mRNA_H-paniculata_contig9573.17283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A6H5L521_9PHAE (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L521_9PHAE) HSP 1 Score: 231 bits (589), Expect = 9.230e-75 Identity = 116/145 (80.00%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYFDTG 438 VPY REG+ VA+WMPVSQ LQQSRIIMVG + +E +LIAMLLYHEK +P KK+SLYFNCPGALIRPALAVYDTLMHM PE+STLNLGLATGMVSFLCAAG +GQRYALPN+RFLMQRTGMED YQGQASDIGVEV D G Sbjct: 78 VPYTREGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVGAKRDEG 222
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: D7FM45_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM45_ECTSI) HSP 1 Score: 229 bits (583), Expect = 2.110e-73 Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVR 420 VPY R+G+ VA+WMPVSQ LQQSRIIMVG + +E +LIAMLLYHEK +P KK+SLYFNCPGALIRPALAVYDTLMHM PE+STLNLGLATGMVSFLCAAG +GQRYALPN+RFLMQRTGMED YQGQASDIGVEV+ Sbjct: 8 VPYTRDGSTVATWMPVSQCLQQSRIIMVGKFIDEEYANQLIAMLLYHEKNDPNKKISLYFNCPGALIRPALAVYDTLMHMGPELSTLNLGLATGMVSFLCAAGKRGQRYALPNSRFLMQRTGMEDPYQGQASDIGVEVQ 146
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A835YH32_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH32_9STRA) HSP 1 Score: 191 bits (485), Expect = 5.980e-58 Identity = 97/147 (65.99%), Postives = 116/147 (78.91%), Query Frame = 1 Query: 7 QVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYFDTGN 441 QVPYK G+ A+W+ V+QRLQ+SRI+MVG + DE +LIAM+LY EKE+ K VSLYFN PGA +RPA+AV+DT+ M STLNLGLATGMVSFLCAAG +G+R+ALPNARFLMQRTGMED Y+GQASDIG+EV Q N Sbjct: 54 QVPYKPPGSDQATWVGVNQRLQRSRILMVGKFIDDEYANQLIAMMLYLEKESRDKPVSLYFNSPGANLRPAMAVFDTMQQMAFPTSTLNLGLATGMVSFLCAAGDKGKRFALPNARFLMQRTGMEDAYRGQASDIGIEVGQMVKKNN 200
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: F0Y3R0_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3R0_AURAN) HSP 1 Score: 160 bits (406), Expect = 8.690e-47 Identity = 81/140 (57.86%), Postives = 107/140 (76.43%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDELR--LIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423 VPY+ G+ ++ + QRL + RI++VG+ L +E LIA+LLY E+P K +S+YFN PGAL++P LAVYDTL + V+T+NLGLATGM +FLC AGT+G RYALPNARFLMQRTG++D +QGQASDIG+ VR+ Sbjct: 34 VPYQPPGSDSHMFVDIYQRLYRDRIMLVGNFLDEEQANSLIAVLLYLRFEDPKKPISIYFNVPGALMKPCLAVYDTLQTLECPVTTVNLGLATGMGAFLCGAGTKGCRYALPNARFLMQRTGLDDPFQGQASDIGLVVRE 173
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S2BG56_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BG56_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.110e-46 Identity = 77/138 (55.80%), Postives = 109/138 (78.99%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417 VP+K +G + ++P+SQRL + RI+++G+ L +E LIA+LLY ++++P K++SLYFN PGAL++P LAVYDTL M + TLNLGLATGM +FLC+AGT G R+ LPNARFL+Q+TG++D +QGQA DIG++V Sbjct: 64 VPWKPQGMESHQFVPISQRLYRERIVILGNFLDEEAANNLIAVLLYMKQDDPNKQISLYFNVPGALLKPTLAVYDTLKSMECPIMTLNLGLATGMGAFLCSAGTPGLRFCLPNARFLLQKTGLDDPFQGQAVDIGLKV 201
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A8J2SWQ7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWQ7_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.320e-46 Identity = 84/145 (57.93%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 1 ISQVPYKREGAQVASWMPVS--QRLQQSRIIMVGSELPDELR--LIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423 + QVPY GA+ M V Q L + RI++VG+ L +E LIA+LL+ E+P K +S+YFN PGAL++P LAVYDTL + V+T+NLGLATGM +FLC AGT+G RYALPNARFLMQRTG++D YQGQASDIG+ VR+ Sbjct: 40 VPQVPYSPPGAEQGQHMYVDIYQALYRDRIMLVGNFLDEEQANSLIALLLFMRFEDPRKPISIYFNVPGALMKPCLAVYDTLRTLECPVTTVNLGLATGMGAFLCGAGTKGMRYALPNARFLMQRTGLDDPYQGQASDIGLMVRE 184
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A6U3QDB9_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QDB9_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.370e-46 Identity = 79/138 (57.25%), Postives = 106/138 (76.81%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417 VPY + ++P+SQRL R+I++GS L +E LIA LLY +KE+ KK+SLY N PGAL++P+LAVYDTL ++ ++TLNLGLATGM +FLC AGT+G R+ALPNARFL+Q+TG++D YQGQA DIG++V Sbjct: 65 VPYSPSAVEGHQYLPISQRLLMDRVIVLGSFLDEEQANNLIATLLYLQKEDREKKISLYMNIPGALLKPSLAVYDTLKSLKCPITTLNLGLATGMGAFLCGAGTKGYRFALPNARFLLQKTGLDDPYQGQAVDIGLKV 202
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S3K3R8_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3R8_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.080e-44 Identity = 74/143 (51.75%), Postives = 104/143 (72.73%), Query Frame = 1 Query: 1 ISQVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQ 423 + QVPY+ G W + QRL + R+++V + + ++ LIA LLY + ++P K +S+YFN GAL++P LAVYDT+ + +ST+NLGLATGM +FLC AGT+G RY+LPNARFLMQRTG++D YQGQA+DIG+ V + Sbjct: 45 VPQVPYQPPGTDYIMWTDIYQRLYRDRVLLVSNFIDEDKANNLIATLLYLKYDSPSKPISIYFNVAGALMKPCLAVYDTIRTLDCPISTVNLGLATGMGAFLCGAGTKGMRYSLPNARFLMQRTGLDDPYQGQATDIGLIVSE 187
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A0G4ERW5_VITBC (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERW5_VITBC) HSP 1 Score: 153 bits (386), Expect = 8.570e-44 Identity = 73/143 (51.05%), Postives = 105/143 (73.43%), Query Frame = 1 Query: 7 QVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRPEVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEVRQYF 429 QVPYK G+ +W+ ++ RL + R+I VG L +E ++IA LLY E+ + +SLY N PGAL++P+LA+YD ++ + +STLNLGLATGM +FLCAAGT GQR+ LPNARFLMQ+TGME+ +GQA+D+ ++V + + Sbjct: 8 QVPYKPPGSDFYTWVDLNTRLLRDRVIFVGRFLDEEAANQIIATLLYLRSEDSTRPISLYMNVPGALMKPSLAIYDAMIGVECPISTLNLGLATGMGAFLCAAGTPGQRFCLPNARFLMQKTGMEEGMRGQATDLAIDVAENY 150
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Match: A0A7S2KWW7_9STRA (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWW7_9STRA) HSP 1 Score: 154 bits (390), Expect = 2.490e-43 Identity = 74/140 (52.86%), Postives = 106/140 (75.71%), Query Frame = 1 Query: 10 VPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDEL--RLIAMLLYHEKENPGKKVSLYFNCPGALIRPALAVYDTLMHMRP--EVSTLNLGLATGMVSFLCAAGTQGQRYALPNARFLMQRTGMEDVYQGQASDIGVEV 417 VP++ G+ A ++ + RL + RI+++G + + ++I++LLY +KE+P KK++LYFNCPGA +RPALAVYDT+M + ++STLNLGLATGM S LC GT+G R A+PN+RFL+QR G+E +QGQASDIG+EV Sbjct: 68 VPWQPPGSDYAQFVDIYSRLYRERIMLIGKFIDQQEANQIISILLYLKKEDPDKKITLYFNCPGAELRPALAVYDTIMQCKETCDISTLNLGLATGMASLLCGCGTKGMRAAMPNSRFLLQRVGLERPFQGQASDIGLEV 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9573.17283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9573.17283.1 >prot_H-paniculata_contig9573.17283.1 ID=prot_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp ISQVPYKREGAQVASWMPVSQRLQQSRIIMVGSELPDELRLIAMLLYHEKback to top mRNA from alignment at H-paniculata_contig9573:3703..4831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9573.17283.1 ID=mRNA_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1129bp|location=Sequence derived from alignment at H-paniculata_contig9573:3703..4831- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9573:3703..4831- >mRNA_H-paniculata_contig9573.17283.1 ID=mRNA_H-paniculata_contig9573.17283.1|Name=mRNA_H-paniculata_contig9573.17283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig9573:3703..4831- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |