mRNA_H-paniculata_contig9548.17269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.290e-41 Identity = 83/158 (52.53%), Postives = 106/158 (67.09%), Query Frame = 2 Query: 41 DVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRP-------SICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGD 493
+VI ++AF FS WWAPLM TLS LR DWA+ P VHGF+ R+ AER+L R+RGTFLLRFSE + G LVVSFTE+V QA +S +A P S+C +HCLV V +GG C +EV E G+ V Y LH+LV+ C ++ LYP+V KE F +
Sbjct: 117 NVISLEAFVEFSLWWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMCVKHCLVEVRRGGWCYIEV-EQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAFDE 273
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 159 bits (402), Expect = 1.810e-38 Identity = 83/158 (52.53%), Postives = 105/158 (66.46%), Query Frame = 2 Query: 41 DVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRP-------SICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGD 493
DVI + AF FS WWAPLM TLS LR DWA+ P VHGF+ R+ AER+L R+RGTFLLRFSE + G LVVSFTE+V QA ++S + P S+C +HCLV V +GG C +EV E G+ V Y LH+LV+ C ++ LYP+V KE F +
Sbjct: 786 DVISLDAFVEFSLWWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLLERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMCVKHCLVEVRRGGWCYIEV-EQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFDE 942
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 138 bits (348), Expect = 1.870e-31 Identity = 76/164 (46.34%), Postives = 100/164 (60.98%), Query Frame = 2 Query: 26 GAVEEDVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGDRVAWEPPT 517
G D I V+AFA+FS+WWAPL+ TL +R DWA P+ VHGF+ R+ A+R L R+ GTFLLRFSE K+GALV+SFT+ +PG R S+ +H LV V GG C ++ E G Y+ LH+ V LK LYP++PKE+ FG+ P T
Sbjct: 750 GGCRYDFISVEAFAKFSQWWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQRECGTFLLRFSESKMGALVISFTQP-SVSPG--------RRSLSVKHSLVEVKWGGRCCIQA-EKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAFGETPRSPPAT 903
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 128 bits (321), Expect = 9.820e-29 Identity = 79/197 (40.10%), Postives = 104/197 (52.79%), Query Frame = 2 Query: 26 GAVEEDVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTE-NVRQAPGSSAS-------SIAHRPSICFQ-------------------------HCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGDRVAWEPPT 517
G +D + V+AFA FS+WWAPLM TL +R DWAT P+ VHGF+ R+ ++R L R+ GTFLLRFSE ++GALV+SFT+ +V + S S S A R + C Q H LV V GG C ++ E G Y LH+ V LK LYP++PKE+ FG+ P T
Sbjct: 253 GDGRDDFVSVEAFANFSQWWAPLMATLGIIRNDWATTRPVRVHGFMSRVASKRLLMQRECGTFLLRFSESRMGALVISFTQPSVSVSRLSRISRCLVPFISCAGRLACCLQGSPINPRIVLQQFQLRSGRRSLSVKHSLVEVKWGGRCCIQA-EKGGMRCYGSLHDFVRQIPELKKLYPDIPKEEAFGETPRSPPAT 448
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE) HSP 1 Score: 124 bits (312), Expect = 8.230e-27 Identity = 71/160 (44.38%), Postives = 87/160 (54.37%), Query Frame = 2 Query: 38 EDVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGDRVAWEPPT 517
ED I V F+RFS+WW PLM TL +R DWA + PI VHGF+GR EA+ L+ + FLLRFSER G LVVS C H LV V +GG C +EV + G Y LH+LV L+ LYP++PKEQVF + P T
Sbjct: 889 EDPISVGTFSRFSQWWTPLMVTLGNIRNDWARIWPIRVHGFIGRHEAQALLRMKPTA-FLLRFSERHPGKLVVS--------------------RACHHHSLVEVTEGGQCFMEVDKRGTRRKYESLHDLVTQNSLLRQLYPDIPKEQVFKGKAPAAPET 1027
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.190e-25 Identity = 67/159 (42.14%), Postives = 85/159 (53.46%), Query Frame = 2 Query: 41 DVIPVQAFARFSRWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGDRVAWEPPT 517
D I V+ FA+FSRWW PLM TL +R DWA P+ VHGF+GR+E + L+ R RG FLLRFSE G LV+S + H LV V +GG C + V + G Y LH+LV +L+ LY ++P EQVF R P T
Sbjct: 924 DFISVETFAKFSRWWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLR-RARGAFLLRFSESHPGKLVISRA---------------------YHHSLVEVTEGGRCYMTVNQQGTRREYESLHDLVTQNGQLRHLYQDIPMEQVFTGRAPAAPET 1060
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: T1KPX0_TETUR (SH2 domain-containing protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KPX0_TETUR) HSP 1 Score: 59.3 bits (142), Expect = 8.970e-6 Identity = 48/141 (34.04%), Postives = 64/141 (45.39%), Query Frame = 2 Query: 71 FSRWWAPLMRTLSRLRKD-WATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVGEAGASVTYS-DLHELVMDCERLKTLYPNVPKEQVF 487
F W+ +++ KD W ++HGF+ R +AE L + GTFLLRFSE+K+GA+ SIA R F G+ V + YS L E + RLK LYPN+PKEQVF
Sbjct: 413 FWEWFYSILKLNREHLKDLWQP--QRLIHGFISRKDAEDALMDKPEGTFLLRFSEKKLGAI-----------------SIACRAHSTF----------GNSVYMVEPYSLNDLYSVSLSERIHYTRRLKYLYPNIPKEQVF 524
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: X6PCG3_RETFI (SH2 domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PCG3_RETFI) HSP 1 Score: 57.0 bits (136), Expect = 3.850e-5 Identity = 30/106 (28.30%), Postives = 50/106 (47.17%), Query Frame = 2 Query: 77 RWWAPLMRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENV---RQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVG 385
RW++ + + + L W P+++HGFV R+EAE L GTFL+RFS ++ +S+ E + + G + + P H F+ G C+ G
Sbjct: 245 RWFSGICKMVVSLSHVWDQQSPVIIHGFVTRIEAEAMLDCCPVGTFLIRFSNNYDDSIAISYVEGKVVKKNSLGQQSCFVEDEPHGVIGHIKGFLAPAGKCEFIFG 350
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Match: A0A7M4EWV7_CROPO (Signal transducer and activator of transcription n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4EWV7_CROPO) HSP 1 Score: 57.4 bits (137), Expect = 4.190e-5 Identity = 42/162 (25.93%), Postives = 75/162 (46.30%), Query Frame = 2 Query: 38 EDVIPVQAFARFSRWWAPLMRTLSR-LRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGALVVSFTENVRQAPGSSASSIAHRPSICFQHCLVFVGKGGSCKLEVGEAGASVTYSDLHELVMDCERLKTLYPNVPKEQVFGDRVAWEPPTP 520
++++P + F F +W+ ++ R L+ W+ + + GF+ + R L GTFLLR+S+ ++G + +++ R GS ++ F K S + L + + D +L+ LYPN+PK+Q FG+ EPPTP
Sbjct: 478 KEILPGRGFT-FWQWFDGVLDLTKRCLKSYWSDRL---IRGFISKQYVSRLLSTAPDGTFLLRYSDSEIGGVTIAYL--ARAEDGSWQ----------VENIQPFSAKDLSIR-------------SLGDRIRDLVQLRNLYPNIPKDQAFGNHYNSEPPTP 610 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9548.17269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9548.17269.1 >prot_H-paniculata_contig9548.17269.1 ID=prot_H-paniculata_contig9548.17269.1|Name=mRNA_H-paniculata_contig9548.17269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp MRTLSRLRKDWATLVPIVVHGFVGRMEAERKLQGRDRGTFLLRFSERKVGback to top mRNA from alignment at H-paniculata_contig9548:1674..5210- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9548.17269.1 ID=mRNA_H-paniculata_contig9548.17269.1|Name=mRNA_H-paniculata_contig9548.17269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3537bp|location=Sequence derived from alignment at H-paniculata_contig9548:1674..5210- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9548:1674..5210- >mRNA_H-paniculata_contig9548.17269.1 ID=mRNA_H-paniculata_contig9548.17269.1|Name=mRNA_H-paniculata_contig9548.17269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig9548:1674..5210- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |