mRNA_H-paniculata_contig9532.17258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: D8LKB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKB5_ECTSI) HSP 1 Score: 455 bits (1171), Expect = 3.040e-136 Identity = 398/1119 (35.57%), Postives = 536/1119 (47.90%), Query Frame = 2 Query: 20 ELWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRESSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIGYK--ECITMSDPDILDAFPDINLFPRDPTAPSSFEGACDWLAALTKR-------------IRVLAVGHREGIKGMAGRTVPTPHCCIAIFQAKC--KPATTYVMQELLSYEGVSLRRGSVIAF----SHHRVGSGAGATENSEKDGEDSLLAGL-------LEGPLPP----NTARANQTRAFLTGDRWLRRAMRTTKAQRDQVRPKPAK-TSSRREKQSAGVSMETMTEINPGALTQFPRKLSSNRKDTE----HIQRRQRPSAVTG-GTSTHGAAATTANPVGSRSKERATASRTAXXXXXXXXXXXXXXXXXHRRVSASDCGAKG---KIA------AGGGFRVATLARHSSGRSAAKDPRMASLLGMAPDSLSGPMGVLSFLHAVDLCMVQVACKTLAIAVESDLLWRSVYMRLSQTLRDRTESIVTAAAVGATREATSYKER----------FVIATIAMWKSRLSSTKRKIAHARRRRGFIYDLRPSVDAVHAGVTVRLSGKSAEIVDSIGTRTEDWVSCWNLLSGPSIR-NGIRMFSLSSSVKVALPPAM-TASQCANIHVALSAP--DLCLVGATLFKTADNPLLFSQARFLVSSRDDSVALYELVSANSFHDRHYRHDDNSDEHGGTVIPFPSLPPVPPPLPCGCALLGLLNDPQQKKEASKQQAGADHGVGFLSIHFPHQLLLDTATRNPTAPKNTTDNITEKGPWRRRSQTYGDDSAAGDYDILKNLSAALGLRTIGVAIWETAAVGVTARLSPRRQHSSTRRHEGNESVLVLPHSQSHSSQNQSVVSVELVSPGATSTEGWAMGAAAGGIS----RLNAGPRLPFLTSGGLSGVFEDVLLADFHLCDEHGDSLWAFTSPIVFDKVNGDNKSIRDENTTTSLAANEDAGGPAPGTDD-------VIDMSYSEVRRERRVGVVEEPGVGRVIVELALISSDSAGDGEAHQQQDRAAASRGASCRRSSPPLPGGNKAEWSVRLARVELEFGFYNAWY 3160
E+WHVRH +R DEV G E+ ++ S + G ++D LT YGHVQA +AG+ L L FN+ ++ FD V+ SPL+RAVQTA CIS LG LPLQVV GL SCTAA+ IGY E ++D DI++AFP + + PRDP AP+SF GA WLAA RVLAVGHREG + MAGR VPTPHCCI IF+ K TY + +LLS G SL+ + S E+ + GE LA ++GP P + A+ + R TG R Q DQ R ++ T R + A S+ + I ++ TG GT+ XXXXXXXXXXXXXXX VS A G +A AG GFRVA + R S R+ A LG+ D L G GVLSFL +LC Q C ++A A ++ LW +Y RL + L++R++ ++ A E+ Y E+ F IA + +K+A +RR G IY+LR SV A+ ++V ++GKS +V + G +T WVS N++S PS+ NG+R FSLSSS K+ +P ++ T ++ VALS P + L+ + D + S AR L S D+++ LY++ ++ H T PS P + GCALLG+L P + D GV FL++HFPH+LLLD AT P + T+ G R + GDDSA + L+ + ALGLRT GV +WE A+ V R+ P R + L S +VV ++++ PGA + + GAAA +S L++GP +P+ T GGLSG DVLLADF L D G S+WAFT PIVF A + P PG IDM+ E+R ERR G+V E GVGRVIVELAL+ S + D + D +S+ SC P G+ W VR ARVEL+ GF N W+
Sbjct: 5 EVWHVRHGERCDEVRGEERRAWEKSPRCKAGGWFDPFLTSYGHVQACRAGQHLKGLPFNRQQ-KQPGSFDVVFTSPLVRAVQTAVCISQSLGNLPLQVVPGLCSCTAALRHIGYSSAEATLLTDEDIIEAFPGVTIVPRDPLAPTSFGGAASWLAAKACEKQGAGSDGDGECFSRVLAVGHREGTRAMAGRKVPTPHCCIGIFKVNAPEKKLCTYEIHDLLSNTGKSLKPKGESPYARPTSTMMEEESRPRNEHEDGGGEVEALAARVAALTVNMKGPKPRAKNHSGAKEDAQRRASTG-RGANSRENXXXXQNDQDRRSSSRPTGLMRRLRGASKSLLSAAXXXXXXXXXXXXXXXXXXXXXXXXXXEISTQKSTRRSTGKGTAVGVVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKGDLVSGGPVSAAGGGKNVAPREGSLAGRGFRVA-VHRSSRRRAVGGGSTFAGFLGVPVDVLCGSSGVLSFLSPTELCTAQAICTSIAPATMNEYLWGELYARLPEGLKNRSKGVLPAGG-----ESEIYPEKAAAHVHPKVLFAIAVSIASSMHAAKIAKKVATVKRRVGVIYNLRVSVVAMRGDISVTINGKSVSVVQTTGAKTGAWVSRPNIVSEPSVNHNGVRTFSLSSSAKIDVPTSLETVKDLRSMCVALSWPGKEATLLPRIVVARIDERPVLSPARALGKSVDNAIVLYDITGSSXXX---XXXXXXXXXHTCTTRTTPSSP-----VRRGCALLGVL--PSGSHGGQRDSGTDDGGVAFLTVHFPHELLLDVATHGP---RRATERNVPSGGSSTRGRYLGDDSAGPGHG-LEGFATALGLRTAGVPLWEKASTAVDGRVCPPRNVAPQ-----------LQQSPVGDDPGAAVVRIDILHPGANNAASFGGGAAA--VSDPDRTLSSGPGVPYYTPGGLSGTVADVLLADFTLYDPDGASIWAFTLPIVF------------------AACPAEGSAPNPGGSSXXXXXXXTIDMARRELREERRRGIVTESGVGRVIVELALVESPTERD-----ENDVVGSSQKRSC-------PAGHM--WVVRSARVELDLGFVNTWF 1056
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: D8LKB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB9_ECTSI) HSP 1 Score: 214 bits (546), Expect = 7.630e-58 Identity = 127/285 (44.56%), Postives = 164/285 (57.54%), Query Frame = 2 Query: 20 ELWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRESSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIGYK--ECITMSDPDILDAFPDINLFPRDPTAPSSFEGACDWLAALTKR-------------IRVLAVGHREGIKGMAGRTVPTPHCCIAIFQAKCKPAT--TYVMQELLSYEGVSLRRGSVIAFSHHRVGSGA--GATENSEKDGEDSL---------LAGLLEGP--LPPNT 784
E+WHVRH +R DEV G E+ ++ S EG ++D LTR GHVQA +AG L L FN+ ++ FD VY SPLLRAVQTA CIS LG LPLQVV GL SCTAA+ IGY E M+D DI++AFP + + P DP AP+SFEGA +WLAA RVLAVGHREG K MA + VPTP+CCI IF+ K + Y + +LL G SL+ A++ +V + N ++DG+ + L+ ++GP PP T
Sbjct: 32 EVWHVRHGERCDEVWGEEQQAWERSPRCNEGGWFDPFLTRDGHVQACRAGEHLKGLPFNRQQ-KQPGSFDIVYTSPLLRAVQTAVCISQSLGNLPLQVVPGLCSCTAALSEIGYSSAEATLMTDKDIIEAFPGVTIVPTDPLAPTSFEGAAEWLAAKACEKKGAGSDGDGECFSRVLAVGHREGTKEMARKNVPTPYCCIGIFKVKAEEENWYPYELHDLLINTGESLKSSGESAYARPKVATSEEENRPRNDDEDGDGEVEALAARIAALSDNMKGPKICPPGT 315
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: A0A6H5KYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV6_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.630e-33 Identity = 109/290 (37.59%), Postives = 142/290 (48.97%), Query Frame = 2 Query: 20 ELWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFN-------QPSVRE-SSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIG---YKECITMSDPDILDAFPDINLFPRDPTAPSSFEGACDWLAALTKRIRVLAVGHREGIKGMAGRTVPTPHCCIAIFQAKCKP------ATTYVMQELLSYEGVSLRRGSVIAFSHHRVGSGAGAT----ENSEKDGEDSLLAGLLEGPLPPNTARANQTRAFLTGDR 826
E+WHVRH + P + + +D LT GHVQAS AG +LS+L FN QP ++ GFD VY SPL RAVQTA C+S LGGLPL+VV GL S TAA+VR G E M+D DI +AFP + + PRDP AP++F+GA WLAA V + +G VPTPHCCI +F+ Y + +LL+ G SL S+ R A AT +N + G+D A L + T ++ DR
Sbjct: 151 EVWHVRHGK-------PGRKTLE---------IFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRQPQQQQPGEGFDVVYTSPLARAVQTAVCLSWALGGLPLEVVPGLCSSTAALVRRGGFPSVEAELMTDGDIAEAFPGVVVRPRDPLAPTTFDGALAWLAAKACEGTTAMVANSSVGEGKE-EVVPTPHCCIGVFRVAEAGEGGGGGTWAYELHDLLASTGESLGPWGGEPSSYARPLRTAAATPEDGKNGSRSGDDGAAAEALAARVMALTVHTEGSKRGAKSDR 423
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: A0A7S0WRR4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WRR4_9CHLO) HSP 1 Score: 105 bits (263), Expect = 4.970e-21 Identity = 72/202 (35.64%), Postives = 109/202 (53.96%), Query Frame = 2 Query: 23 LWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRESSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIGYK--ECITMSDPDILDAFPDINLFPRDPTAPSSFEGACDWLAA--------LTKRIR---VLAVGHREGIKGMAGRTVPTPHCCIAIFQA 589
+W VRH +R DE +G + K+ + R +D PLT G QA+ AG+ LS L + FD+V+ SP +R + TA+ ++ QLG + VV GL +C AA V++G + E +T+ + L I++ + APS+F GAC W+AA + +R VL V HREGI+ + GR + P+C +A F A
Sbjct: 9 MWVVRHGERLDETAGVNEWLRKTPRS----RRFDPPLTEEGGRQATVAGKTLSKLGLS---------FDKVFVSPTMRTLSTAWHVAEQLGINEMVVVPGLCACAAAAVQLGLERLELLTIEEMKALCPRITISIAKK---APSTFMGACSWVAAQGHQAAQSASSSLRGSPVLVVSHREGIRDLMGRNLRLPYCAVANFTA 194
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: D8LIR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIR2_ECTSI) HSP 1 Score: 101 bits (251), Expect = 6.550e-18 Identity = 65/144 (45.14%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 20 ELWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRE---------SSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIG---YKECITMSDPDILDAFPDI 415
E+WHVRH + P + + +D LT GHVQAS AG +LS+L FN+ R GFD VY SPL RAVQTA C+S LG LPL+VV GL SCTAA+VR G E M+D DI +AFP +
Sbjct: 155 EVWHVRHGK-------PGRKTLE---------IFDPALTGEGHVQASAAGLYLSTLPFNRGGRRRRRQPQQQLPGEGFDVVYTSPLARAVQTAVCLSRALGDLPLEVVPGLCSCTAALVRRGGFPSVEAELMTDGDIAEAFPGV 282
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: A0A7S2GED0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GED0_9EUKA) HSP 1 Score: 84.3 bits (207), Expect = 6.550e-13 Identity = 79/243 (32.51%), Postives = 115/243 (47.33%), Query Frame = 2 Query: 20 ELWHVRHAQRADEVSGPEKANFKSSTAY----REGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRESSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSCTAAMVRIGYK-----------ECITMSDPDILDAFPDINLFPRDPTAPSSFE-GACDWLAALTK-RIRVLAVGHREGIKGMAGRTVP---------TPHCCIAIFQAKCKPATTYVMQELLSYEGVSLRRGSVI 670
E++ VRH +R DEV G E+ + +S +G +D PLT +G QA+ A R L +L + + FD V+CSPL+R VQTA + G +P+ +V GLG C AA+ E + + P PDI + P FE G +L + R RVL + HRE I+ +A R TP+ CI +F C TT ++E Y G+ +RRG+V+
Sbjct: 282 EVYIVRHGERVDEVDGEERRRWITSLEQCADGNDG--FDPPLTIHGVAQAADAARSLRAL------LPQPKPFDVVFCSPLVRCVQTAEHFAYTFG-IPITLVPGLGECCAALHHRSRSAKRRWPLLQPLEQLRVLCPRASFTVPDIA------SLPERFEDGPLTCAGSLAQGRRRVLLISHRESIRSLAKRQQSKDRKSDDRNTPYACIGLFH--CYQPTT--VEERWRYYGL-VRRGAVM 504
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Match: A0A1E5QWH3_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QWH3_9CHRO) HSP 1 Score: 57.0 bits (136), Expect = 3.810e-5 Identity = 50/180 (27.78%), Postives = 77/180 (42.78%), Query Frame = 2 Query: 23 LWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKAGRFLSSLTFNQPSVRESSGFDRVYCSPLLRAVQTAYCISLQLGGLPLQVVHGLGSC-------TAAMVRIGYKECITMSDPDILDAFPDINLFPRDP-TAPSSFEGACDWLAALTKRIRVLAVGHREGIKGM 538
+W VRH R D V PE N+ + YD PL+ G +QA + L E ++CSP LRA++TAY I++ L LP+++ GLG T + + Y + + D+++ ++P P T ++ LT L VGH I+GM
Sbjct: 1 MWIVRHGNRHDFVY-PEWFNYAE-------KKYDPPLSEDGIIQAKAVAKRL-----------EKEPIKHIFCSPFLRAIETAYPIAIALN-LPIKIESGLGEWHNNDWMETKPLTQ--YPDNLEKKYLDVINLDYQPQIYPPYPETLEEIYQRTAQTTKILTNYHNPLIVGHSVAIQGM 158 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9532.17258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9532.17258.1 >prot_H-paniculata_contig9532.17258.1 ID=prot_H-paniculata_contig9532.17258.1|Name=mRNA_H-paniculata_contig9532.17258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1052bp MVELWHVRHAQRADEVSGPEKANFKSSTAYREGRYYDTPLTRYGHVQASKback to top mRNA from alignment at H-paniculata_contig9532:1856..8299- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9532.17258.1 ID=mRNA_H-paniculata_contig9532.17258.1|Name=mRNA_H-paniculata_contig9532.17258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6444bp|location=Sequence derived from alignment at H-paniculata_contig9532:1856..8299- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9532:1856..8299- >mRNA_H-paniculata_contig9532.17258.1 ID=mRNA_H-paniculata_contig9532.17258.1|Name=mRNA_H-paniculata_contig9532.17258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6312bp|location=Sequence derived from alignment at H-paniculata_contig9532:1856..8299- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |