mRNA_H-paniculata_contig9541.17264.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE) HSP 1 Score: 189 bits (479), Expect = 2.150e-48 Identity = 118/233 (50.64%), Postives = 140/233 (60.09%), Query Frame = 3 Query: 369 PMCSNGIVGIQSKNSCCAAGCGQCGGSGCSTIPGFTADDCCESAVQMNGKLCEVTAAAPCIIDAASTPXXXXXXXXXVGPPEGTCEGGIPGIQSKLSCCVLACGQCGGSGCSTAGGLTSAECCESGVASSGVLCEVSGAAPCVVDAAGIIDPIVESSPIIPSLPDGMCAGGIVGIQSKDVCCMEACGQCGGSGCSTVGGFGSDKCCEGGVRDTGVMCADSGVAPCVLGGASVP 1067
PMC GIVGIQ+K CC+A CG CGG GCS G + D CC V +G+LC VT APCI A TP XXXXXXXX C+GGI GIQ+K CC +CG CGG GCS G + A CC GV +SG LC V+G APC+ A + ++ MC GGI+GIQ+ DVCC +CG C GSGCS G G D CC GGVR +G C+ +G APC+ G A P
Sbjct: 233 PMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGS-DACCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXXTVEVPMCDGGIVGIQAKEVCCSASCGSCGGVGCSGRDGGSDA-CCGGGVTASGRLCAVTGEAPCITGPAPTPEXXXXXXXXX-TVEAPMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDG-GPDACCGGGVRASGRFCSVTGEAPCITGPAPTP 461
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.530e-45 Identity = 115/233 (49.36%), Postives = 141/233 (60.52%), Query Frame = 3 Query: 369 PMCSNGIVGIQSKNSCCAAGCGQCGGSGCSTIPGFTADDCCESAVQMNGKLCEVTAAAPCIIDAASTPXXXXXXXXXVGPPEGTCEGGIPGIQSKLSCCVLACGQCGGSGCSTAGGLTSAECCESGVASSGVLCEVSGAAPCVVDAAGIIDPIVESSPIIPSLPDGMCAGGIVGIQSKDVCCMEACGQCGGSGCSTVGGFGSDKCCEGGVRDTGVMCADSGVAPCVLGGASVP 1067
PMC GIVGIQ+ + CC+A CG CGGSGC+ G + + CC V+ +G+ C +T APC+ A TPXXXXXXXXX C+GGI GIQS CC +CG CGGSGC+ G S CC GV +SG C ++G APC+ A ++ MC GGIVGIQS DVCC +CG CGGSGCS G GS+ CC GGVR +G C+ +G APC+ G A P
Sbjct: 156 PMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGS-ESCCGGGVRASGRYCSITGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCTGRDG-GSESCCGGGVRASGRYCSITGEAPCMTGPAPT-PXXXXXXXXXXTVEVPMCDGGIVGIQSSDVCCSASCGSCGGSGCSGRDG-GSESCCGGGVRGSGRYCSVTGEAPCMTGAAPTP 384
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 175 bits (443), Expect = 7.290e-44 Identity = 107/330 (32.42%), Postives = 139/330 (42.12%), Query Frame = 3 Query: 870 CAGGIVGIQSKDVCCMEACGQCGGSGCST-VGGFGSDKCCEGGVRDTGVMCADSGVAPCVLGGASVPVPDPIAVAPTVPXXXXXXXXXXXSEPKAGAVFIGCFADLRADRMMENVSEDPEMTTEMCEAICSEYEVFGTQFGVQCWCGGNHPDTATYGEPIMAACDMPCPGNPETMCGGRDTMSVYEHALT--EPTGAHDHGCFADSFADRIMERVLIDDFMTTEMCEVRCDGSRYYGTQYGTE-------------------------------------------CWCSVID-DIDAFRHGESTLCTYPCGGNVDQLCGGELAMNIYEK 1718
C G+ G+ + CC CG CGGSGCS+ G D CC + G++CADSG APC+ G VP+ E + F+GCF+D R+ MT E+C C+ +GTQ+ +CWCG D G + CDMPC G+ CGG MS+YEH + E GC++D R+ E+ + D MT E+C C GS YYGTQY TE CWC D DA G +C PCGG+ + CGG AM+IYE
Sbjct: 25 CDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCI-GDVGDDVPN---------------------ETEG---FLGCFSDPADSRVFVQEISSASMTAEVCSEACAGSAYYGTQYSTECWCGAEGADYDANGAGV---CDMPCGGDAGETCGGFYAMSIYEHDVDGGESDDPSYLGCYSDPADSRVFEQKISSDSMTAEVCSEACAGSAYYGTQYSTEHTVHASHVSTKTPSVVHTPPTLPDIVPLLCGNATHYCFAFYKQCWCGAEGADYDANGAG---VCDMPCGGDAGETCGGFYAMSIYEN 323
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI) HSP 1 Score: 177 bits (449), Expect = 9.050e-44 Identity = 112/226 (49.56%), Postives = 139/226 (61.50%), Query Frame = 3 Query: 369 PMCSNGIVGIQSKNSCCAAGCGQCGGSGCSTIPGFTADDCCESAVQMNGKLCEVTAAAPCIIDAASTPXXXXXXXXXVGPPEGTCEGGIPGIQSKLSCCVLACGQCGGSGCSTAGGLTSAECCESGVASSGVLCEVSGAAPCVVDAAGIIDPIVESSPIIPSLPDGMCAGGIVGIQSKDVCCMEACGQCGGSGCSTVGGFGSDKCCEGGVRDTGVMCADSGVAPCV 1046
PMC GIVGIQ+ + CC+A CG C G+GCS G + CC VQ +G+ C VT APC+ A TPXXXXXXXXX C+GGI GIQ+ CC +CG CGG+GCS+ G + A CC GV +SG C V+G APC+ AA + ++ MC GGIVGIQ+ DVCC +CG CGG+GCS G GS CC GGVR +G C+ +G APC+
Sbjct: 106 PMCDGGIVGIQASDVCCSASCGSCAGTGCSGRDGGSGA-CCGGGVQASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGGIVGIQTSDVCCSASCGSCGGTGCSSRDGGSGA-CCGGGVRASGRYCSVTGEAPCMTGAAPTPEXXXXXXXXX-TVEVPMCDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDG-GSGACCGGGVRASGRYCSVTGEAPCM 327
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE) HSP 1 Score: 181 bits (458), Expect = 1.020e-43 Identity = 121/248 (48.79%), Postives = 143/248 (57.66%), Query Frame = 3 Query: 351 RNLQVD-PMCSNGIVGIQSKNSCCAAGCGQCGGSGCSTIPGFTADDCCESAVQMNGKLCEVTAAAPCIIDAASTPXXXXXXXXXVGPPEGT---CEGGIPGIQSKLSCCVLACGQCGGSGCSTAGGLTSAECCESGVASSGVLCEVSGAAPCVVDAAGI-IDPIVESSPIIPSLPDGMCAGGIVGIQSKDVCCMEACGQCGGSGCSTVGGFGSDKCCEGGVRDTGVMCADSGVAPCVLGGASVPVPDP 1079
R LQ + P C GIVGIQS + CC+ CG CGG+GC+ G AD CC V+ +G+ C VT APCI A TP XXXXXX EG C+GGI GIQS CC +CG CGGSGC+ G A CC GV +SG C V+G APC+ A +P MC GGIVGIQS DVCC +CG CGG+GC TV G+D CC GGVR +G C+ +G APCV+ P P P
Sbjct: 44 RRLQAEVPTCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGG-ADACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXD-EGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDA-CCGGGVRASGRYCSVTGEAPCMTGPAPTPXXXXXXXXXXTEEVP--MCDGGIVGIQSSDVCCSLSCGSCGGTGC-TVRDGGADACCGGGVRASGRDCSVTGEAPCVVTSGVPPTPVP 285
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 169 bits (427), Expect = 3.620e-40 Identity = 112/240 (46.67%), Postives = 133/240 (55.42%), Query Frame = 3 Query: 375 CSNGIVGIQSKNS-CCAAGCGQCGGSGCSTIP---GFTADDCCESAVQMNGKLCEVTAAAPCIIDAASTPXXXXXXXXXVGPPEGTCEGGIPGIQSK-LSCCVLACGQCGGSGCSTAG---GLTSAECCESGVASSGVLCEVSGAAPCVVDAAGIIDPIVESSPIIPSLPDGMCAGGIVGIQSKDV-CCMEACGQCGGSGCSTVG---GFGSDKCCEGGVRDTGVMCADSGVAPCVLGGA 1058
CS+GI GI CC GCGQC GSGCST G T+ CC ++ +G C+ T APCI +A P XXXXXX GTC GI GI + CC L CGQC GSGCSTAG GLTS+ CC G+ SSG C+ +G APC+ +A D + G C+ GI GI V CC CGQC GSGCST G G S CC G ++ +G C D+GVAPC+ G A
Sbjct: 535 CSDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSA--PDADXXXXXXXXXXVGTCNDGIEGIDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAD---DXXXXXXXXXVGTCSDGIEGIDGNGVVCCPLGCGQCVGSGCSTDGAANGLTSSSCCGGEIKSSGNYCDDTGVAPCIYGSA 769
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: D8LEK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI) HSP 1 Score: 159 bits (402), Expect = 1.430e-38 Identity = 87/206 (42.23%), Postives = 114/206 (55.34%), Query Frame = 3 Query: 1137 SEPKAGA-VFIGCFADLRADRMMENVS-EDPEMTTEMCEAICSEYEVFGTQFGVQCWCGGNHPDTATYGEPIMAACDMPCPGNPETMCGGRDTMSVY---EHALTEPTGAHDH-------GCFADSFADRIMER-VLIDDFMTTEMCEVRCDGSRYYGTQYGTECWCSVIDDIDAFRHGESTLCTYPCGGNVDQLCGGELAMNIYE 1715
S +AG+ + +GC+ D DR+M+N++ D MTTE+CE C F TQ+ +CWCG D A +GE C C G+ CGG + +VY + + PT + GC+AD DRIM+ VL D MTTE+CE+ C+GS Y+ TQYG ECWC D HGEST CTY C G+ DQ CGG A N+Y
Sbjct: 190 SPTEAGSSLALGCYEDDPEDRIMDNLALSDSSMTTELCELTCVGSTYFATQYRRECWCGSADADYALHGE--STGCTYACSGDTSQTCGGFNAANVYLYPDDSTPSPTPSPIQEGPSPALGCYADDPEDRIMDDLVLSDSSMTTELCELTCEGSTYFATQYGRECWCGSAG-ADYALHGESTDCTYACSGDTDQTCGGFDAANVYR 392
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 162 bits (409), Expect = 1.590e-38 Identity = 111/247 (44.94%), Postives = 133/247 (53.85%), Query Frame = 3 Query: 375 CSNGIVGIQSKNS-CCAAGCGQCGGSGCSTIP---GFTADDCCESAVQMNGKLCEVTAAAPCII----DAASTPXXXXXXXXXVGPPEGTCEGGIPGIQSK-LSCCVLACGQCGGSGCSTAG---GLTSAECCESGVASSGVLCEVSGAAPCVVDAA---GIIDPIVESSPIIPSLPDGMCAGGIVGIQSKDV-CCMEACGQCGGSGCSTVG---GFGSDKCCEGGVRDTGVMCADSGVAPCVLGGA 1058
CS+G G+ CC GCGQC GSGCST G T+ CC ++ +G C+ T APCI DA XXXXXXXXX GTC GI G+ + CC L CGQC GSGCSTAG GLTS+ CC G+ SSG C+ +G APC+ +A G G C+ GI G+ V CC CGQC GSGCST G G S CC G ++ +G C D+GVAPC+ G A
Sbjct: 270 CSDGTEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGGIKSSGNYCDDTGVAPCIYGSAPDAGDDXXXXXXXXXXXXXXVGTCSDGIEGLDGNGVVCCPLGCGQCAGSGCSTAGAANGLTSSSCCGGRIKSSGNYCDDTGVAPCIYGSA 516
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.920e-35 Identity = 101/323 (31.27%), Postives = 141/323 (43.65%), Query Frame = 3 Query: 870 CAGGIVGIQSKDVCCMEACGQCGGSGCST-VGGFGSDKCCEGGVRDTGVMCADSGVAPCVLGGASVPVPDPIAVAPTVPXXXXXXXXXXXSEPKAGAVFIGCFADLRADRM-MENVSEDPEMTTEMCEAICSEYEVFGTQFGVQCWCGGNHPDTATYGEPIMAACDMPCPGNPETMCGGRDTMSVYEHA-LTEPTGAHDHGCFADSFADRIMERVLIDDFMTTE-----------------------------MCEVR--------CDGSRYYGTQYGTECWCSVIDDIDAFRHGESTLCTYPCGGNVDQLCGGELAMNIYEK 1718
C G+ G+ + D CC CG CGG GCST G + CC + G++CA+SG APC+ G VP +P ++GC++D RM ++++S D MT E CWCG D GE + CD PC GN + +CGG MSVYE+A + +P+ GC++D R+ + + D MT E +C V C GS YYGTQY ECWC + D +GE +C PC G+V+++CGG AM++YE
Sbjct: 10 CDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCI-GDVEDDVPTETETM----------------DPS----YLGCYSDPADSRMFVQDISSDA-MTAE-------------------CWCGAEGADYDANGEGV---CDTPCGGNDDEICGGFYAMSVYENAKIDDPSYL---GCYSDPADSRMFVQDISSDAMTAEVSNRPGCFRRLLCGIASASHLNLGSCFSRLCFVMFYLVWLEACAGSAYYGTQYSVECWCGA-EGADYDANGEG-ICDIPCSGDVNEICGGFYAMSVYEN 283
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI) HSP 1 Score: 137 bits (346), Expect = 4.860e-34 Identity = 68/164 (41.46%), Postives = 89/164 (54.27%), Query Frame = 3 Query: 1227 MTTEMCEAICSEYEVFGTQFGVQCWCGGNHPDTATYGEPIMAACDMPCPGNPETMCGGRDTMSVYEHALTEPTGAHDHGCFADSFADRIMERVLIDDF-MTTEMCEVRCDGSRYYGTQYGTECWCSVIDDIDAFRHGESTLCTYPCGGNVDQLCGGELAMNIYE 1715
MTTE+CE C F TQ+G +CWCG D A +GE C C GN + CGG D +VY + + GC+ D R+ME L D MT EMCE C G+RY+G QYG+EC+C + +GES+ C Y C G+ +Q CGG AM++Y
Sbjct: 1 MTTELCELTCLGSTYFATQYGRECWCGSAGMDYALHGE--STDCTYGCAGNADQTCGGFDAANVYRYTNESTPTSSFVGCYQDESDARMMELALTDSSSMTKEMCEAECTGNRYFGMQYGSECFCGG-SSTNLLENGESSACDYECPGDSEQECGGFYAMSVYS 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9541.17264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9541.17264.1 >prot_H-paniculata_contig9541.17264.1 ID=prot_H-paniculata_contig9541.17264.1|Name=mRNA_H-paniculata_contig9541.17264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=491bp MKASLFLLATLPMIFADEDFKCSMGLRGADVQAGRNLQVDPMCSNGIVGIback to top mRNA from alignment at H-paniculata_contig9541:1492..8018+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9541.17264.1 ID=mRNA_H-paniculata_contig9541.17264.1|Name=mRNA_H-paniculata_contig9541.17264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6527bp|location=Sequence derived from alignment at H-paniculata_contig9541:1492..8018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9541:1492..8018+ >mRNA_H-paniculata_contig9541.17264.1 ID=mRNA_H-paniculata_contig9541.17264.1|Name=mRNA_H-paniculata_contig9541.17264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2946bp|location=Sequence derived from alignment at H-paniculata_contig9541:1492..8018+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |