mRNA_H-paniculata_contig9516.17248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: D7G8T6_ECTSI (UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T6_ECTSI) HSP 1 Score: 400 bits (1029), Expect = 8.030e-129 Identity = 194/218 (88.99%), Postives = 203/218 (93.12%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRA 1874 T +VYGDAQESPQTESYWGNVNC GVRACYDEGKRVAETL FDFHRQHKI VRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFC+VDDLI+GLVRLMNN+TEIGPMNIGNP EFTIKQLAEMT+RLT+S SKI++KPLPQDDPKQRRP+I FAK ALDWEP V LEEGL KTIEYF LDMRNFKKPTTHDAHKNSE E KRA Sbjct: 42 TSEVYGDAQESPQTESYWGNVNCHGVRACYDEGKRVAETLFFDFHRQHKIEVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCFVDDLIEGLVRLMNNDTEIGPMNIGNPTEFTIKQLAEMTVRLTKSPSKIIYKPLPQDDPKQRRPDISFAKSALDWEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRA 259
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7R9YP38_DIALT (UDP-glucuronate decarboxylase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YP38_DIALT) HSP 1 Score: 333 bits (854), Expect = 7.060e-102 Identity = 156/224 (69.64%), Postives = 188/224 (83.93%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRAESRATA 1892 T +VYGD +PQ ESYWG+VNCTGVR+CYDEGKR AETLCFD+HRQ+++ VRV RIFNT+GPGMHPYDGRVVSNFI+QAL+G+DITIYGDG QTRSFC+VDDL+DG+VR MN + IGP+N+GNP EFTIKQLAE TI+LT S SK++ +PLP DDPKQRRP+I A++ L WEP V L+EGL+KTI+YF ++DMR FKKPT HDAH NS + K A+ R A Sbjct: 137 TSEVYGDPNITPQPESYWGHVNCTGVRSCYDEGKRCAETLCFDYHRQNQVDVRVIRIFNTYGPGMHPYDGRVVSNFIVQALNGQDITIYGDGSQTRSFCFVDDLVDGIVRFMNQDECIGPVNLGNPHEFTIKQLAERTIQLTGSKSKLINEPLPHDDPKQRRPDITLARELLKWEPKVQLDEGLQKTIDYFAHVDMRTFKKPTQHDAHTNSRVDEKDAKKRKVA 360
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S0EJQ0_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EJQ0_9EUKA) HSP 1 Score: 319 bits (817), Expect = 1.530e-96 Identity = 154/258 (59.69%), Postives = 186/258 (72.09%), Query Frame = 3 Query: 1137 NEKCDTVPTHA*Y*YRP------------------QHVLIFV*FSPTPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856 N C P H Y Y P + V + + T +VYGD + SPQ E YWG+VNCTGVR+CYDEGKR AETLCFD+HRQ+ + +R+ARIFNT+GPGMHPYDGRVVSNFI+QA+ GEDIT+YG+G QTR+FCYVDDL+DGL+RLMN E IGP+NIGNP EFTIKQLAE+ + S SKI++ PLP DDPKQR+P+I A+K L WEP VPLE+GL I YFR LD+ FKKPT H AH N++ Sbjct: 92 NMACPASPVH--YQYNPVKTMKTSVMGMMNMLGLAKRVKARILQASTSEVYGDPEISPQPEEYWGHVNCTGVRSCYDEGKRAAETLCFDYHRQNGVDIRIARIFNTYGPGMHPYDGRVVSNFIVQAIKGEDITVYGEGQQTRAFCYVDDLVDGLIRLMNQEHTIGPVNIGNPGEFTIKQLAELCVEKVGSKSKIIYLPLPGDDPKQRKPDITKARKYLQWEPKVPLEKGLDFAITYFRELDLGRFKKPTKHTAHLNTD 347
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A835YJC7_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC7_9STRA) HSP 1 Score: 318 bits (816), Expect = 5.580e-96 Identity = 150/212 (70.75%), Postives = 180/212 (84.91%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856 T +VYGDAQ++PQTE YWGNVN GVRACYDEGKRVAETL D+HRQH + +RVARIFNT+GP MHPYDGRVVSNFIMQAL+ +DITIYG G QTRSFC+VDDL+DGL+RLM+++ I P+N+GNP EFTI +LA++ I+L S S+I+ KPLPQDDPKQR+P+I A +ALDW+P LEEGL+ TIEYFR+LDMR FKKPT H+AH NSE Sbjct: 152 TSEVYGDAQQTPQTEQYWGNVNPIGVRACYDEGKRVAETLFLDYHRQHSVQIRVARIFNTYGPSMHPYDGRVVSNFIMQALANDDITIYGSGTQTRSFCFVDDLVDGLLRLMDSDM-ITPVNLGNPNEFTILELAQLIIKLAGSKSRIINKPLPQDDPKQRKPDITVAMRALDWQPRTQLEEGLRATIEYFRHLDMRKFKKPTEHNAHANSE 362
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A2R5FZD8_9STRA (UDP-glucuronate decarboxylase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FZD8_9STRA) HSP 1 Score: 316 bits (809), Expect = 1.430e-95 Identity = 149/213 (69.95%), Postives = 175/213 (82.16%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKAL-DWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856 T +VYGD SPQ E YWG+VN GVR+CYDEGKR AETL FD++RQ+ + +RV RIFNTFGPGMHPYDGRVVSNFIMQAL G DITIYGDG QTRSFC+VDDLI+G+VR MN E +GP+N+GNP EFTIK+LAE+ + LT S+SKI++ PLP DDPKQRRP+I AKK L +WEP V L +GL+KTIEYF+NLDMR +K PT H AH NSE Sbjct: 126 TSEVYGDPNVSPQPEEYWGHVNPNGVRSCYDEGKRAAETLFFDYYRQNNVDIRVLRIFNTFGPGMHPYDGRVVSNFIMQALQGRDITIYGDGSQTRSFCFVDDLIEGMVRFMNQEETVGPVNLGNPCEFTIKELAELVVELTGSTSKIIYMPLPNDDPKQRRPDITKAKKYLQNWEPQVQLRDGLQKTIEYFKNLDMRRYKDPTKHTAHANSE 338
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3TJE7_9SPIT (UDP-glucuronate decarboxylase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TJE7_9SPIT) HSP 1 Score: 314 bits (805), Expect = 4.310e-95 Identity = 146/214 (68.22%), Postives = 175/214 (81.78%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEE 1862 T ++YGD + SPQ E YWG+VN GVR+CYDEGKRV+ETLCFD+ R + + +RVARIFNT+GPGMHPYDGRVV+NFIMQAL+GEDITIYGDG QTRSF YVDD ++GL+RLM + GP+NIGNP EFT+KQLAE+ I L S SKI++ PLP DDPKQRRP+I AKK LDWEP + L EGL KTIEYFR LD+R +KKPT H AH+ +EE+ Sbjct: 120 TSEIYGDPEISPQPEEYWGSVNTIGVRSCYDEGKRVSETLCFDYQRMNNVEIRVARIFNTYGPGMHPYDGRVVTNFIMQALAGEDITIYGDGSQTRSFAYVDDTVEGLLRLMFQDQTTGPINIGNPNEFTVKQLAEIVIELVGSKSKIIYLPLPGDDPKQRRPDITKAKKYLDWEPKIQLREGLTKTIEYFRALDLRKYKKPTPHTAHRTTEED 333
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3BWP6_9EUKA (UDP-glucuronate decarboxylase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BWP6_9EUKA) HSP 1 Score: 314 bits (805), Expect = 1.300e-94 Identity = 152/265 (57.36%), Postives = 190/265 (71.70%), Query Frame = 3 Query: 1137 NEKCDTVPTHA*Y*YRP------------------QHVLIFV*FSPTPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIR------LTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEE 1859 N C P H Y Y P + V + + T +VYGD + SPQ E YWG+VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNF++QA++GEDIT+YG+G QTR+FC+VDDL+DGL+RLMN + IGP+NIGNP EFTIKQLAE+ I+ +T SKI++ PLP DDPKQR+P+I AKK L WEP +PLE+G+ K EYF +LD+ FKKPT H AH N+E+ Sbjct: 100 NMACPASPVH--YQYNPVKTMKTSVVGALNMLGLAKRVKARILQASTSEVYGDPKISPQPEEYWGHVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFLVQAINGEDITVYGEGEQTRAFCFVDDLVDGLIRLMNQDVTIGPINIGNPGEFTIKQLAELAIKTVGVSKVTGKQSKIIYLPLPGDDPKQRKPDITKAKKYLGWEPKIPLEQGIVKAAEYFSSLDLSRFKKPTKHTAHLNTEQ 362
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: R1E5N3_EMIHU (UDP-glucuronate decarboxylase n=4 Tax=Eukaryota TaxID=2759 RepID=R1E5N3_EMIHU) HSP 1 Score: 313 bits (801), Expect = 2.260e-94 Identity = 143/212 (67.45%), Postives = 176/212 (83.02%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSE 1856 T +VYGD + SPQ E YWG VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNFIMQA++GEDIT+YG+G QTRSFC+VDDL+DGL++LMN + IGP+NIGNP EFTIKQLAE+ I+ T SSSKIV PLP DDP+QR+P+I A++ L WEP + LE+GL K + YF +LD+ F+KPT H AH N++ Sbjct: 126 TSEVYGDPEVSPQPEEYWGKVNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFIMQAINGEDITVYGEGKQTRSFCFVDDLVDGLMKLMNQTSTIGPVNIGNPGEFTIKQLAELAIKHTGSSSKIVHLPLPGDDPQQRKPDITKAREILGWEPKIKLEDGLPKAVAYFSSLDLSRFRKPTKHTAHLNTD 337
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A812KMB4_9DINO (UDP-glucuronate decarboxylase n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812KMB4_9DINO) HSP 1 Score: 311 bits (796), Expect = 3.530e-94 Identity = 144/208 (69.23%), Postives = 172/208 (82.69%), Query Frame = 3 Query: 1221 TPQVYGDAQESPQTESYWGNVNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAH 1844 T ++YGD + +PQ+E YWG+VN GVR+CYDEGKRV ETL FD+ R + + +RVARIFNT+GPGMHPYDGRVVSNFI+QAL EDITIYGDG QTRSF +VDD +DGL+RLMN E IGP+NIGNP EFT+K+LAEM I LT S SKIV+ PLP DDPKQRRPNI+ AK+ LDWEP V L EGL+KTI+YF+ LD+R + KPT+H AH Sbjct: 87 TSEIYGDPEVTPQSEDYWGHVNTIGVRSCYDEGKRVTETLAFDYLRMNNVDIRVARIFNTYGPGMHPYDGRVVSNFILQALHNEDITIYGDGSQTRSFGFVDDTVDGLIRLMNQEKTIGPINIGNPNEFTVKELAEMVIELTGSQSKIVYLPLPGDDPKQRRPNIQRAKELLDWEPKVQLREGLQKTIDYFKALDLRKYSKPTSHTAH 294
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Match: A0A7S3I590_9SPIT (UDP-glucuronate decarboxylase n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I590_9SPIT) HSP 1 Score: 303 bits (775), Expect = 9.370e-93 Identity = 144/202 (71.29%), Postives = 170/202 (84.16%), Query Frame = 3 Query: 1281 VNCTGVRACYDEGKRVAETLCFDFHRQHKIAVRVARIFNTFGPGMHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNETEIGPMNIGNPMEFTIKQLAEMTIRLTQSSSKIVFKPLPQDDPKQRRPNIEFAKKALDWEPAVPLEEGLKKTIEYFRNLDMRNFKKPTTHDAHKNSEEERKRAESRA 1886 VNC GVR+CYDEGKR AETLCFD+HRQ+ + +RVARIFNT+GPGMHPYDGRVVSNFIMQA+SGEDIT+YG+G QTRSFCYVDDLIDGL+RLMN E IGP+NIGNP EFTIKQLAE+ I+ T S SKI+ PLP DDP+QR+P+I AKK L WEP VPLEEGL K I+YFR+LD+ F+KPT H AH N+EE+ + + +A Sbjct: 2 VNCNGVRSCYDEGKRAAETLCFDYHRQNGVDIRVARIFNTYGPGMHPYDGRVVSNFIMQAISGEDITVYGEGKQTRSFCYVDDLIDGLMRLMNQEETIGPVNIGNPGEFTIKQLAELAIKYTGSKSKIINLPLPGDDPQQRKPDITKAKKYLKWEPKVPLEEGLPKAIDYFRSLDLSRFRKPTKHTAHLNTEEDHAKRQRKA 203 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9516.17248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9516.17248.1 >prot_H-paniculata_contig9516.17248.1 ID=prot_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp MHPYDGRVVSNFIMQALSGEDITIYGDGGQTRSFCYVDDLIDGLVRLMNNback to top mRNA from alignment at H-paniculata_contig9516:3237..8119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9516.17248.1 ID=mRNA_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4883bp|location=Sequence derived from alignment at H-paniculata_contig9516:3237..8119- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9516:3237..8119- >mRNA_H-paniculata_contig9516.17248.1 ID=mRNA_H-paniculata_contig9516.17248.1|Name=mRNA_H-paniculata_contig9516.17248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig9516:3237..8119- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |