mRNA_H-paniculata_contig9554.17273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZC28_9PROT (Isocitrate dehydrogenase (NADP(+)) (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZC28_9PROT) HSP 1 Score: 61.2 bits (147), Expect = 1.020e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 6 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 38
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A7C7ZQL3_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=Candidatus Thioglobus sp. TaxID=2026721 RepID=A0A7C7ZQL3_9GAMM) HSP 1 Score: 59.3 bits (142), Expect = 6.960e-10 Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRP+EYSVIATLNLNGDY+SDALAA V G
Sbjct: 15 QQILLRPEEYSVIATLNLNGDYVSDALAAQVGG 47
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2G6LIM3_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6LIM3_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A1G0X5H9_9GAMM (Isocitrate dehydrogenase [NADP] n=1 Tax=Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 TaxID=1798567 RepID=A0A1G0X5H9_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2E1NXF8_9GAMM (Isocitrate dehydrogenase [NADP] n=3 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2E1NXF8_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 288 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 320
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A536ZL74_9PROT (Isocitrate dehydrogenase [NADP] n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZL74_9PROT) HSP 1 Score: 61.2 bits (147), Expect = 8.880e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: E8PMC4_THESS (Isocitrate dehydrogenase [NADP] n=48 Tax=Thermaceae TaxID=188786 RepID=E8PMC4_THESS) HSP 1 Score: 61.2 bits (147), Expect = 8.890e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 290 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 322
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A2Z5V352_9COXI (Isocitrate dehydrogenase [NADP] n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2Z5V352_9COXI) HSP 1 Score: 61.2 bits (147), Expect = 8.900e-10 Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGDYISDALAA V G
Sbjct: 289 QQILLRPDEYSVIATLNLNGDYISDALAAQVGG 321
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: F3KH02_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KH02_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 9.460e-10 Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRPDEYSVIATLNLNGD+ISDALAA V G
Sbjct: 54 QQILLRPDEYSVIATLNLNGDFISDALAAQVGG 86
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Match: A0A5E6NU25_9GAMM (Isocitrate dehydrogenase (NADP(+)) n=1 Tax=uncultured Gammaproteobacteria bacterium TaxID=86473 RepID=A0A5E6NU25_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 9.890e-10 Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 Query: 7 QQILLRPDEYSVIATLNLNGDYISDALAAGVEG 105
QQILLRP+EYSVIATLNLNGDYISDALAA V G
Sbjct: 138 QQILLRPEEYSVIATLNLNGDYISDALAAQVGG 170 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9554.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9554.17273.1 >prot_H-paniculata_contig9554.17273.1 ID=prot_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp VTQQILLRPDEYSVIATLNLNGDYISDALAAGVEGGGGIFFFF*back to top mRNA from alignment at H-paniculata_contig9554:40..171- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9554:40..171- >mRNA_H-paniculata_contig9554.17273.1 ID=mRNA_H-paniculata_contig9554.17273.1|Name=mRNA_H-paniculata_contig9554.17273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig9554:40..171- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |