mRNA_H-paniculata_contig9535.17259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 83.6 bits (205), Expect = 3.390e-16 Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 RR A F + +V+ ++L+TK+ +FK V+ LLY TW L H +L + + S + + T HS LER C +E+ ++KR ++AG+ + + DERLP +++ GEL G R G+P ++ + D + +P+ WE Sbjct: 131 RRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 286
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 83.6 bits (205), Expect = 8.060e-16 Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 RR A F + +V+ ++L+TK+ +FK V+ LLY TW L H +L + + S + + T HS LER C +E+ ++KR ++AG+ + + DERLP +++ GEL G R G+P ++ + D + +P+ WE Sbjct: 198 RRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 353
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 83.6 bits (205), Expect = 1.080e-15 Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 RR A F + +V+ ++L+TK+ +FK V+ LLY TW L H +L + + S + + T HS LER C +E+ ++KR ++AG+ + + DERLP +++ GEL G R G+P ++ + D + +P+ WE Sbjct: 484 RRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWE 639
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: UPI00200FE13E (uncharacterized protein LOC125233589 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200FE13E) HSP 1 Score: 75.1 bits (183), Expect = 3.030e-13 Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 1 Query: 31 FNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 F Q +V++ K++L TK+ ++K+ VL +LLY TW RL +H LG+ R TN + L+ GC I AT+++R R+ G+ + + +RLP +M E+ R G+P + D+ GI + WE Sbjct: 45 FGKLQARVWNNSKLKLSTKILVYKSCVLSILLYASETWTTYSRQERRLNAFHMRCLRTILGVTWRDHITNERV-----LDLAGCYSITATLKQRRLRWLGHVLRMDPDRLPRAVMLSEIAYAKRPIGRPLLRFKDSCKRDMLSFGIDPSTWE 191
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A2W1BQA3_HELAM (C2H2-type domain-containing protein n=3 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BQA3_HELAM) HSP 1 Score: 73.6 bits (179), Expect = 1.110e-12 Identity = 45/152 (29.61%), Postives = 69/152 (45.39%), Query Frame = 1 Query: 31 FNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 F +V+ K+ + TK+ ++KT VL LLY TW RL +H LG+ + TN A L +T C I AT+++R R+ G+ + ERLP +M G++ R G+P + C D++ I WE Sbjct: 52 FGKLSTRVWRNNKLTITTKILVYKTCVLNTLLYGSETWTTYSKQERRLNAFHMRCLRVILGVTWKDRVTNE-----AVLSKTNCNSILATLKQRRLRWLGHVHRMDTERLPREVMLGQIADAKRRVGRPNLRFKDCCKRDMDSFNINANSWE 198
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA) HSP 1 Score: 71.6 bits (174), Expect = 3.990e-12 Identity = 44/156 (28.21%), Postives = 74/156 (47.44%), Query Frame = 1 Query: 19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 A F +R V++ + L TKL++++ V+ LLY C TW + H +L +H +C L R +H + L R + +EK R+AG+ + D+R+P V++ GEL G R G+P + + + + IP+ WE Sbjct: 18 ASSAFGRLRRTVWERRGIILSTKLKVYQAVVVTTLLYACETWTVYSRHARQLNHFH-TTCLRKL---MRIRWQDH-IPDTEVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWE 168
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 72.4 bits (176), Expect = 7.280e-12 Identity = 45/141 (31.91%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQ 426 RR A F + +V+ ++L+TK+ +FK V+ LLY TW L H +L + + S + + + T HS LER C IE+ ++KR ++AG+ + + DERLP +++ GEL G R G+P ++ Sbjct: 214 RRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKLEVFQQRSLRSIMRV-NWEEKTPHS----EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKR 349
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 70.5 bits (171), Expect = 4.030e-11 Identity = 40/156 (25.64%), Postives = 73/156 (46.79%), Query Frame = 1 Query: 19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 A+ F ++ V+D +R TK+++++ VL LL+ C TW + H +L +H S LGI + + + RA L + ++ + R+AG+ ++D RLP +++ GEL G R +G ++ + + I WE Sbjct: 741 ANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKVPDTEVLVRADLPSIFTILAQSQL-----RWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWE 891
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: A0A7D9IPZ0_PARCT (Reverse transcriptase domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IPZ0_PARCT) HSP 1 Score: 68.9 bits (167), Expect = 1.350e-10 Identity = 42/133 (31.58%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 4 RRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIR 402 RR A F + ++++ ++L+TK+ +FK V+ LLY TW L H +L + + S + + T HS LER C IE+ ++KR ++AG+ + + DERLP +++ GEL G R Sbjct: 675 RRTAKASSSFGRLKDRLWNSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKLEAFQQRSLRSIMRVKWEE-KTPHS----EVLEREKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNR 802
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Match: UPI00200C769B (uncharacterized protein LOC125238175 n=1 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C769B) HSP 1 Score: 63.9 bits (154), Expect = 5.950e-9 Identity = 43/156 (27.56%), Postives = 68/156 (43.59%), Query Frame = 1 Query: 19 AHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLLDSHYARLREYHRVSCCDALGIYSRSGPTNHSLSYRAALERTGCKIIEATVEKRPHRFAGNDMHIRDERLPDVMMTGELDGGIRGRGQPARQRPQCVVDDVNDVGIPITKWE 486 A F +V+ K+ + TK+ +++T VL +LLY T RL YH LG+ + TN A L +T C I A +++R R+ G+ + ERLP ++ GE+ R G+P + D+ I + WE Sbjct: 151 AAATFGKLASRVWKNNKLTIATKVLVYQTCVLSILLYASETLTTYAKQERRLNAYHMRCLRYILGVTWKDRMTNE-----AVLLKTNCSSITAILKQRRLRWLGHVYRMGPERLPREVLLGEIADAKRPVGRPMLRFKDSCKRDMQSFSINLDSWE 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9535.17259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9535.17259.1 >prot_H-paniculata_contig9535.17259.1 ID=prot_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp MRRGRTAHLCFNTHQRQVYDCPKVRLDTKLRIFKTNVLEVLLYTCSTWMLback to top mRNA from alignment at H-paniculata_contig9535:7860..8345+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9535.17259.1 ID=mRNA_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig9535:7860..8345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9535:7860..8345+ >mRNA_H-paniculata_contig9535.17259.1 ID=mRNA_H-paniculata_contig9535.17259.1|Name=mRNA_H-paniculata_contig9535.17259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig9535:7860..8345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |