mRNA_H-paniculata_contig949.17227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 6.590e-10 Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1 Query: 550 RYS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
+YS + ++ DEVPKHLH ++ +CT+K+LTV R RRFARRTRD+CRAY ++
Sbjct: 53 KYSWGLSKQKFRRKINDEVPKHLHANIEKSLCTDKYLTVGRVRRFARRTRDHCRAYRDI 111
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM16_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 7.430e-10 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
YS ++ DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 30 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 87
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.270e-9 Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLELQKG 735
DEVPKHLH ++ MC EK LT+ R RRFARRTRDYCRAY E+Q G
Sbjct: 305 DEVPKHLHANIEKSMCREKHLTIGRVRRFARRTRDYCRAYREIQLG 350
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5JCU7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU7_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 5.310e-9 Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 131 DEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 173
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.790e-8 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
YS ++ DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 481 YSWGFSKQKFRRRINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 538
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KLA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA1_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 1.820e-8 Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 Query: 598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 292 DEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 334
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.870e-8 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
YS ++ DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 549 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 606
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 2.080e-8 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1 Query: 553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
YS ++ DEVPKHLH ++ +C +K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 895 YSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTIGRVRRFARRTRDYCRAYREI 952
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.570e-8 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 Query: 553 YS*TIEREAVPHACVDEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLEL 726
YS ++ DEVPKHLH ++ +C K+LT+ R RRFARRTRDYCRAY E+
Sbjct: 286 YSWGFSKQKFRRKINDEVPKHLHDNIEESLCIHKYLTIGRVRRFARRTRDYCRAYREI 343
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 2.820e-8 Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 1 Query: 598 DEVPKHLHQDMVALMCTEKFLTVQRARRFARRTRDYCRAYLELQKG 735
DEVPKHLH ++ MC EK L + R RRFARRTRDYCRAY E Q G
Sbjct: 955 DEVPKHLHANIEKSMCREKHLMIGRVRRFARRTRDYCRAYRETQLG 1000 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig949.17227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig949.17227.1 >prot_H-paniculata_contig949.17227.1 ID=prot_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp MLLCIAVCAAVCTYLQCCYYDTNAVGACLDCCTPRPPCCFLYPTGKSHHSback to top mRNA from alignment at H-paniculata_contig949:8817..9553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig949.17227.1 ID=mRNA_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=737bp|location=Sequence derived from alignment at H-paniculata_contig949:8817..9553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig949:8817..9553+ >mRNA_H-paniculata_contig949.17227.1 ID=mRNA_H-paniculata_contig949.17227.1|Name=mRNA_H-paniculata_contig949.17227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig949:8817..9553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |