mRNA_H-paniculata_contig9475.17222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI) HSP 1 Score: 342 bits (878), Expect = 6.090e-104 Identity = 169/195 (86.67%), Postives = 183/195 (93.85%), Query Frame = 1 Query: 1 GATGDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLGLQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIERTR 585 G GDG+VGL NLGNTCYINSSVQCLSHTP+LT+YFLS AY+NDVNV+NKLGLQELLAFLLNGLNEDLNRIADKP+IEQPDSDGR D ELADIWW+NHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQ LPLPE+TERSV+V++VLLDGAR P KCSLRLPK+GRVSD++RAIV TFNAPP ER R Sbjct: 929 GVIGDGMVGLGNLGNTCYINSSVQCLSHTPLLTEYFLSSAYVNDVNVDNKLGLQELLAFLLNGLNEDLNRIADKPYIEQPDSDGRSDAELADIWWKNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQ-LPLPENTERSVMVIVVLLDGARCPAKCSLRLPKSGRVSDLVRAIVDTFNAPPTERAR 1122
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE) HSP 1 Score: 318 bits (815), Expect = 1.830e-95 Identity = 168/240 (70.00%), Postives = 182/240 (75.83%), Query Frame = 1 Query: 1 GATGDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLGLQ-----------------------------------------------ELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIER 579 G GDG+VGL NLGNTCYINSSVQCLSHTP+LT+YFLS AY+NDVNV+NKLGLQ ELLAFLLNGLNEDLNRIADKP+IEQPDSDGR D ELADIWW+NHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQ LPLPEDTER+V+V++VLLDGAR P KCSLRLPK+GRVSD++RAIV TFNAPP ER Sbjct: 969 GVIGDGMVGLGNLGNTCYINSSVQCLSHTPLLTEYFLSSAYVNDVNVDNKLGLQGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQELLAFLLNGLNEDLNRIADKPYIEQPDSDGRSDAELADIWWKNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQ-LPLPEDTERTVMVIVVLLDGARCPAKCSLRLPKSGRVSDLVRAIVDTFNAPPPER 1207
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S2SQ88_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQ88_9STRA) HSP 1 Score: 231 bits (588), Expect = 4.810e-65 Identity = 126/234 (53.85%), Postives = 151/234 (64.53%), Query Frame = 1 Query: 10 GDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG-----------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNAPP 570 GDGLVGL NLGNTCY+N+S+QCLSHTP+L+ YFL+++YL DVN N LG QELLAFLL GL+EDLNRIA KP+IEQPDSDGRPD ELADIWW+NHLRRE SI+VALF GQ+KSVL C CGY SAR+EPF FLQ LPLPE+ R ++VVL+ LDG+ P+K S+R+ KT + D+ A+V A P Sbjct: 693 GDGLVGLYNLGNTCYLNASLQCLSHTPLLSQYFLNKSYLGDVNCTNILGHQGRLAAAYATLVQSLWSTRRKAMNPRAFKTAIGRMNEQFAGNDQHDAQELLAFLLGGLSEDLNRIAKKPYIEQPDSDGRPDRELADIWWQNHLRRELSIIVALFTGQYKSVLTCSHCGYASARYEPFTFLQ-LPLPEEEYRFMLVVLIPLDGSLPPIKYSVRVLKTASIRDVRAALVGAAGAGP 925
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S4RQ17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RQ17_9STRA) HSP 1 Score: 216 bits (551), Expect = 6.870e-64 Identity = 122/283 (43.11%), Postives = 153/283 (54.06%), Query Frame = 1 Query: 10 GDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG-----------------------------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIERTRCQRRSPKLMPNAVDNGDGAV 645 GDG+VGL N+GNTCY+NSS+QCLSHTP+ DYF S++YLND+N N LG QELLAFLL+GL+EDLN+I DKP+IE PDSDGRPD ELADIWW NHL+RE SI+VALF GQ+KS+L CR C YESARFEPF FLQ LPLPED + SV ++L + R +K S+R+ G + D++ ++ +A IE + + P D G V Sbjct: 54 GDGIVGLYNMGNTCYLNSSIQCLSHTPIFRDYFTSKSYLNDINRTNPLGQQGRLAQVSAVLINSLWKRFNQQPSLMGFGGKKITQPGSFTPINAPALTPKSFKEALGKFSDHFAGNEQHDAQELLAFLLSGLSEDLNQIVDKPYIEAPDSDGRPDKELADIWWSNHLKREMSIIVALFTGQYKSLLTCRSCKYESARFEPFAFLQ-LPLPEDDQISVQLILYPIQDERAVMKYSVRVRHDGTIKDLLASLAKVLHADMIEDEKLSQEQKSTDPEKDDTSKGVV 335
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A6U2EHX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2EHX2_9STRA) HSP 1 Score: 204 bits (520), Expect = 2.450e-60 Identity = 123/283 (43.46%), Postives = 148/283 (52.30%), Query Frame = 1 Query: 1 GATGDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG----------------------------------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGA---------------RMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIE 576 G GDG+VGL N+GNTCY+NSS+QCLSHTP+L DYF S+ YLND+N N LG QELLAFLL+GL+EDLNRI DKP+IE PDSDGRPD ELADIWW NHL+RE SIVVALF GQ+KS+L CR C YESARFEPF FLQ LPLPED + SV +VL L G+ +P K +R+ G + D++ ++ A +E Sbjct: 64 GPVGDGIVGLYNMGNTCYLNSSIQCLSHTPILRDYFTSKVYLNDINTTNPLGQQGRLAQVTAVLINELWKRSSQQQSNQGFGPPKRSASSASSSGNYTPIQAPALTPKSFKEAIAKFNDHFAGNEQHDAQELLAFLLSGLSEDLNRIVDKPYIEAPDSDGRPDKELADIWWSNHLKREMSIVVALFTGQYKSLLTCRTCKYESARFEPFAFLQ-LPLPEDDQVSVQLVLYPLGGSGGFEGSGGGGGVSKEAVPTKYIVRVRHDGTLFDVLTSLSKVLYADMVE 345
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S2R8Y4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8Y4_9STRA) HSP 1 Score: 208 bits (529), Expect = 6.460e-60 Identity = 115/247 (46.56%), Postives = 142/247 (57.49%), Query Frame = 1 Query: 4 ATGDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG---------------------------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDII 537 A GDG+VGL N+GNTCY+NSS+QCLSHTP+ DYF S++YLND+N N LG QELLAFLL+GL+EDLNRI DKP+IE PDSDGRPD ELADIWW NH++RE SI+VALF GQ++S+L CR C YESARFEPF LQ LPLPED + SV ++ L + +K S+R+ + G +SDI+ Sbjct: 64 AMGDGVVGLYNMGNTCYLNSSIQCLSHTPIFRDYFTSKSYLNDINTTNPLGHQGRLAQVSAVLINSLWKKFNQTSLPTATRKAHSPGSSVPINAPSLTPKSFKEAIGKFNEHFAGNEQHDAQELLAFLLSGLSEDLNRIVDKPYIEAPDSDGRPDKELADIWWSNHMKREMSIIVALFTGQYRSLLTCRTCKYESARFEPFSCLQ-LPLPEDDQVSVQLIYFPLSNDKFSMKYSIRVKQDGALSDIL 309
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S1ZUJ0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUJ0_TRICV) HSP 1 Score: 201 bits (510), Expect = 1.080e-58 Identity = 115/257 (44.75%), Postives = 140/257 (54.47%), Query Frame = 1 Query: 22 VGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG----------------------------------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNA 564 VGL N+GNTCY+NSS+QCLSHTP+L DYF S+AYLND+N N LG QELLAFLL+GL+EDLNRI DKP+IE PDSDGRPD ELADIWW NHL+RE SI+VALF GQ+KS+L CR C YESARFEPF FLQ LPLPED + V +V LD + P + +R+ G + D++ ++ +A Sbjct: 1 VGLYNIGNTCYLNSSIQCLSHTPILRDYFTSKAYLNDINTTNPLGQQGRLAQVCAVLINELWKRASQSQSNSSLAMGPPKRATPTGPGSNSPINAPSLTPKSFKDAIGKFNDHFAGNEQHDAQELLAFLLSGLSEDLNRIVDKPYIEAPDSDGRPDKELADIWWSNHLKREMSIIVALFTGQYKSLLTCRSCKYESARFEPFAFLQ-LPLPEDDQVPVQLVYYALDESIGPTRYVVRVRHDGTLHDVLMSLSRVLHA 256
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S1TVS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVS6_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.420e-58 Identity = 114/234 (48.72%), Postives = 142/234 (60.68%), Query Frame = 1 Query: 10 GDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG--------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFN 561 GDGLVGLNNLGNTC++NS++QCL HTP+LTDYFL+R YL DVN EN LG QELL+FLL+GL+EDLNRI KP+IE PDSDGRPD ELADIWW NHL+RE SI+VALF GQFK V+ C CGY SARFE F L +PLP+D +R++VV G R P+ ++R+ + G + ++ AIV ++ Sbjct: 188 GDGLVGLNNLGNTCFMNSALQCLGHTPVLTDYFLTRRYLCDVNAENPLGQQGRIAHVFALLVRELWRDGPRNRSFTPRKFKRAIATVNDGQFAGNEQHDAQELLSFLLSGLSEDLNRIEKKPYIENPDSDGRPDGELADIWWANHLQRELSIIVALFTGQFKQVMTCSHCGYASARFEVFTTLS-VPLPQDPKRTLVVRYTP-GGGRRPLFLAVRVRRDGTLGAVLDAIVELYD 419
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: A0A7S2U800_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U800_9STRA) HSP 1 Score: 204 bits (519), Expect = 1.420e-56 Identity = 120/285 (42.11%), Postives = 152/285 (53.33%), Query Frame = 1 Query: 10 GDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLG----------------------------------------------------------------------LQELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGARMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIERTRCQRR-------SPKLMPNAVDNG 633 GDG+VGL N+GNTCY+N+S+QCLSHTP+L DYF S+AYLND+N N +G QELLAFLL+GL+EDLNRI DKP+IE PDSDGRPD ELADIWW NHL+RE SI+VALF GQ+KS+L CR C YESARFEPF FLQ LPLPED SV ++ ++ + S+R+ G + D++ ++ A E + SP+ + VD+G Sbjct: 69 GDGIVGLYNMGNTCYLNASIQCLSHTPILRDYFTSKAYLNDINTTNPMGEQGRLAQVSAVLINSLWKQYAQSATSSSTSKKGAAGVGYAPINAPAITPKSFKEALGKFNEQFAGNEQHDAQELLAFLLSGLSEDLNRIVDKPYIEAPDSDGRPDRELADIWWSNHLKREMSIIVALFTGQYKSLLTCRSCKYESARFEPFAFLQ-LPLPEDDNISVSLIYYPMNEEASVTQYSVRVRHDGTLLDVLMSLAEVQYADTEEGGSINNKESSEDASSPEKSDDVVDSG 352
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Match: W7TK56_9STRA (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK56_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.760e-56 Identity = 116/264 (43.94%), Postives = 153/264 (57.95%), Query Frame = 1 Query: 10 GDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKLGLQ-------------------------------------------------ELLAFLLNGLNEDLNRIADKPFIEQPDSDGRPDVELADIWWRNHLRREFSIVVALFAGQFKSVLACRECGYESARFEPFMFLQQLPLPEDTERSVVVVLVLLDGA-RMPVKCSLRLPKTGRVSDIIRAIVVTFNAPPIERTRCQRRSPKLMPNAVDNGDGAVVG 651 G GLVGL+NLGNTC++N+ +QCLSHTP+LT+YFLSRAYL DVN+ N LG Q ELLAFLL+ L+EDLNR+ K +IEQPDSDGRPD ELADIWW NH +RE S+V ALF GQ+K+ AC C Y SARFEPF LQ LPLPE+T R++ V+ V D + PV S+++ K G ++D+ A++ + ++ T ++ + V NG+ +G Sbjct: 10 GAGLVGLHNLGNTCFLNAPLQCLSHTPILTEYFLSRAYLRDVNLHNILGTQGRCAQLYATLLQELWAETGGVPRSVNPRAIRDLIGTQGLFTGHDQHDAQELLAFLLSTLSEDLNRVKKKSYIEQPDSDGRPDHELADIWWHNHFKRELSLVAALFTGQYKTTTACPTCNYVSARFEPFTVLQ-LPLPEETHRNISVLYVPADQEIQTPVHLSVQVSKQGSMADVKEAVIALLHKDGVQSTLRGKKRDDNGSSTVPNGEYRRIG 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9475.17222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9475.17222.1 >prot_H-paniculata_contig9475.17222.1 ID=prot_H-paniculata_contig9475.17222.1|Name=mRNA_H-paniculata_contig9475.17222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=293bp GATGDGLVGLNNLGNTCYINSSVQCLSHTPMLTDYFLSRAYLNDVNVENKback to top mRNA from alignment at H-paniculata_contig9475:928..7822- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9475.17222.1 ID=mRNA_H-paniculata_contig9475.17222.1|Name=mRNA_H-paniculata_contig9475.17222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6895bp|location=Sequence derived from alignment at H-paniculata_contig9475:928..7822- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9475:928..7822- >mRNA_H-paniculata_contig9475.17222.1 ID=mRNA_H-paniculata_contig9475.17222.1|Name=mRNA_H-paniculata_contig9475.17222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at H-paniculata_contig9475:928..7822- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |