mRNA_H-paniculata_contig9539.17260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE) HSP 1 Score: 216 bits (550), Expect = 3.320e-59 Identity = 120/267 (44.94%), Postives = 168/267 (62.92%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGP 1914 H+W TDETG T Q TK K+ITE GQKV G RS+SREN+TVV T++AAGA + P II+KGQ + A + V+ + PP ARL S +++++F R L G + P +LVLD HASHV +VV+LA +NI L+ +PSH H+ QPLDV +FG+FK+ IT ++ F ++G ++ K++M+ ++ W RSF+ + +SF GAGLW V+ +RA+ RL+GVGKRK R RP + DI K L +LGP Sbjct: 164 HLWNTDETGSTSQGTKTMKVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQA-------DWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITGAISDKHLADNLGP 423
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI) HSP 1 Score: 217 bits (552), Expect = 3.490e-57 Identity = 135/342 (39.47%), Postives = 196/342 (57.31%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGPIQCGS*NPQATCSPALGLARSSSVNS*RLKSA*RVHQSHMECWRSH----EGGLLT--SVLTKYRENASRKKEEE 2121 H+W TDETG T Q TK K I E GQKVVG RS+SRE +TVV T++AAGA + P II+KGQ + A + V+ + PP ARL S +++++F R L G + P +LVLD HASHV +V++LA +NI L+ +PSH H+ QPLDV +FG+FK+ IT ++ F ++G ++ K++M+ ++ W RSF+ Q +SF GAGLW V+ +RA+ RL+GVGKRK R RP + DI + K L +LGP + C G+ ++ + +K+ + Q + R EGG +T V+ KY E+ +K E E Sbjct: 164 HLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQA-------DWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKNLADNLGPRTVRELQQKGQC--VKGILINTVMLGAFVKA--KKKQKKLAITRKSQGLPEGGAITCDDVMHKYLEDERQKVEAE 494
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE) HSP 1 Score: 207 bits (527), Expect = 2.550e-55 Identity = 122/266 (45.86%), Postives = 158/266 (59.40%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 HVW TDE+G T Q T+ ++++ ERGQ VV RS+SREN T+V T+NAAGAV+ PTIIFKGQ + + + NG PP A C + S ++K F + LG D KP +LVLD HASHV L V++LA+S+NI L LPSH H+ QPLDVA FG FKK + + F ++G + K +M +I W SFT KASF GAGLW V+ +RAL RL KRK DRP L D+P+ + LE +G Sbjct: 178 HVWNTDESGGTVQGTQGQRVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADL-NG------PPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRLLRP-KRKVTETDRPPLEDVPIAVTNERLEELIG 435
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.010e-54 Identity = 137/353 (38.81%), Postives = 201/353 (56.94%), Query Frame = 1 Query: 1123 PTCGKHVWK--TD----ETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLGPIQCGS*NPQATCSPALGLARSSSVNS*RLKSA*RVHQSHMECWRSH----EGGLLT--SVLTKYRENASRKKEEE 2121 PTCG + + TD G TPQ TK K+I E GQKVVG RS+SR+N+TVV T++AAGA + P II+KGQ + A + V+ + PP ARL S +++++F R L G + P +LVLD HASHV +VV+LA +NI L+ +PSH H+ QPLDV +FG+FK IT ++ F ++G ++ K++M+ ++ W RSF+ Q +SF GAGLW V+ +RA+ RL+GVGKRK R RP + DI + K+L +LGP + C G+ ++ + +K+ + Q + R EGG++T V+ KY E+ +K E E Sbjct: 161 PTCGTQMRQEYTDLERAVPGSTPQGTKTMKVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQA-------DWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKDLADNLGPRTVRELQQKGQC--VKGILINTVMLGAFVKA--KKKQKKLAITRKSQGLPEGGVITCDDVMPKYLEDERQKVEAE 502
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.270e-54 Identity = 115/266 (43.23%), Postives = 159/266 (59.77%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 HV TDETG TPQ K K + GQKVV + R++SREN T+V T++A G+ PTIIFKGQ + + + PP AR TC S +LK+F + L G D KP IL+LD HASHV+++V++LAM +NI LF LPSH H+ QPLDV AFG FK+ +T ++ + + G + K ++ VI W +FT + ++SF GAGLW VNM+RA+ RL+G KR RP L D+P+ ++LE+ +G Sbjct: 162 HVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQP-------DWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIG 420
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JBS6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS6_9PHAE) HSP 1 Score: 202 bits (514), Expect = 5.390e-54 Identity = 120/264 (45.45%), Postives = 154/264 (58.33%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERS 1905 HV TDETG TPQ TK K E GQKVV + RS+S EN TVV T++A GA PTIIFKGQ + + + P AR TC S +LK+F + L G D KP LVLD HASHV+ +V++LAM +NI LF LPSH H+ QPLDV AFGTFKK +T + + +G + +K ++ VI W RS T+ + ASF GAGL V+M RAL RL+G KR+ RP L D+P+ ++LE + Sbjct: 158 HVHNTDETGPTPQGTKTMKAFAEAGQKVVESMRSNSLENTTVVTTISANGATWAPTIIFKGQRLQP-------DWFAERNGPKDARYTCTDSSFMQGDVFIKYLKDFHKQLDDRGVLDGKPHTLVLDGHASHVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQRSLTLERNNASFGGAGLRPVDMDRALTRLQGTAKREEGPTGRPPLEDVPIAMTHEQLEEA 414
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE) HSP 1 Score: 208 bits (530), Expect = 3.640e-53 Identity = 115/266 (43.23%), Postives = 159/266 (59.77%), Query Frame = 1 Query: 1138 HVWKTDETGVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 HV TDETG TPQ K K + GQKVV + R++SREN T+V T++A G+ PTIIFKGQ + + + PP AR TC S +LK+F + L G D KP IL+LD HASHV+++V++LAM +NI LF LPSH H+ QPLDV AFG FK+ +T ++ + + G + K ++ VI W +FT + ++SF GAGLW VNM+RA+ RL+G KR RP L D+P+ ++LE+ +G Sbjct: 403 HVHNTDETGTTPQGNKTMKAYCQAGQKVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQP-------DWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIG 661
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.580e-52 Identity = 120/258 (46.51%), Postives = 150/258 (58.14%), Query Frame = 1 Query: 1162 GVTPQYTKAKKIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 G T Q + +++ ERGQ VV RS+SREN T++ T+NAAGAV+ PTIIFKGQ + + + Q PP A TC + S ++ +F L D KP +LVLD HASHV+L+VVELA S+NI L LPSH H+ QPLDVA FG FKK +T + F HG + K +M VI Q W+ SFT KASF GAGLW V+ +RAL RL KRK R DRP L D+P+ LE LG Sbjct: 98 GGTIQGAQGQQVYAERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNG-------DWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKP-KRKERETDRPPLQDVPIAVSNDRLEELLG 347
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE) HSP 1 Score: 192 bits (487), Expect = 6.210e-51 Identity = 112/248 (45.16%), Postives = 145/248 (58.47%), Query Frame = 1 Query: 1192 KIITERGQKVVGTKRSSSRENITVVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 K E GQKVV + RS+SREN TVV T++A GA PTIIFKGQ + + + P AR TC S +LK+F + L G D KP ILVLD HASHV+ + ++LAM +NI LF LPSH H+ QPLDV AFGTFKK +T + + +G + +K ++ VI W S T + KASF GAGLW V+M RAL RL+G KRK RP L D+P+ ++LE ++G Sbjct: 2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQP-------DWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVPIAMTHEQLEEAIG 242
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE) HSP 1 Score: 194 bits (493), Expect = 2.570e-50 Identity = 115/257 (44.75%), Postives = 149/257 (57.98%), Query Frame = 1 Query: 1168 TPQYTKAKKIITERGQKVVGTKRSSSRENIT-VVATVNAAGAVMPPTIIFKGQPVHAA*LGTVDNGVRAQRTPPPARLTCRK*S--------SFLKEFDRHLGASGFKDRKPPILVLDHHASHVNLQVVELAMSMNIELF*LPSHPVHMNQPLDVAAFGTFKKAITSDVTTFGQQHGCKMLVKAEMVCVIEQPWARSFTVPQIKASFQGAGLWLVNMQRALDRLKGVGKRKSRLDDRPHLADIPMVTRQKELERSLG 1911 TPQ TK K E GQKVVG+ RS+SREN T VV T++A G PTIIFKG + A + + P AR TC S ++LK+F + G G D KP IL+LD H+SHV ++V LAM++ I L LPSH H+ QPLDV AFG FKK++T + +F G + +K +M VI W SFT K+SF GAGLW VN +RAL RLKG +K R +RP L D+ M ++LE+ +G Sbjct: 148 TPQGTKTTKAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQA-------DWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLKGTANKKERRAERPPLQDVTMAALNEQLEKDIG 397 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9539.17260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9539.17260.1 >prot_H-paniculata_contig9539.17260.1 ID=prot_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp MSGAQRLSSPLPQLHTVPDLQYHCLSLLPFCEFQEYPTCLPSMLRRTMYPback to top mRNA from alignment at H-paniculata_contig9539:3163..5802+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9539.17260.1 ID=mRNA_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2640bp|location=Sequence derived from alignment at H-paniculata_contig9539:3163..5802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9539:3163..5802+ >mRNA_H-paniculata_contig9539.17260.1 ID=mRNA_H-paniculata_contig9539.17260.1|Name=mRNA_H-paniculata_contig9539.17260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig9539:3163..5802+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |