mRNA_H-paniculata_contig9526.17252.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.830e-34 Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 1 Query: 1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM--LLSSEAGVTKAESTAVAQAA-----GEDLAIKYLEFCVNEL 276
+APFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRR+AAM L +S TA A+ GEDLAIKYLEFCVN+L
Sbjct: 857 KAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRKAAMVRLSASPPAAVSVSPTAEGNASLAVGEGEDLAIKYLEFCVNDL 955
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: D8LI29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.720e-33 Identity = 73/102 (71.57%), Postives = 78/102 (76.47%), Query Frame = 1 Query: 1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM--LLSSEAGVTKAESTAVAQA--------AGEDLAIKYLEFCVNEL 276
+APFDKVEPLVYKYSASLMAADPAGTI TWMSKPQLKPTKLIPALVRYSQRR+AAM L +S TA A+ GEDLAIKYLEFCVN+L
Sbjct: 467 KAPFDKVEPLVYKYSASLMAADPAGTIGTWMSKPQLKPTKLIPALVRYSQRRKAAMERLSASPPAAVSVSPTAAAEGNASLAAAGEGEDLAIKYLEFCVNDL 568
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A836CAW5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 2.380e-16 Identity = 49/92 (53.26%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 1 QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAMLLSSEAGVTKAESTAVAQAAGEDLAIKYLEFCVNEL 276
+AP +KVE LVY+YSA LM AD AGT+ WM KP L+ TKL+PALVRYS+ R AA AE A G D A+ YLE+CVN L
Sbjct: 713 RAPLEKVEGLVYRYSAVLMDADAAGTVSMWMGKPGLRATKLMPALVRYSRHRAAA-----------AEPRA-----GPDWAVTYLEYCVNTL 788
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A7S2BML3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BML3_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.660e-9 Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1 Query: 4 APFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAM 168
APF++V L YK+S++ M P T+ W +KP L PTKLIPA VRY+ R AM
Sbjct: 98 APFEQVSGLFYKFSSAFMETVPERTVHVWKTKPDLSPTKLIPAFVRYNHLRATAM 152
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Match: A0A4D8ZSD8_SALSN (Pep3_Vps18 domain-containing protein n=6 Tax=Salvia TaxID=21880 RepID=A0A4D8ZSD8_SALSN) HSP 1 Score: 52.0 bits (123), Expect = 1.180e-5 Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 1 Query: 28 LVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQRRRAAMLLSSEAGVTKAESTAVAQAAGEDLAIKYLEFCVNEL 276
L YK++ L+ D T+E+WM+K L P KLIPA++RYS A L+ T IKYLE+CV+ L
Sbjct: 562 LQYKFAPDLIMLDAYETVESWMTKKDLNPRKLIPAMMRYSSEPHAKNSLTGNWNETHE-------------VIKYLEYCVHRL 631 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9526.17252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9526.17252.1 >prot_H-paniculata_contig9526.17252.1 ID=prot_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp QAPFDKVEPLVYKYSASLMAADPAGTIETWMSKPQLKPTKLIPALVRYSQback to top mRNA from alignment at H-paniculata_contig9526:858..1643+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9526.17252.1 ID=mRNA_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=786bp|location=Sequence derived from alignment at H-paniculata_contig9526:858..1643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9526:858..1643+ >mRNA_H-paniculata_contig9526.17252.1 ID=mRNA_H-paniculata_contig9526.17252.1|Name=mRNA_H-paniculata_contig9526.17252.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig9526:858..1643+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |