mRNA_H-paniculata_contig9492.17230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: D7FQZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ5_ECTSI) HSP 1 Score: 238 bits (607), Expect = 5.000e-71 Identity = 130/200 (65.00%), Postives = 151/200 (75.50%), Query Frame = 3 Query: 33 YDPYDDRKAPKRAXXXXXXXX-----DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSGRGKQKRPS---RQAPPRYDDDYGYXXXXXXNGGGGWGGYDD 608
YDPY++R+ ++ DLTGTI +GNKKYG+YALAGSVLLTMMG+SLMFE+NLIRLGNLGFVAGM+LFIGPSNV+RYFTQASKLRG++IF VGFFFVFTGHPI+GLA+EVFGFLNLFGNMLPM+WAMASNMPFIK+I+ SG ++ K R AP R DDY Y GGG+G YDD
Sbjct: 183 YDPYEERRGSSKSGGRGRGKSGAGGFDLTGTIANGNKKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIMGSGSSKGKXXXXXXXXXXXXXXRAAPSR--DDYDYDRQ-----GGGYG-YDD 374
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A6H5KWX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX1_9PHAE) HSP 1 Score: 232 bits (592), Expect = 3.440e-68 Identity = 109/130 (83.85%), Postives = 126/130 (96.92%), Query Frame = 3 Query: 96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRK 485
DLTGTIT+GNKKYG+YALAGS+LLTMMG+SLMFE+NLIRLGNLGFVAGM+LFIGPSNV+RYFTQASKLRG++IF VGFFFVFTGHPI+GLA+EVFGFLNLFGNMLPM+WAMASNMPF+K+I+ SG ++ K
Sbjct: 263 DLTGTITNGNKKYGIYALAGSILLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFVKEIMGSGSSKGK 392
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S1XYC5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYC5_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.400e-40 Identity = 84/167 (50.30%), Postives = 108/167 (64.67%), Query Frame = 3 Query: 111 ITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDII-DSGGNQRKKSGRGKQKRPSRQAPPRYDDDYGYXXXXXXNGGGGWGGYDD 608
+ GNKKYGV L G ++TM+G++LMFERNL+RLGNL VAG+AL +GP ++RY Q SKLRGT +F +GF + G P VG+ +E+FG +NLFGNM PM+WA+ MP +K++ DSGG K GRG +RP R YD D GY G G GY D
Sbjct: 39 LKKGNKKYGVVCLGGGTVVTMLGMTLMFERNLMRLGNLLQVAGLALLMGPPRLVRYLLQKSKLRGTTVFSLGFLLMLNGRPFVGMILELFGIINLFGNMFPMVWAVVQRMPIVKELFRDSGG---KAGGRG-ARRPQRG----YDRDSGYDDQQPYGGDDGDRGYYD 197
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A835Z8R7_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R7_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.070e-37 Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 3 Query: 96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGG 473
DL +T G+K +G +A VLLT MGISL F + LIRLGNL V G++L IGPS ++YFT +KLRGTIIF +GFF VFTGHPI+G+A EVFGFLNLFGNMLP+L MA +P + D+I G
Sbjct: 520 DLGSVVTKGHKTWGGMCIAAGVLLTGMGISLFFNKFLIRLGNLALVLGVSLLIGPSRCVKYFTHPTKLRGTIIFALGFFLVFTGHPILGIAAEVFGFLNLFGNMLPLLTMMARQLPVVGDLIPQPG 645
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A6V1NTD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NTD6_HETAK) HSP 1 Score: 142 bits (358), Expect = 1.210e-35 Identity = 70/151 (46.36%), Postives = 98/151 (64.90%), Query Frame = 3 Query: 99 LTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSGRGKQKRPSRQAPPRYDDDY 551
L G + KKYG + +L T++G+SL FE+NL+RLGN+ F+ G AL IGP + +FT +LR T F VG FFV G P++G+ E+FGFLNLFGNM P++W+M NMPF++D++ GN + S G +++P RQ DDDY
Sbjct: 120 LGGLAGNKTKKYGFMFVGAGLLFTILGMSLFFEKNLLRLGNVLFLTGAALVIGPGRTVGWFTAKQRLRATGTFAVGVFFVLIGKPVIGMIFEIFGFLNLFGNMFPLVWSMTKNMPFVRDLV---GNSPRSSKGGSRQKPKRQQNYYDDDDY 267
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7R9U9B3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9B3_9STRA) HSP 1 Score: 134 bits (338), Expect = 8.080e-34 Identity = 60/142 (42.25%), Postives = 93/142 (65.49%), Query Frame = 3 Query: 33 YDPYDDRKAPKRAXXXXXXXXDLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDI 458
Y+ ++R P+R ++ + GNKKYG+ + G ++TM+GI+LMFE+NL+RLGNL VAG+AL +GP+ ++ Y Q SKLRG ++F GF F+ G +G +E+FG +NLFGNM P+LW + MP ++++
Sbjct: 49 YEEEEERYEPRRQRRPQRDHVGMSA-LRKGNKKYGIMCIGGGTVVTMLGITLMFEKNLMRLGNLLQVAGLALLLGPARLVSYMMQRSKLRGAMVFATGFTFIMNGRSFIGFFLELFGIINLFGNMFPVLWNLVQRMPIVREL 189
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S2XZL7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL7_9STRA) HSP 1 Score: 132 bits (332), Expect = 4.610e-32 Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 3 Query: 96 DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRK 485
D T +T GNKK G L +LTM+G++L FE+NL+RLGNL F+AG++ +GP +I YF K RG + F +G VF GHP++G+ +E FG LNLFGNM P++W+M MPFI+D++ G+ RK
Sbjct: 123 DATMFLTQGNKKVGFALLGSGSVLTMLGMTLFFEKNLLRLGNLLFLAGVSQVMGPKRMIGYFMAPDKRRGGVTFCLGVVLVFMGHPVLGMLLEFFGILNLFGNMFPIVWSMVKKMPFIRDLV---GDDRK 249
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S1UWW3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWW3_9STRA) HSP 1 Score: 123 bits (309), Expect = 6.670e-29 Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 3 Query: 33 YDPYDDRKAPKRAXXXXXXXX---DLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSG 470
YD YDDR + R+ ++ + +G+K+ G+ L G +LT++GISL F ++L+R+GNL V G+ + IGP + YF Q K R T G F VF G P+ G+A+EVFG LNLFGNM P+L A+ MPF+K + G
Sbjct: 60 YDYYDDRGSSSRSQSPRSSTPLPGGISKILRNGDKRIGMMLLGGGGILTLLGISLFFNKSLLRMGNLLLVGGVPITIGPGRTMGYFFQPKKSRATACLCAGIFLVFIGWPVFGIALEVFGLLNLFGNMFPVLMAVLKQMPFVKSVFGGG 208
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: A0A7S4NBY5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBY5_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.090e-28 Identity = 68/163 (41.72%), Postives = 95/163 (58.28%), Query Frame = 3 Query: 6 RDRGSGGGGYDPYDDRKAPKRAXXXXXXXXDLTGTITSGNKKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFIKDIIDSGGNQRKKSG 494
R GSG GG P K P+ + +GN+K G+ L+G LT++G++L F ++L+RLGNL FVAG+ L +GP YF Q SK R T G F VF G P+VG+A+EVFG LNLFGNM P+ A+A N+P + ++ +G + +SG
Sbjct: 252 RSXGSGNGGGSPLSGVKLPEM--------------MKTGNRKVGLALLSGGAALTLLGVTLFFNKSLLRLGNLLFVAGVPLTLGPGRTAGYFLQPSKARATGCLAAGMFLVFVGWPVVGIALEVFGLLNLFGNMFPVAMALARNVPVLGSLLGNGNGGKSRSG 400
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Match: F0YIZ2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIZ2_AURAN) HSP 1 Score: 116 bits (290), Expect = 5.470e-28 Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 3 Query: 126 KKYGVYALAGSVLLTMMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMVGFFFVFTGHPIVGLAVEVFGFLNLFGNMLPMLWAMASNMPFI 449
+K G+ A TM+G+SL FE+NLIRLGN+ VAG + +GP RY +KLRG++ F GF + +GHP++G+ VE+FGFLNLFGN+ P+ AM N+PF+
Sbjct: 1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9492.17230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9492.17230.1 >prot_H-paniculata_contig9492.17230.1 ID=prot_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp MMGISLMFERNLIRLGNLGFVAGMALFIGPSNVIRYFTQASKLRGTIIFMback to top mRNA from alignment at H-paniculata_contig9492:2294..8334+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9492.17230.1 ID=mRNA_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6041bp|location=Sequence derived from alignment at H-paniculata_contig9492:2294..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9492:2294..8334+ >mRNA_H-paniculata_contig9492.17230.1 ID=mRNA_H-paniculata_contig9492.17230.1|Name=mRNA_H-paniculata_contig9492.17230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig9492:2294..8334+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |