mRNA_H-paniculata_contig9483.17226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI) HSP 1 Score: 449 bits (1156), Expect = 2.130e-154 Identity = 215/328 (65.55%), Postives = 256/328 (78.05%), Query Frame = 2 Query: 2 LRRIDITGLGPSEVRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKESL-PARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982 L RID+TGL ++V LVDFS+P IL+GVL CE WC+ L++DL +E FQIR N RSEVF SL DFV LQ+ESTH+ SWYLLDEHLLD P+ARP+L +L Q LLG DEF+ FPP+VRPQ C I+GGVGARSFLHSDPMEWMGWN+LLEG+KLWTFLPPL +LD+ LGTYRL PNAFGSHN+SAGWQSNVDLY++ T SWP + GQEV+ HA+SGVQE GE+V+IPPR+WHQVYHLEPS+AVASQYMD RVRDRVFRH+L+WCG + L +RFD L +Q +EVLK +LVAR+G KGL+AF+ L Sbjct: 84 LPRIDVTGLSRAQVADLVDFSRPCILTGVLSSPDCESWCDGLLQDLGEETCAFQIRDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGTDEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATA------SWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASDDVLLSSRFDALALRDQIKEVLKVALVARHGGEKGLEAFDGL 405
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A7S2R9P6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9P6_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.420e-54 Identity = 127/376 (33.78%), Postives = 180/376 (47.87%), Query Frame = 2 Query: 8 RIDITGLGPSEVRSLVDFSQPVILSGVLPG--------RKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAF--GSHNISAGWQSNVDLYRN------------------APPTV--DHRNGV-------SWPMSSPGQEVLAHAISG----------VQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKESLPARFDFLPPAE----QAREVLKTSLVARYGEPKGLKAFENL 982 + D+ P + RS VD + ++ L G E W A E A E V + + + SL FV L +S H +S+YLLDE LL + P LA L + G D F FP ++P++ C+++GG G+RS LH+DPMEW GWN LLEG KLWTFLPP + LG+ R+ + G +NISAGWQS+VDLY P++ D+ G+ P VL + G +Q EG++V IPP +WHQ YHLEPS+AVA QY+ + +V H+ WC + F + E +E+L +L A++G+ KG + F +L Sbjct: 76 QFDVVTGRPEQFRSEVDGRRVGVIKNALWGDMGAARSAEAMEAWTAAFFEAFAQERVTCHTKDSTTGETTALDLSLSHFVD-LAFKSNHQHSYYLLDESLLS---SAPSLASSLTLPEAWFGKDHFGLFPAELQPKQPCLVMGGAGSRSSLHADPMEWTGWNYLLEGSKLWTFLPPGKGTETALGSRRVLSGEWDGGKYNISAGWQSDVDLYMEKIAGKGRSGDWPSAAALGVMPSIARDYALGLVEGSCNTGHPFMPSNAMVLDALVDGRSLEDGRIAVLQREGDLVHIPPGWWHQTYHLEPSVAVAGQYLSSQNFQKVAAHVCKWCDASIGDAGSHFQQVADTEGYETAIQELLLLALRAQHGQAKGDELFSSL 447
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A8J5Y022_DIALT (JmjC domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y022_DIALT) HSP 1 Score: 181 bits (460), Expect = 1.500e-50 Identity = 116/293 (39.59%), Postives = 153/293 (52.22%), Query Frame = 2 Query: 68 PVILSGVLP-GRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQE--ESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFE-HFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN--ISAGWQSNVDLYRN----APPT----------------VDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCGTGKES 868 P++L+ L G E W + L+E A V+ Q+R RS RE + G E ++H + W LL + L +A P L L L D FE HFPP +RP CVI+GG GARS LH+DP EW+G N+ LEG+KLW FLPP PEL A L YRL A+GS +SAGWQS+ DLY AP D R G+ P + + + VQ GE+++IPP +WHQ Y+ EPS A QY+D R VF+H+L+W TG+ + Sbjct: 5 PLLLTHALADGSALETWADRLVEHAAAARVEVQVRRG---RSTELREVT---LSGACELAYASHHSEWSLLFDERLVSARA-PQLERELALRPGLFEPDWFEAHFPPELRPSRTCVIVGGEGARSTLHADPFEWVGTNVCLEGRKLWRFLPPEPELSAQLRGYRLPSIAWGSQGGALSAGWQSDFDLYATRRAGAPGARALRDSARADEQLRAMADVRTGLLRPDARLPADAARRLVGCVQRAGELLLIPPGWWHQSYYPEPSFCAAGQYLDSFCRASVFQHVLDWTRTGRRA 290
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: W7TWL4_9STRA (F-box protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWL4_9STRA) HSP 1 Score: 173 bits (439), Expect = 8.320e-47 Identity = 112/339 (33.04%), Postives = 172/339 (50.74%), Query Frame = 2 Query: 107 ELWCEALMEDLADEYVDFQIRSNAD-CRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLG-VDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQS-NVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHAISGVQ----EEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNW----------------------------------------CGTGKESLPARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982 + + + E+ D ++ Q++ N+ + ++ +L V G+ ++STH+ +WYLL+E LL+ + R + R +L G +D F+ FP +RP++HC+I+GG GARSFLH DP EW G N LLEG+K+WTF PP A LG R+ P A+ +SAGW+S + DLY P + + P EVLA + GVQ EEGE+V+IPP + HQVYHL+P +++A Q + V H+L W C E + R + E+A L+ +++ R+G +GL+A+E L Sbjct: 74 DTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRK-IKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPC---SADLGLKRVLPEAWEGE-VSAGWKSTDFDLYYKVPEIFEGAVTLDLP------EVLAD-VEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKA---LRQAMILRHGPERGLQAYERL 397
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.990e-40 Identity = 86/177 (48.59%), Postives = 107/177 (60.45%), Query Frame = 2 Query: 476 LEGQKLWTFLPPLPELDAPLGTYRLTPNAFG-SHNISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPG------QEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQ-YMDERVRDRVFRHILNWCGTGKESLPARFDFLPPAEQAREVLKTSLVARYGEPKGLKAFENL 982 +EG+KLWTFLPP PE L YRL PNA+G S+N+SAGWQS VDLYR P + +G M S ++V A VQ EGE V+IPPR+WHQV HL PSIAVASQ Y R R R+F+HI +WCG G + P PP +Q VL+ L A++G G + F+ L Sbjct: 1 MEGEKLWTFLPPCPE--HLLDGYRLPPNAWGGSYNVSAGWQSPVDLYR--PFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVASQHYAGARGRRRIFQHIRDWCGCGGSAAPPEIRSWPPQKQVEWVLQEGLCAKHGTDVGERLFKEL 173
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A8J2SEA1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA1_9STRA) HSP 1 Score: 145 bits (367), Expect = 5.190e-37 Identity = 101/279 (36.20%), Postives = 135/279 (48.39%), Query Frame = 2 Query: 41 VRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEF-EHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLY-------RNAPPTVDHRNGVSWPMS----SPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHIL 841 +R+ +D QP + +G L C+ W LME D V QI + F L +F STH+ +L DE LL+ A I G + + + FP RP + CV+ G GARS LH DP +W G +L LEG K+W FL L DA L Y+L AFG SAG QS++DLY +A D R+ V +P +V + +Q G+VVI+PP+ WHQ Y LEPS AVASQ+ R VF H++ Sbjct: 32 IRAALDSGQPFVAAGALSPEACDAWTGNLMEGFGDAIVTQQIAGDP------FDAPLAEFFYDALA-STHETPHFLFDEALLE---GNLRAAAIAPQRAIFEGEESWLDAFPAERRPADACVVCAGAGARSPLHRDPYDWTGTSLCLEGSKVWRFL--LDVDDADLEAYKLPSEAFGDD--SAGTQSDIDLYCVQEGDWPDAADFEDDRDLVKAKAGPENFTPSTQVPGRFCTALQFAGDVVIVPPKSWHQTYALEPSCAVASQFCGRRDAPTVFEHMI 296
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A812KFH2_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812KFH2_9DINO) HSP 1 Score: 141 bits (356), Expect = 1.490e-35 Identity = 84/260 (32.31%), Postives = 130/260 (50.00%), Query Frame = 2 Query: 116 CEALMEDLADEYVDFQIRSNADCR--SEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN-------ISAGWQSNVDLYRN-----APPTVDHRNGVSWPMSS-PGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWC 850 C+ L+E+ + V+++ ++ + +++ + L DFV S H++ L+DE+++ L L + L D F FP +RP C+++GG GARS LH DP+ W GWN LL+G+KLW F P +P+ +R FG I +GW+S+VDL+ N A P D +S + P + + + VQE GE +I P +WHQ YHL P+ A Q ++ RV HI+ WC Sbjct: 39 CKTLLEEAGCQEVEYKRATHGELNLATDLLSKVLCDFV----PNSYHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPRMLRPAPLCLVVGGRGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---NAEAFRPMSRPFGIRKGGAEVCTIGSGWRSDVDLFANRTHPAAEPLCDSFGSLSPDLGQFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN) HSP 1 Score: 140 bits (352), Expect = 3.470e-35 Identity = 98/268 (36.57%), Postives = 128/268 (47.76%), Query Frame = 2 Query: 41 VRSLVDFSQPVILSGVLPGRKCELWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDE---FEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHNISAGWQSNVDLYRNA-------PPTVDHRNGVSWPMSSPGQEV-------LAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVAS 793 + + +D +P I + L R CE W +ALM L D V Q R E LG F S+H +L DE LLD DL Q + E F+HFP + RP++ CV+ G GARS LH DP +W G +L +EG K+W F L DA LG Y L AFG SAG QS+ DLY P D ++ S+ + A ++ +Q G+VV++PPR WHQ Y LEPS+AVAS Sbjct: 42 IAAALDAGEPFIAAEALSARDCEAWTDALMMRLGDAPVRRQRRG------EALEMPLGAFFEDALT-SSHALPSFLFDEFLLD---GDDDLRGAAVGPQRAIFGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFA--LDVADADLGAYELASEAFGGD--SAGTQSDADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A830HZM1_9CHLO (JmjC domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZM1_9CHLO) HSP 1 Score: 140 bits (354), Expect = 3.890e-35 Identity = 93/259 (35.91%), Postives = 134/259 (51.74%), Query Frame = 2 Query: 113 WCEALMEDLADEYVDFQIRSNADCRSEV--FRESLGDFVGGLQEESTHDNSWYLLDEHLL-DLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLP----PLPELDAPLGTYRLTPNAFGSHN--ISAGWQSNVDLY--RNAPPT-VDHRNGVSWPMSSPGQEVLAHAISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWCG 853 W L+ + +V+ +R N S V F E+LG+ S HD+S +++E LL + P D A R + + ++ + PP++RP CV+ GG G+RS LH+D W+GWN L+EG+K WTF+P P E+ R+ P A+ N I AGWQ+ VD Y R+A T R G + + + H I+ Q EGE+VIIPP +HQVYH ++A+A QY D V RH+ W G Sbjct: 53 WLSDLVASAENTHVEVLLRENNHTSSFVAPFMEALGEIA----HASDHDSSVLIVEEDLLANSPAHVQDAA---RLPKEICAENKLDQLPPSLRPGT-CVLFGGAGSRSSLHADAFGWVGWNYLVEGEKTWTFIPHDAFPADEV-----CVRVPPAAWAGDNTSIGAGWQTAVDAYAERSADGTSFTARGGTQEHARAVEEAIQNHGITVHQSEGELVIIPPECFHQVYHHTATVAIAGQYADNTNWPIVCRHVGRWVG 298
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Match: A0A812XB14_9DINO (PSR protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XB14_9DINO) HSP 1 Score: 144 bits (364), Expect = 9.050e-35 Identity = 92/294 (31.29%), Postives = 136/294 (46.26%), Query Frame = 2 Query: 20 TGLGPSEVRSLVDFSQPVILSGVLPGRKCE----LWCEALMEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEHLLDLPKARPDLAWILRSVQTLLGVDEFEHFPPAVRPQEHCVIIGGVGARSFLHSDPMEWMGWNLLLEGQKLWTFLPPLPELDAPLGTYRLTPNAFGSHN-------ISAGWQSNVDLYRNAPPTVDHRNGVSWPMSSPGQEVLAHA------ISGVQEEGEVVIIPPRYWHQVYHLEPSIAVASQYMDERVRDRVFRHILNWC 850 TGL P + DF+ VLP E C+ L+E+ + V+++ + + + +SL + S H++ L+DE+++ L L + L D F FP +RP + C+++GG GARS LH DP+ W GWN LL+G+KLW F P +P+ +R FG I +GW+S+VDL+ N T S+ SP H + VQE GE +I P +WHQ YHL P+ A Q ++ RV HI+ WC Sbjct: 8 TGLDPED-----DFTSAADCLLVLPNSFQEASSNFCCKTLLEEAGCQEVEYKRAAQGELS--LATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSL---LEAAPPFLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQ---HAEAFRPASRPFGIRKGGAEVCTIGSGWRSDVDLFANRTNTAAEPPCDSFGWLSPDLAKFPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRWC 288 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9483.17226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9483.17226.1 >prot_H-paniculata_contig9483.17226.1 ID=prot_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=287bp MEDLADEYVDFQIRSNADCRSEVFRESLGDFVGGLQEESTHDNSWYLLDEback to top mRNA from alignment at H-paniculata_contig9483:4204..6225- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9483.17226.1 ID=mRNA_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2022bp|location=Sequence derived from alignment at H-paniculata_contig9483:4204..6225- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9483:4204..6225- >mRNA_H-paniculata_contig9483.17226.1 ID=mRNA_H-paniculata_contig9483.17226.1|Name=mRNA_H-paniculata_contig9483.17226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at H-paniculata_contig9483:4204..6225- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |