HSP 1 Score: 248 bits (634), Expect = 7.900e-75 Identity = 119/210 (56.67%), Postives = 150/210 (71.43%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQR---------------VDGAYFGTTFPHLFFMTYGSMIPDP--PEQRFVPRVFGFRVHSSA 721
+SS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LYGLIHARY++T GL+AMY KY +EFG CP C GQPV+P+G++DE ++TVK++CPKCQ +Y HP R VDGA FGTTFPHLF MT+ +++PDP P +VPRVFGFRVH SA
Sbjct: 6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRACVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYAAKEFGTCPLIQCNGQPVLPVGLKDEMGVDTVKIFCPKCQCVY-HPPPIRSRSSHHGPGGSAAGSGAVDGAAFGTTFPHLFLMTFNNLVPDPLDPASAYVPRVFGFRVHQSA 214
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A7S0GAP8_9STRA (Casein kinase II subunit beta n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAP8_9STRA) HSP 1 Score: 248 bits (633), Expect = 1.360e-74 Identity = 118/200 (59.00%), Postives = 151/200 (75.50%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQR-----VDGAYFGTTFPHLFFMTYGSMIPD--PPEQRFVPRVFGFRVHSSA 721
ESS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S+L ++ +LYGLIHARY++T GL+AMY KY +EFG CP C GQPV+P+G+RDE ++VK++CPKCQ +Y HP + +R VDGA FGTTFPHLF MT+ +++PD + +VPRVFGFRVH SA
Sbjct: 6 ESSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRASVSNFSDCLDLILDRIGPDDSDESKLTQSACTLYGLIHARYIITAHGLDAMYNKYAAKEFGTCPLTQCTGQPVLPVGLRDEIGQDSVKIFCPKCQCVY-HPPYGGRRGGSGTVDGASFGTTFPHLFLMTFSNLVPDGLAADATYVPRVFGFRVHHSA 204
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A7S0Y7J2_9STRA (Casein kinase II subunit beta (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7J2_9STRA) HSP 1 Score: 245 bits (626), Expect = 2.970e-74 Identity = 117/214 (54.67%), Postives = 152/214 (71.03%), Query Frame = 2 Query: 128 LLPEMSESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHPSHAAQR---------VDGAYFGTTFPHLFFMTYGSMIPDP--PEQRFVPRVFGFRVHSSAADGA 733
++ +SS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LYGLIHARY++T+ GL+AMY KY +EFG CP C GQPV+P G++DE +TVK++CPKCQ ++ HP R VDGA FGTTFPHLF MT+ +++PDP + ++PRVFGFRVH SA A
Sbjct: 16 IMAYNEDSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYGLIHARYIITSHGLDAMYNKYASKEFGTCPLVQCAGQPVLPCGLKDEMGADTVKIFCPKCQCVF-HPPPVRSRHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPKDSAYIPRVFGFRVHMSARQRA 228
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Match: A0A1E7FEH7_9STRA (Casein kinase II subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEH7_9STRA) HSP 1 Score: 244 bits (624), Expect = 1.010e-73 Identity = 119/209 (56.94%), Postives = 150/209 (71.77%), Query Frame = 2 Query: 146 ESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSINDSLDVILDRVGHTEAS-SELMEATYSLYGLIHARYVLTTSGLEAMYAKYTLQEFGNCPHFLCRGQPVVPLGVRDEPHMETVKLYCPKCQDIYVHP------SH----AAQRVDGAYFGTTFPHLFFMTYGSMIPDPPEQ--RFVPRVFGFRVHSSAADGA 733
+SS+S D+ WIQWFCGL+GHEMFCEVER YIEDGFNLYGLR V + +D LD+ILDR+G ++ S L ++ +LYGLIHARY++T GL+AMY KY +EFG CP C GQPV+P+G++DE +TVK++CPKCQ +Y P SH A VDGA FGTTFPHLF MT+ +++PDP Q ++PRVFGFRVH S A
Sbjct: 6 DSSASGHDEPWIQWFCGLKGHEMFCEVERSYIEDGFNLYGLRTCVSNFSDCLDLILDRIGPDDSDDSHLTQSACTLYGLIHARYIITAHGLDAMYNKYASKEFGTCPLVQCAGQPVLPVGLKDEMGADTVKIFCPKCQCVYHPPPVRSRSSHHGGAGAAGVDGAAFGTTFPHLFLMTFSNLVPDPLPQDSAYIPRVFGFRVHISTRQRA 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9576.17285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9576.17285.1 >prot_H-paniculata_contig9576.17285.1 ID=prot_H-paniculata_contig9576.17285.1|Name=mRNA_H-paniculata_contig9576.17285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=409bp MSESSSSEGDDSWIQWFCGLQGHEMFCEVERGYIEDGFNLYGLRHWVPSIback to top mRNA from alignment at H-paniculata_contig9576:1042..8573+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9576.17285.1 ID=mRNA_H-paniculata_contig9576.17285.1|Name=mRNA_H-paniculata_contig9576.17285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7532bp|location=Sequence derived from alignment at H-paniculata_contig9576:1042..8573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9576:1042..8573+ >mRNA_H-paniculata_contig9576.17285.1 ID=mRNA_H-paniculata_contig9576.17285.1|Name=mRNA_H-paniculata_contig9576.17285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2454bp|location=Sequence derived from alignment at H-paniculata_contig9576:1042..8573+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |