mRNA_H-paniculata_contig9474.17221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI) HSP 1 Score: 161 bits (408), Expect = 1.590e-45 Identity = 89/211 (42.18%), Postives = 121/211 (57.35%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDK-----SNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSID---FGCRGSTT----LFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 Y+ G+LMYA GSRPDIA+A+ ++ P E + R+F YL LR+T+ +G G+ D DWAGD DR+ST+ YVFKL GGAISWCSRKQQ + S+ A Y+A A + ++L LL +D F S + DN+SA+ L K S H RTKHI +R H I+D ++ G L ++YV TGDQ+ D+ Sbjct: 54 YQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADV 264
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA) HSP 1 Score: 160 bits (404), Expect = 1.090e-44 Identity = 85/203 (41.87%), Postives = 129/203 (63.55%), Query Frame = 1 Query: 40 NSTEYRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 +ST ++ + GSLMY +T +RPDI YA+ +R ME P+ KR+F YL DL + ++ K NG + GF D+++AGD++DR+ST+ +VF + GAISW S+KQQ+VT S A +IAA + +AI+LR +L + F +G T + DN S I L++ H R+KHI +R H ++D + E I+ L Y ++ DQ+ DI Sbjct: 79 DSTYFKRIVGSLMYLTT-TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGVFYK-KINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADI 279
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 161 bits (408), Expect = 1.520e-44 Identity = 85/204 (41.67%), Postives = 126/204 (61.76%), Query Frame = 1 Query: 37 ANSTEYRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 A+ T ++ + GSL Y T +RPD+ Y++ +R ME+P+ + KRI Y+ I ++ + G GFVD+D+AGDV+DRKST+ YVF L GGA+SW S+KQ +VT S A ++AA +A++LR +LG I + TTLF DN S I L+K H R+KHI +R + ++D + E +++LK+ T DQL DI Sbjct: 151 ADPTMFKQLVGSLRYL-TATRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDI 352
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM) HSP 1 Score: 159 bits (403), Expect = 1.840e-44 Identity = 80/198 (40.40%), Postives = 123/198 (62.12%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVD 645 YR + G+LMY +T +RPDIA A+ + A+ E ++ KRI YL T DL + F + G + G+ D +WAGD++ R+STT YVF LNG AISW S++Q V S+ A Y+A +A +A++LR+LL + C G+TT F+DN+ I L K H RTKHI L+ H +++ +++ +++L+Y T + + D Sbjct: 94 YRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELI-GYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIAD 290
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: H3G557_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G557_PHYRM) HSP 1 Score: 157 bits (396), Expect = 2.020e-44 Identity = 79/192 (41.15%), Postives = 121/192 (63.02%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQT 627 YR + G+LMY +T +RPDIA A+ + A+ E ++ KRI YL T DL + F + G + G+ D +WAGD++ R+STT YVF LNG AISW S++Q V S+ A Y+A +A +A++LR+LL + C G+TT+F+DN+ I L K H RTKHI L+ H +++ +++ +++L+Y T Sbjct: 35 YRELVGALMYLATCTRPDIAQAVGEVAKFCEWYNKSHRVAAKRILKYLKTTQDLGLVFNGGTKGELI-GYADANWAGDLDSRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPT 225
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A8J5L2B5_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L2B5_ZINOF) HSP 1 Score: 160 bits (404), Expect = 1.250e-43 Identity = 86/199 (43.22%), Postives = 123/199 (61.81%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITF-RDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVD 645 YR + GSL+Y T +RPDI Y++ +R M +PS+ + KRI YL L I + ++K N V G+ D+DWAG ++DRKST+ Y+F L ISW S+KQ+ V+ S+A A YIAA DA +A++LR +L ++ TT+F DN S I +TK H RTKHI LR H I+D + + + LK++ T +QL D Sbjct: 195 YRSLVGSLIYL-TNTRPDIVYSVSLISRFMHEPSKLHYAAAKRILRYLQGTRKLGIKYVKEKENKLV--GYTDSDWAGSLDDRKSTSGYIFCLGSKIISWISKKQKTVSLSSAEAEYIAATDAACEAVWLRRILSDVEQKQEAPTTIFCDNNSTIAMTKNPVFHARTKHIELRHHFIRDLVSDKKIQLKFINTNEQLAD 390
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F) HSP 1 Score: 156 bits (394), Expect = 6.270e-43 Identity = 84/206 (40.78%), Postives = 134/206 (65.05%), Query Frame = 1 Query: 40 NSTEYRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLR---ELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 +ST Y+ + GSLMY T +RPDI YA+ +R ME P+ + KRI Y+ D + ++ + +G F G+ D+D+AGD++DRKST+ ++F LN GAISW S+KQQ+VT S+ A Y+AA + +A++LR E+LG++ +G TT++ DN S I L++ H R+KHI +R H ++D + ++L+Y ++G+Q+ DI Sbjct: 96 DSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGVFYK-REDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQ---KGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADI 296
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A4S4K685_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K685_9APHY) HSP 1 Score: 160 bits (404), Expect = 6.730e-43 Identity = 89/202 (44.06%), Postives = 118/202 (58.42%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRG---STTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 Y+ M GSLMYA TG+RPD+AY + ++ P + KR++ YL D RI + + + + G+VD DWA DV R+S T YVF L GGAISW S+KQ S A Y+AA DA +AI+LR LL +FGC S L DN+SAI L K + H RTKHI +R H I+ G ++++Y TGDQ+ DI Sbjct: 282 YQSMLGSLMYAMTGTRPDLAYTVGVLSQHSATPGNAHINAMKRVYRYLRGTLDYRIVYSSERHSDLI-GYVDADWAADVSSRQSITGYVFLLAGGAISWSSKKQSSTALSTTEAEYMAASDASKEAIWLRGLLH--EFGCLNPSYSVLLMIDNQSAIALVKNAEFHSRTKHIAIRYHFIRKIHDRGDILVEYCPTGDQVADI 480
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 154 bits (388), Expect = 6.850e-43 Identity = 88/201 (43.78%), Postives = 119/201 (59.20%), Query Frame = 1 Query: 52 YRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDL--RITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 YR GSLM+A+ +RPDIA+A+ +R + + KRI YL DL R TF D+ GF D+D+A DV+ RKSTT YVF + GAI+WCSR+QQ + S A Y+AA +A +AI+LR LL I + L+ DN+SAI L K H RTKHI +R H I++ Q G + ++YV++ DQL DI Sbjct: 37 YREAVGSLMFAAITARPDIAFAVNVVSRFQNNQGAPHWNAVKRIMRYLKHTKDLGIRYTFSDEP----VHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADI 233
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Match: A0A5B7B1Y6_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B1Y6_DAVIN) HSP 1 Score: 155 bits (393), Expect = 7.650e-43 Identity = 83/201 (41.29%), Postives = 126/201 (62.69%), Query Frame = 1 Query: 46 TEYRGMAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDLRITFRDKSNGHVFEGFVDTDWAGDVEDRKSTTRYVFKLNGGAISWCSRKQQLVTWSNA*AAYIAAGDAGNKAIYLRELLGSIDFGCRGSTTLFEDNKSAINLTKGSGAHCRTKHIRLR*HGIQDWIQEGILMLKYVQTGDQLVDI 648 T Y+ + GSLMY T +RPDI +A+ +R ME P+ KRIF YL + R+ +++ +F GF D+D+AGD +DRKST+RYVF + GAISW S+KQ +VT S+ A ++AA +AI+L+++L + F G T ++ DN SAI L+K H R+KHI ++ H ++D +G++ L Y ++ DQ+ DI Sbjct: 100 TLYKQIVGSLMYL-TATRPDIMHAVSVISRYMECPTEIHLLAAKRIFRYLKGTKEFRLFYKNGEKSDLF-GFTDSDYAGDSDDRKSTSRYVFMMGTGAISWSSKKQPIVTLSSTEAEFVAATARACQAIWLKKILKELHFKEDGPTHIYCDNSSAIKLSKNPVLHGRSKHIDVKYHFLRDLTNDGVINLIYCRSEDQIADI 298 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9474.17221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9474.17221.1 >prot_H-paniculata_contig9474.17221.1 ID=prot_H-paniculata_contig9474.17221.1|Name=mRNA_H-paniculata_contig9474.17221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp MAGSLMYASTGSRPDIAYAIYQAARRMEDPSREDSSTGKRIFHYLSTVPDback to top mRNA from alignment at H-paniculata_contig9474:7046..7693- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9474.17221.1 ID=mRNA_H-paniculata_contig9474.17221.1|Name=mRNA_H-paniculata_contig9474.17221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig9474:7046..7693- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9474:7046..7693- >mRNA_H-paniculata_contig9474.17221.1 ID=mRNA_H-paniculata_contig9474.17221.1|Name=mRNA_H-paniculata_contig9474.17221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig9474:7046..7693- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |