mRNA_H-paniculata_contig9531.17257.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: D8LN14_ECTSI (CAF1C_H4-bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN14_ECTSI) HSP 1 Score: 246 bits (627), Expect = 1.040e-71 Identity = 158/238 (66.39%), Postives = 169/238 (71.01%), Query Frame = 3 Query: 717 VQEGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTE---LKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPATTV 1421 ++EGFA+DWSPT EG L TGD N V++TR E W TDPVPFVGHV SV +TVFAS SADKT+AVWDLRKKNG MLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWH+ SVEADDEA LKDLPPQLLFIHQGQ DIKELHFHPQIPG+I+STAADGFN+FKPATTV Sbjct: 308 MEEGFALDWSPTEEGRLATGDCGNSVHVTRTVEGGWVTDPVPFVGHVASVXXXXXXXXXTTVFASASADKTVAVWDLRKKNGAMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHKAPITSIEWHPTDESMLAVSGADNQLTVWDLSVEADDEAXXXXXXXXXXXXXGGLKDLPPQLLFIHQGQTDIKELHFHPQIPGVIMSTAADGFNIFKPATTV 545
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A7S4D9K6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9K6_HETAK) HSP 1 Score: 195 bits (496), Expect = 9.980e-54 Identity = 154/238 (64.71%), Postives = 176/238 (73.95%), Query Frame = 3 Query: 720 QEGFAMDWSPTTEGNLVTGDGANCVYLTRPT----ESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPATTV 1421 QEG+A+DWSP+ G L+TGD +Y P + WA D VPF GH GSVEDLQWSPTE+TVF S D+T+ VWDLR+K G+MLS +AH D XXXXXXXXXXXXXXXXXXXXXXXXXX FG EP+A F+WH XXXXXXXXXXXXXXXXXXXXXXXX SVEADD + G + D+P QLLF+HQGQ DIKELHFH Q+PG+I+STA DGFNVFKPAT + Sbjct: 198 QEGWALDWSPSAAGRLLTGDCGGFIYHWEPAGGGGAAGWAVDKVPFTGHQGSVEDLQWSPTEATVFMSAGVDRTVRVWDLRQKGGSMLSCEAHAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGKSEPIANFKWHTAPXXXXXXXXXXXXXXXXXXXXXXXXVWDLSVEADDAEGRARPPGAD-----DVPAQLLFVHQGQVDIKELHFHQQLPGVIMSTALDGFNVFKPATQI 430
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A024UF95_9STRA (CAF1C_H4-bd domain-containing protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024UF95_9STRA) HSP 1 Score: 196 bits (498), Expect = 2.000e-53 Identity = 131/230 (56.96%), Postives = 152/230 (66.09%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP T G+L+TGD + +Y SW D VPF GH SVED+QWSPTE+TVFAS S+D+T+ +WD+R K +MLS++AH++ XXXXXXXXXXXXXXXXXXXXXXXXX F S PVA FR+H SVE D EAA +T T D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA Sbjct: 265 EGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWVVDKVPFTGHTSSVEDIQWSPTEATVFASCSSDRTVRIWDIRTKARSMLSVEAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQSDSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDAEAANAT------TAKLDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 488
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A6G0XVI8_9STRA (CAF1C_H4-bd domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0XVI8_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.450e-52 Identity = 131/230 (56.96%), Postives = 154/230 (66.96%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP T G+L+TGD + +Y SWA D VPF GH SVED+QWSPTE++VFAS SADKT+ +WD+R K +ML + AH++ XXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D EAA + N+++L D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA Sbjct: 264 EGFAMDWSPVTAGSLLTGDCSKYIYHWVNNGGSWAVDKVPFTGHTASVEDIQWSPTEASVFASCSADKTVRIWDIRTKARSMLDVVAHDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKFQADSPVAHFRYHTAPVTSIEWHPTDESMLAVSGADNQISIWDMSVEEDTEAAAA-----NTSKL-DVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 487
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A0P1AE81_PLAHL (Glutamate-rich wd repeat-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE81_PLAHL) HSP 1 Score: 193 bits (490), Expect = 2.640e-52 Identity = 127/230 (55.22%), Postives = 155/230 (67.39%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP G LVTGD + +YL ++ W+ D VPFV H SVEDLQWSPTE++VFAS S+D+++ +WD+R+K G+ML + AH++ XXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D EAA + G ++ +L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DG+NVFKPA Sbjct: 256 EGFAMDWSPVEAGRLVTGDCSKFIYLWASSDGGWSIDKVPFVRHKSSVEDLQWSPTEASVFASCSSDRSVRIWDVRRKAGSMLDITAHDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAVTVQGEKDNRKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGYNVFKPA 484
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A067CUG9_SAPPC (CAF1C_H4-bd domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CUG9_SAPPC) HSP 1 Score: 189 bits (479), Expect = 1.040e-50 Identity = 128/233 (54.94%), Postives = 149/233 (63.95%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGS---GEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP T G+L+TGD + +Y +SW D +PF GH SVEDLQWSP E +VFAS SADKT+ +WD+R K +M+ + AH++D XXXXXXXXXXXXXXXXXXXXXXXX FGS EP+A FR+H SVE D E S+E D+PPQLLFIHQGQ DIKELHFHPQ PGL++STAADGFNVFKPA Sbjct: 260 EGFAMDWSPHTAGSLLTGDCSKYIYHWVNNGASWVVDKIPFTGHKASVEDLQWSPLEGSVFASCSADKTVRIWDIRTKTRSMIEVNAHDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXCRKFGSPAKDEPIAHFRYHTAPVTSIEWHPSDESMLAVSGADNQISIWDMSVEEDTEQH-------PSSEKLDVPPQLLFIHQGQTDIKELHFHPQCPGLLVSTAADGFNVFKPA 485
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A484E1J0_BRELC (CAF1C_H4-bd domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1J0_BRELC) HSP 1 Score: 186 bits (472), Expect = 9.940e-50 Identity = 128/230 (55.65%), Postives = 151/230 (65.65%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWS G LVTGD + +Y+ +E ++ D VPF GH SVEDLQWSPTE++VFAS S+D+T+ +WD+R+K G+ML + AH+ XXXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D EAA T+L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DGFNVFKPA Sbjct: 254 EGFAMDWSSVQTGRLVTGDCSKFIYVWSNSEGAFNVDKVPFTGHKSSVEDLQWSPTEASVFASCSSDQTVRIWDIRRKAGSMLDVAAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFKADHPVAHFRYHTAPVTSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAKPVQSVDGETKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLISTAGDGFNVFKPA 482
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A8J4WG55_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4WG55_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.890e-49 Identity = 129/230 (56.09%), Postives = 148/230 (64.35%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP G LVTGD + +YL +E +W D VPF GH SVEDLQWSPTE++VFAS S+D+T+ +WD R+K G+ML + A XXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D EAA G +L DLPPQLLFIHQGQ DIKELHFHPQ PG+++STA DGFNVFKPA Sbjct: 512 EGFAMDWSPVQAGRLVTGDCSKFIYLWANSEGAWNVDKVPFTGHKSSVEDLQWSPTETSVFASCSSDRTVRIWDTRRKAGSMLDVTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKADNPVAHFRYHTAPVTSIEWHPTDESVLAVAGADNQISVWDMSVEEDAEAAVPVAGENGEAKL-DLPPQLLFIHQGQTDIKELHFHPQCPGVLMSTAGDGFNVFKPA 740
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A024GTE5_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GTE5_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.970e-49 Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 3 Query: 720 QEGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 +EGFAMDWS ++G+L+TGD + +Y P ES+W D VPF GH S+EDLQWSP E+TVFASGSADKT+ +WD R+K G+M+++ XXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D +A+ + ++PPQLLFIHQGQKDIKELHFHPQ PG+++STA DGFNVFKPA Sbjct: 253 EEGFAMDWSLVSKGHLLTGDCSKFIYRWLPQESAWVIDKVPFSGHQSSIEDLQWSPNEATVFASGSADKTIRIWDTRRKAGSMINVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKAETPVAHFRYHTAPITSLEWHPCDESVIAVSGADNQISIWDLSVEEDVDASDFINDADSKGVQCEVPPQLLFIHQGQKDIKELHFHPQCPGVLVSTAGDGFNVFKPA 483
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Match: A0A5D6XZ36_9STRA (CAF1C_H4-bd domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZ36_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.450e-49 Identity = 129/230 (56.09%), Postives = 147/230 (63.91%), Query Frame = 3 Query: 723 EGFAMDWSPTTEGNLVTGDGANCVYLTRPTESSWATDPVPFVGHVGSVEDLQWSPTESTVFASGSADKTLAVWDLRKKNGTMLSLKAHEEDVNVXXXXXXXXXXXXXXXXXXXXXXXXXXAFGSGEPVAQFRWHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVEADDEAAGSTGGGVNSTELKDLPPQLLFIHQGQKDIKELHFHPQIPGLILSTAADGFNVFKPA 1412 EGFAMDWSP G LVTGD + +Y ES+W+ D VPF GH SVEDLQWSPTE+TVFAS SAD+T+ +WD R+K G+ML + AHE+ XXXXXXXXXXXXXXXXXXXXXXXXX F + PVA FR+H SVE D EAA N DLPPQLLFIHQGQ DIKELHFH Q PG+++STA+DGFNV PA Sbjct: 262 EGFAMDWSPVQAGKLVTGDCSKFIYAWSNAESAWSVDKVPFTGHKASVEDLQWSPTEATVFASCSADRTVRIWDTRRKAGSMLDVVAHEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFKANSPVAHFRYHTAPITSIEWHPTDESVLAVSGADNQISVWDMSVEEDAEAAAEVHDPENPK--VDLPPQLLFIHQGQTDIKELHFHSQCPGVLVSTASDGFNVMAPA 489 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9531.17257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9531.17257.1 >prot_H-paniculata_contig9531.17257.1 ID=prot_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp MVLCSKQVTTLVRTVCLLCVFHISMLLFCRQYLHEYIFDVQEGFAMDWSPback to top mRNA from alignment at H-paniculata_contig9531:6590..9207- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9531.17257.1 ID=mRNA_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2618bp|location=Sequence derived from alignment at H-paniculata_contig9531:6590..9207- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9531:6590..9207- >mRNA_H-paniculata_contig9531.17257.1 ID=mRNA_H-paniculata_contig9531.17257.1|Name=mRNA_H-paniculata_contig9531.17257.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig9531:6590..9207- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |