mRNA_H-paniculata_contig9495.17232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A6H5L438_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L438_9PHAE) HSP 1 Score: 184 bits (466), Expect = 1.470e-55 Identity = 93/127 (73.23%), Postives = 104/127 (81.89%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAGAIQAEIDNATATIGGSSLLF 382
LYDMVYVERLPEEQQMTSGLFLP K NP MHVCKVVS+G+ REGESGH++ N AV GDLV+VKDPYGIGPRDD ++FSFVRY+SICAVIPNS+ FEDAAR AG +QAE+D A GS L F
Sbjct: 60 LYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSVGNGREGESGHVTPNDAVKPGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSQDFEDAAREAGKLQAEMDKAA----GSGLAF 182
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: D7FXF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF3_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.510e-55 Identity = 93/127 (73.23%), Postives = 105/127 (82.68%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAGAIQAEIDNATATIGGSSLLF 382
LYDMVYVERLPEEQQMTSGLFLP K NP MHVCKVVS+G+ REGESG+++ N AV GDLV+VKDPYGIGPRDD ++FSFVRY+SICAVIPNSE FE+AAR AG +QAEID A GS L+F
Sbjct: 17 LYDMVYVERLPEEQQMTSGLFLPAKANPRMHVCKVVSIGNGREGESGNVTPNDAVKQGDLVFVKDPYGIGPRDDEFAGKKFSFVRYTSICAVIPNSEDFENAAREAGKLQAEIDKAA----GSGLVF 139
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A835ZNU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU0_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.040e-47 Identity = 78/107 (72.90%), Postives = 89/107 (83.18%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFEDAARSAG 322
LYDMVYVERLPE QQMTSGLFLP KENP MHVCK+VS+G REGESG L NA + GDLVYVKDP+GIGP+DD +FSFVRY +ICAVIPNS+A+E +AR+AG
Sbjct: 15 LYDMVYVERLPEAQQMTSGLFLPGKENPRMHVCKIVSLGQGREGESGTLVENAGLKPGDLVYVKDPWGIGPKDDEFSNHKFSFVRYQNICAVIPNSDAYEASARAAG 121
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A6T5R4I0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5R4I0_HETAK) HSP 1 Score: 113 bits (282), Expect = 8.390e-28 Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVIPNSEAFE 301
LY MVYVERLPE Q T GLFLP +ENP H+C+VVS+G EGESG ++ + + GD VYVK+P+GIG +D+ RR+FSF+RY+ +C A E
Sbjct: 52 LYGMVYVERLPEPVQTTGGLFLPGQENPRRHICRVVSVGPGVEGESGAVATSRGLAPGDYVYVKNPWGIGAKDEQFGRRKFSFLRYNEVCGTFDAGAAME 151
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1UEZ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEZ3_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.080e-22 Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICA 274
LYDM+YVERL E+ Q G+FLPT N +H+ +V+S+G REGE+G ++N + GD+V++++ +GIGPRD+ R R+FSFVR +CA
Sbjct: 94 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCA 186
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1XW59_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW59_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.540e-22 Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICA 274
LYDM+YVERL E+ Q G+FLPT N +H+ +V+S+G REGE+G ++N + GD+V++++ +GIGPRD+ R R+FSFVR +CA
Sbjct: 114 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPRDEEFRGRKFSFVREQDVCA 206
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7R9U985_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U985_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 2.070e-21 Identity = 47/95 (49.47%), Postives = 65/95 (68.42%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVI 280
LYDMVYVERL E+QQ G+FLP N +H+ +VVS+G REGE+G ++N GD+V++++ +GIGPRD+ R+FSFVR +CA I
Sbjct: 76 LYDMVYVERLGEDQQSAGGVFLPKVSGGNQDLHMARVVSVGDGREGENGCKTMNGNYKQGDIVFLRNAWGIGPRDEEFFGRKFSFVREQDVCAHI 170
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S2NV19_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NV19_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.690e-15 Identity = 38/96 (39.58%), Postives = 63/96 (65.62%), Query Frame = 2 Query: 5 YDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDG-GRRRRFSFVRYSSICAVIPNS 289
YDMV VER+ + + +SGL++P +E P +H+ +V+SMG RE E+G ++ +GD+V +KDP+GIGP+D+ ++ S+ +I AV+ S
Sbjct: 71 YDMVLVERIQGKPKTSSGLYVPEQELPRLHLARVLSMGPGREEENGMITAMPNFKVGDVVVLKDPWGIGPKDEETSDGKKLSYAMAKNIAAVLDGS 166
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A4D9CVR2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVR2_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 3.300e-14 Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 5 YDMVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPRDDGGRRRRFSFVRYSSICAVI 280
+ + VERL + GLFLP+ + +H+ +VVS+G GESG L+ + GD+ YVK P+GIGPRD+ R+FSF+R + + I
Sbjct: 76 WQYLLVERLEAPTETQGGLFLPSTDQDPLHMVRVVSIGSGLVGESGMLTTIENLGRGDVAYVKQPWGIGPRDENWEGRKFSFIRSHDVLSRI 167
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Match: A0A7S1UF34_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UF34_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.440e-14 Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 2 LYDMVYVERLPEEQQMTSGLFLPTKE--NPGMHVCKVVSMGHEREGESGHLSLNAAVNIGDLVYVKDPYGIGPR 217
LYDM+YVERL E+ Q G+FLPT N +H+ +V+S+G REGE+G ++N + GD+V++++ +GIGPR
Sbjct: 94 LYDMIYVERLGEDTQSAGGVFLPTMSGSNQDLHMARVLSVGDGREGENGLRTMNGSYKEGDIVFLRNAWGIGPR 167 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9495.17232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9495.17232.1 >prot_H-paniculata_contig9495.17232.1 ID=prot_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MVYVERLPEEQQMTSGLFLPTKENPGMHVCKVVSMGHEREGESGHLSLNAback to top mRNA from alignment at H-paniculata_contig9495:3062..4417+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9495.17232.1 ID=mRNA_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig9495:3062..4417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9495:3062..4417+ >mRNA_H-paniculata_contig9495.17232.1 ID=mRNA_H-paniculata_contig9495.17232.1|Name=mRNA_H-paniculata_contig9495.17232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig9495:3062..4417+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |