Homology
BLAST of mRNA_H-paniculata_contig9453.17199.1 vs. uniprot
Match:
A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)
HSP 1 Score: 360 bits (925), Expect = 3.670e-109
Identity = 284/703 (40.40%), Postives = 362/703 (51.49%), Query Frame = 1
Query: 145 MGVKGDLKEARACMQGGDPAQAYSMIQTILDSGAPELKDSQVMYAVLVTSGLTALAKEDHAASEDSFRRATTVVPDAPQ------------AWKGLIDCLERAG--KLEALPDALLPAARIAEGKGNHGRARSLRLRLAEVLEGLGRESEALDVLLVHLNNPAADKAISSAEADG-----AASEKLALVLHVAVLEEAVESTTVAQKAKKRVLKESGITSVNSEKASAGNMVVASAGGDCGGRLALLTFEYGAKAQVKDH---EEGGPVARTLEDAMRALEEAACS-VGDDPAAAXXXXXSQGQGSQA-----PSTARCQQLVERFVRIFVGKAVRRAECGSNGQ-----GWQELLIACTRCRSALGTYLATADDGWTSAATLLSSTY-YHNHPMSSSQN-------------LHELATENAKKQSN--------------PWLAAESCLYLAWVAWSAGDGTTAGTLLSAAQAARLRAR--SHGSAPPRAATARSPDGLSGPGSNWRELSLECLISEQLGYPGADRDPTVAEA----KLDTAVSATEASVSLRGPPLRERDLS---GSLALARASLLITMG--RLEEARSAVNVVVASNVGVSPTRGTITGAIGEQQAETGGENEGEAGAAGSIPTPKKENIGGGLTSPRLRCQALCVASDVDLAEGLEDDAKGKLREVLSTDGGFAGALTRLGWLLLGFAG 2037
MGVKGDLK ARA MQ G+P++A+SMIQ ILDS P+LKD+Q +YAVLVTSGL ALA +D A+E SFRRA +PDAPQ AWKGLIDCLER+G K+ ALP+ L AA IAEGKGN RAR LRLRL VL+ LGR+ EAL+ +L H+++P +A+++ DG AA+E+L+L L R L F+Y AKA KD E GG VA+ L DAM AL +A S G+D + G A P + LV RF R ++G+AV RAE + W+E+L AC R SA+ ++ DDGW + ATLL+STY NH ++ N L +A A+ ++ PWL +E+CL+LA +A AGD + A L A + + AR H + + A A LSGPGS+WRELSL CL+ E+LG G D P A A ++D A++A + S LRG P E D + G L LARASLL+ +G RLEEAR+AV + A V V+ + A I P P L C+ALCVASDVDLA G + AKGKLRE L + GF AL+RLGWLLLGF G
Sbjct: 1 MGVKGDLKAARARMQAGEPSEAFSMIQNILDSSHPDLKDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQPSYIFIPNPTPKAWKGLIDCLERSGAEKVAALPECLSRAAEIAEGKGNFARARGLRLRLGTVLDHLGRKEEALEAVLRHVDSP---QAMAATAGDGSGVPTAATERLSL-LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRATALAFDYRAKALAKDDDSAEGGGRVAKRLSDAMEALLDAGQSPAGEDGSGLMTREGGSDVGGDAGGALTPDNVVLKPLVARFCRAYLGRAVHRAEAAAAAAVEASTRWREVLAACARVESAVR--VSGWDDGWAATATLLASTYALPNHQRGAAGNGEDDNETTAALLELRRIARGGAQDEAGGDNADGAAAASPRRPWLKSEACLHLAGLALWAGDISQADAHLKTAAESAVAARIPPHRGSSTKQAGAPWAGALSGPGSDWRELSLRCLVDERLGDGGGD--PAAAAALGLGRVDAAMAAFDESSRLRGKPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARAAVEMASAGAVHVARQASAV--------------------ADDGICRP-----------PSLYCRALCVASDVDLAGGEREQAKGKLREALEAEAGFGDALSRLGWLLLGFGG 664
BLAST of mRNA_H-paniculata_contig9453.17199.1 vs. uniprot
Match:
D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)
HSP 1 Score: 302 bits (774), Expect = 8.690e-85
Identity = 252/652 (38.65%), Postives = 313/652 (48.01%), Query Frame = 1
Query: 145 MGVKGDLKEARACMQGGDPAQAYSMIQTILDSGAPELKDSQVMYAVLVTSGLTALAKEDHAASEDSFRRATTVVPDAPQAWKGLIDCLERAG--KLEALPDALLPAARIAEGKGNHGRARSLRLRLAEVLEGLGRESEALDVLLVHLNNPAADKAISSAEADGAASEKLALVLHVAVLEEAVESTTVAQKAKKRVLKESGITSVNSEKASAGNMVVASAGGDCGGRLALLTFEYGAKAQVKDHEEGGP-------VARTLEDAMRAL-EEAACSVGDDPAAAXXXXXSQGQGSQAPSTARCQQLVERFVRIFVGKAVRRAECGSNGQGWQELLIACTRCRSALGTYLATADDGWTSAATLLSSTYYHNHPMSSSQNLHELATENAKKQSNPWLAAESCLYLAWVAWSAGDGTTAGTLLSAAQAARLRAR--SHGSAPPRAATARSPDGLSGPGSNWRELSLECLISEQLGYPGADRDPTVAEA----KLDTAVSATEASVSLRGPPLRERDLS---GSLALARASLLITMG--RLEEARSAVNVVVASNVGVSPTRGTITGAIGEQQAETGGENEGEAGAAGSIPTPKKENIGGGLTSPRLRCQALCVASDVDLAEGLEDDAKGKLREVLSTDGGFAGALTRLGWLLLGFAG 2037
MGVKGDLK ARA MQ G+P++A+SMIQ ILDS P+L D+Q +YAVLVTSGL ALA +D A+E SFRRA +PDAPQAWKGLIDCLER+G K+ ALP+ L AA IAEGKGN RAR LRLRL VL+ LGR+ EAL+ +L HL++P +A+++A DG SGI++ +E RL+LL VA+ L DAM AL E A GDD +TA +L RI G A + E G + DG +A+ PWL +E+CL+LA +A AGD A L A + + AR H + + A A LSGPGS+WRELSL CL+ E+LG G D P A A ++D A++A + S LRGPP E D + G L LARASLL+ +G RLEEARSAV + A V V+ + AGA I P P L C+ALCVAS+VDLA G + AKGKLRE L + GF AL+RLGWLLLGF G
Sbjct: 1 MGVKGDLKAARARMQAGEPSEAFSMIQNILDSSHPDLNDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQAWKGLIDCLERSGAEKVGALPECLSRAAEIAEGKGNLARARGLRLRLGTVLDHLGRKEEALEAVLRHLDSP---EAMAAAAGDG-----------------------------------SGISTAATE------------------RLSLLXXXXXXXXXXXXXXXXXXXXXXXXRVAKRLSDAMEALLERGASGNGDD---------------DNEATAALLEL----RRIARGGA--QDEAGGD------------------------KTDGAAAASP-----------------------------RRPWLKSEACLHLAGLALWAGDVYQADAFLKTAAGSAVAARIPPHRRSSTKQAGAPWAGALSGPGSDWRELSLRCLVDERLGDGGGD--PAAAAALGLGRVDAAMTAFDESFRLRGPPDGEGDYADVLGRLGLARASLLLKLGGGRLEEARSAVEMASAGAVHVA--------------------RQASAGADDGICRP-----------PSLHCRALCVASEVDLAGGEREQAKGKLREALEAEAGFGDALSRLGWLLLGFGG 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9453.17199.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.67e-109 / Id = 40.40 Expect = 8.69e-85 / Id = 38.65 Sequence A0A6H5JAD5_9PHAE D7G059_ECTSI
Match Name E-value Identity Description
A0A6H5JAD5_9PHAE 3.670e-109 40.40 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D7G059_ECTSI 8.690e-85 38.65 Similar to Tetratricopeptide repeat protein 37 (TP... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 305.4 Seed ortholog evalue 6e-80 Seed eggNOG ortholog 2880.D7G059 Preferred name TTC37 KEGG ko ko:K12600 KEGG Pathway ko03018,map03018 KEGG Module M00392 Hectar predicted targeting category other localisation GOs GO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575 EggNOG free text desc. exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay EggNOG OGs KOG1127@1,KOG1127@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko03019 Exons 4 Model size 2038 Cds size 1893 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9453.17199.1
>prot_H-paniculata_contig9453.17199.1 ID=prot_H-paniculata_contig9453.17199.1|Name=mRNA_H-paniculata_contig9453.17199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=631bp
MGVKGDLKEARACMQGGDPAQAYSMIQTILDSGAPELKDSQVMYAVLVTS back to top mRNA from alignment at H-paniculata_contig9453:3542..8035+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9453.17199.1 ID=mRNA_H-paniculata_contig9453.17199.1|Name=mRNA_H-paniculata_contig9453.17199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4494bp|location=Sequence derived from alignment at H-paniculata_contig9453:3542..8035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GTGGGCCATTCCTGATCAGGACATAAACACCGCAGTGCACTGCTGGATAC
CTGTATTGTACCTGATAG GTGAGCTATGCGCCTTGTGAAAACTCAAATGC
ATTAGTGCTACGTGCCGCGCAATGTATGTGTAGCATGTACGCGGAAGAAC
TCATATTTCAAGATTTAAATCGAGTTTTACACATACAGACACCTGTGTAG
GGCAGTGCCTTGTACATAGTACACTGTACAGTGGCACCTGCTCTTTGGGA
GGGAGGGGAAATGGAGAACTGCTTTCATCTCCATCATAACGAAGTTAAGA
ACAACATACCCACTCACGAGTATCACCAGCAGCAGGAGGCTTTTTGCCCC
GGTTCGCTCTCATACTCGTTGTTCGAAATTACACATCCAGACGTACCTGT
ACTCCTCCTTCGTATGTGGTAACTTTTGTTGTCGGGAGAGATGACCGGGC
TGTGAAACGGCCACATCATATCCCGGCAGTTCCATAATAAAGAGCCTTCG
TCGATGGTAATGGTGCCTCTGGTTGGTGAATAGTTAAGACCCTCCACATG
GGAGGAGGTGGTGGAGATTTATGGACAGCTGTAAAACTGCGGTCAGACAA
CAACCAAGGATGGGCTTACCTATACCCTAAATAAGAAATAATATCGGCTG
TGTCGCGATAGTGCCCGATAACGACGATTGGGGCACAGTTACTTGCTAAT
AGTACTACCCTACCCTTATTCTACTACCCTAACCCTACCATTGGGGCACA
GCCGAATTGTGTTGCTGAACATAGCGACCACAGCGTACTTGAAAAAAGAA
CAGCCCGCAAATGAGTCGGGACCCGTCCGTCCCCAAGGCTGTGCACAGTG
CACGTGCAATATCCATTCGGGTCATGCCTTATATTACGTGATATAGGACA
CTCGTCAACGTTGGAATTGACAAAGGTAAGGTATACTCTGACGGTGGTTT
TTCTGCATTCCGTGGTTCATTCCGTGGTTCAGCAATTCTGCTGTATAAGT
GCATTTTTTTGGCAAGGTTTTCAAAATATAGAAATGTGAATCCTACCCCT
AATCCAATGTACATCCTCTTGACCGTAATAATTAGGCCCGTCCGCTGCTT
GTCACAGTCCGTTGCGATTTCGAAATCCGTTTTGTTTTTCGTTTTGCATC
TCCAGAAAACCAGGGAAAACCTCATCTACGAATCTTTGCTGATATTTTTA
GTTCTGTAATATCCAATACTTGATCTGGTTATACGCAATCCTTGCATCAA
GCAGGTTGACGGGACGGCCGAGTAATTTACAACCTGGCGAACCGACAGCA
ACCAGAAAAACAGAGACAGAGACAATAACG ATGGGGGTGAAAGGCGACCT
CAAGGAAGCAAGAGCCTGCATGCAGGGGGGGGACCCTGCTCAGGCCTACT
CCATGATCCAAACCATACTGGACAGTGGGGCACCCGAGCTAAAAGACTCA
CAAGTTATGTACGCCGTGTTGGTAACGTCGGGGCTGACAGCGCTTGCGAA
GGAAGATCACGCGGCATCTGAAG GTGTGTGTCATGTGTTGATCTTCCCGC
GATCGAGGTATTTGTCATTTAGGAGGATGACACTTTTTTTCTTCGCTCCT
GACCGCGGTTAGCCACCGAACAGTATGAATCACGTTAGCGCCGAATGTGG
TTGCTTTTCCTTGGTCCGACACGTTCATGAAGTATTCTATTAGCATATTT
TGCTTACATAGACAATCATTTTCAACGTGAGAAACAGGTTGCCCCTTATC
ATGGGAGGATACCTGCTATGCTATGCTGTGCTGTGCTTGCTTCTATATTC
TGTCGATCCTTCGGATCCAGGCTGTTTTTTTCTGTTCTCTGTTTAGTTCG
GGTTTTGCTTGCAATGTTATGCTCTGTCCCGAGAGCTCTCCTAGACCATC
CACGGTATTGAGGCCGGTTTACCACTTGTCGTAAAGCTATGGTTGACAAG
TATTTTGTTGCATGATTCACGCTCCGCCATACCCCCGACGCGAGCAGAAC
CAATGCCGCTTTCCAAAGTTAATGCTGAGCCCAATCCTAAAAGCTGAACC
TCCCTCAGAAGGGAGTATAGTTTACTTTTCTTCCGAAAACTATGGTTGAC
GAAGCGGATACAAATTCGCCGTAAGAGAAGATCCAGAAATTTACCAGAAC
GTTCTGGTCTGCTGCCGTCCTAAGCAGCCCTGGTACGCGCGCAGCACGTG
TTTTTCTTTATCGCAGATCGTGGCGCCGTTGTAAATCTCTGGCCGCCGTG
CCTTGTGCATCGTCACTACCCAGTAATAAACACTACTCCTTTTTCACACG
GCGGTCACAGATAGCTTTCGGCGCGCCACGACAGTTGTACCTGATGCCCC
GCAGGCGTGGAAAGGGCTAATTGACTGCCTTGAGCGTGCGGGAAAGCTGG
AGGCCCTCCCCGACGCCTTGCTACCGGCGGCGCGCATCGCGGAGGGCAAG
GGAAACCACGGGAGGGCTCGCTCTCTGCGGCTGCGGCTTGCCGAAGTGCT
GGAGGGCCTGGGCAGAGAGAGTGAAGCTCTCGATGTGTTGCTGGTACACC
TGAACAACCCTGCAGCTGACAAGGCGATCTCGTCAGCGGAGGCGGACGGT
GCTGCTTCCGAAAAGTTGGCGTTGGTGCTCCATGTTGCGGTGCTGGAGGA
GGCTGTTGAGAGCACCACAGTGGCCCAGAAAGCGAAAAAGCGAGTGCTCA
AGGAGAGCGGGATTACTAGTGTAAATAGTGAGAAGGCCTCTGCTGGTAAT
ATGGTAGTGGCGTCGGCTGGAGGAGACTGCGGCGGGCGGTTGGCGTTGTT
AACGTTCGAGTATGGAGCTAAAGCGCAAGTAAAGGATCACGAGGAGGGAG
GACCCGTAGCGAGGACGTTGGAAGACGCGATGCGAGCGCTGGAAGAAGCG
GCGTGCTCTGTTGGTGATGATCCAGCAGCAGCAGCAGCAGCAGCGTCGTC
TCAAGGTCAAGGTTCTCAAGCCCCGTCGACAGCAAGGTGTCAGCAACTAG
TAGAGCGTTTCGTTCGCATTTTTGTTGGGAAAGCAGTACGCCGAGCGGAG
TGTGGCAGCAACGGCCAAGGTTGGCAAGAGCTTCTGATCGCGTGCACCCG
GTGTAGATCAGCTCTGGGCACGTACCTCGCCACCGCAGACGACGGTTGGA
CTTCAGCGGCCACCCTTCTCTCATCGACGTATTATCACAATCACCCGATG
TCCTCCTCTCAAAATCTCCACGAACTGGCTACGGAGAACGCTAAAAAACA
GAGCAACCCTTGGCTGGCGGCGGAGTCATGCCTGTATCTCGCGTGGGTAG
CTTGGTCAGCCGGCGATGGTACCACGGCGGGTACTCTCCTAAGCGCAGCA
CAAGCGGCACGACTACGAGCTCGTTCACACGGGTCAGCACCACCCCGTGC
TGCTACTGCCAGATCTCCAGACGGGCTGTCAGGCCCTGGCAGCAACTGGC
GCGAACTTTCGCTCGAGTGTCTCATCAGCGAGCAGTTGGGGTACCCGGGG
GCCGACAGAGACCCCACGGTGGCCGAAGCCAAGCTCGACACGGCTGTCTC
CGCGACGGAGGCATCGGTAAGCTTGCGTGGTCCGCCGCTGCGCGAGCGAG
ATCTTTCGGGTAGCTTGGCTCTGGCGAGGGCGTCTCTGTTGATCACTATG
GGGCGGCTAGAGGAAGCTCGTTCCGCTGTGAACGTTGTCGTTGCCTCCAA
CGTAGGAGTGTCGCCTACTAGGGGTACCATCACCGGGGCGATCGGCGAGC
AGCAAGCCGAGACTGGAGGTGAAAACGAGGGCGAAGCAGGAGCAGCGGGA
TCCAT GTAAGTCTCTTATGCCACCGGCACGCTTTATATTGGATATGTATT
TGTGTTGGTATTGGCACTTATATTTGTGTCCCCTAACCCTGTATTCGTCT
TGATATTTGTGTACCCTAACTCTGTATTCGTCTTGATATTTGTGTACCCT
AACTCTGTATTCGTCTTGATATTTGTGTACCCTAACTCTGTATTCGTCTT
GATATTTGTGTACCCTAACTCTGTATTCGCCTTGGTGTTTTACTTTTACT
TATTTTTTCGCATAAAAAAACAAAAAAAAACGGTGTTACCTAGCAGATTT
CGCATATGTCCATATTTTTCCACAAATAGTTATTCCGTGTTTGCCCGGCT
AATGACCAATGAGTATTGCTGGCATAAATTGGCACGTATTTCGATGTATT
TTGCCAGCATATACGAGGTACACTAAACACTCAGCACGCCTATTTATTTT
CAACGGTTTTTTCTCTTACGTATGGAACAAACATAGCAGACCTACGCCCA
AGAAGGAGAATATTGGCGGGGGCCTAACCAGCCCTCGCCTTCGCTGCCAA
GCACTGTGCGTGGCCTCGGATGTGGATCTCGCCGAAGGCTTGGAGGATGA
CGCCAAGGGTAAGCTCAGAGAGGTACTGAGCACGGACGGCGGGTTTGCCG
GGGCGTTGACCCGGCTGGGCTGGCTGTTGCTTGGATTTGCTGGG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9453:3542..8035+
>mRNA_H-paniculata_contig9453.17199.1 ID=mRNA_H-paniculata_contig9453.17199.1|Name=mRNA_H-paniculata_contig9453.17199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3786bp|location=Sequence derived from alignment at H-paniculata_contig9453:3542..8035+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top