mRNA_H-paniculata_contig955.17270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig955.17270.1 vs. uniprot
Match: A0A0J7K7U6_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7U6_LASNI) HSP 1 Score: 60.1 bits (144), Expect = 1.150e-6 Identity = 33/106 (31.13%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 114 VEEESWISDSGATSHATPSAAHMSSYRRVKET-LRIASGQ-VLPIVGRGNLSITFRTREGNASLAVLNVAHAPELHYNLFSLTRVADAGHKYVGDREGINVYLKTG 425
V+ SWI D+ A++H T + +++ V + + +A G PI G GN+ ++F+ + +++L +LNV ++P+++ NL S ++ +A K++G + I+V+ KTG
Sbjct: 267 VDSNSWIFDTAASAHFTGDRSLFQNFQTVHDRQMSVAVGDSTYPIEGMGNIELSFK-EDPDSTLTLLNVLYSPKINRNLISGSKFDEAQAKFIGGKNKISVFTKTG 371
BLAST of mRNA_H-paniculata_contig955.17270.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO) HSP 1 Score: 54.7 bits (130), Expect = 7.650e-5 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 123 ESWISDSGATSHATPSAAHMSSYRRVK-ETLRIASGQVLPIVGRGNLSITFRTREGNASLAVL-NVAHAPELHYNLFSLTRVADAGH 377
+SWI DSGA+ H TPS +S+Y + + +A G+ L IVGRG+++I + + SL L NV H P L NL S+ ++ D GH
Sbjct: 265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI----KTSSGSLWTLHNVRHIPALKRNLISIGQLDDEGH 347
BLAST of mRNA_H-paniculata_contig955.17270.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA) HSP 1 Score: 54.3 bits (129), Expect = 7.930e-5 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 3 Query: 123 ESWISDSGATSHATPSAAHMSSYRRVK-ETLRIASGQVLPIVGRGNLSITFRTREGNASLAVLNVAHAPELHYNLFSLTRVADAGHK 380
ESWI DSGA+ H TPS +++Y + + +A G+ L IVG+G+++I RT G+ + NV H P L NL S+ ++ D GH+
Sbjct: 288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAI--RTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 371
BLAST of mRNA_H-paniculata_contig955.17270.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO) HSP 1 Score: 54.7 bits (130), Expect = 8.000e-5 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 123 ESWISDSGATSHATPSAAHMSSYRRVK-ETLRIASGQVLPIVGRGNLSITFRTREGNASLAVL-NVAHAPELHYNLFSLTRVADAGH 377
+SWI DSGA+ H TPS +S+Y + + +A G+ L IVGRG+++I + + SL L NV H P L NL S+ ++ D GH
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI----KTSSGSLWTLHNVRHIPALKRNLISIGQLDDEGH 1243 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig955.17270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig955.17270.1 >prot_H-paniculata_contig955.17270.1 ID=prot_H-paniculata_contig955.17270.1|Name=mRNA_H-paniculata_contig955.17270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MFVDGGRSGELVIGVEEESWISDSGATSHATPSAAHMSSYRRVKETLRIAback to top mRNA from alignment at H-paniculata_contig955:4427..6086- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig955.17270.1 ID=mRNA_H-paniculata_contig955.17270.1|Name=mRNA_H-paniculata_contig955.17270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1660bp|location=Sequence derived from alignment at H-paniculata_contig955:4427..6086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig955:4427..6086- >mRNA_H-paniculata_contig955.17270.1 ID=mRNA_H-paniculata_contig955.17270.1|Name=mRNA_H-paniculata_contig955.17270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig955:4427..6086- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |