mRNA_H-paniculata_contig9449.17198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Match: D7FQV8_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV8_ECTSI) HSP 1 Score: 276 bits (705), Expect = 8.170e-75 Identity = 224/680 (32.94%), Postives = 316/680 (46.47%), Query Frame = 3 Query: 3 RTAALLALIALSVAGSGTIMPALPQPFRTLAPGDTAGSNAGTLREWAVFVHEGLMLESLADHFEDFGSAAACMLVVTLVSLLVYPLRAMMSSCTTSSYSSAGKIQKPSILWTLCCGAVAVGLPAMVVWAVAIWAAGTSHWGLASGFCVGLHCCALTLKSWAFVQAIGFNDCTTDGSDGXXXXXXEVGSDVATVVYREGRYLSGVQVEANGNEEAMTNREDDTAHGNNNVTSLYKDTVTTAP--DDPTLRKNNDVDSKKGGACARASAHAGKTIAAVASASADSPPLPSTSPLRPATTNQLSFQEFLFFQLLAPSLVCEPGWLKRPSRRAPRPCAALTEFLHAVLTYLALHAYSVALFAPCFRILSTAWSTTTTDASGSGVGDGHQHMWALNVEGLEALRGSGGAGWLVAAVAGDWDGTVNTTTVVGGMAVQAGEVLMAPL------SEGAWAAVVAVAAMCVMYSFGPLNHYLLFYAFFHCILLGSAELWGYPDRDFYGPWWLALDHVKDYFRTWSAPVYRWLSVCIQRPLLKAA---AAAXXXXXXXXXNDK-------------------SSTSADRNGKA---------PSWAVNASVVLVFFVSGLIHEAAGYLGMRRTIFPMNTFFLLLSASMFPTWEIIFPLKDEASSLTPPPSSRPIAPRNGARAGVTATNGD 1925
RT+ALL ++A+S+A SG D +G ++ + EW V++ +G+ L L HF SA CM++ T+ S LVYP+ C+ ++ + + + T +A +P+M VW WG+ASG CVGL C ALTLKS +FVQ + +A E +GV A+ + A A G ++ + + P + P+ N D CA A+ PA L+F+EF FF +LAPSLVC P +LK +RR PR AA +EFLHA LTY+A+H ALFAP R+L+ A SG G + WA LR + G+GW + D ++ + GG + G V P G VA+AA ++ F P+ H+L+FYAFFH + LG AEL+GYPDR+ YGPWWL +D V+DYFR WSAPV+RWLS +QRP+++ A DK TS+ GKA W + ASVV F VSG++HEA G++ MRRT++P +TFFL ++ASM P W+ +FP+ + S+ P +RP R A + A GD
Sbjct: 37 RTSALLVVVAMSIAASGA---------------DGSGGSSSSA-EWGVYLAKGMHLALLQKHFGGMVSALGCMVMGTVTSFLVYPIY---QRCSPAAIQNPRALPCRRVSSTTA-KTIAAAVPSMAVWXXXXXXXXXXXWGIASGLCVGLQCAALTLKSVSFVQKA---------------RPVAAEAAIAVAAAHEDLDAAGVAENADEGDRAAA------ASGKLAISPARRSVLQRDPRSNSPSSTANGD------DGCAHAA--------------------------NPA----LTFREFAFFLVLAPSLVCRPQYLKSGARRPPRVAAAASEFLHAGLTYVAVHVACSALFAPALRVLAEALH------SGGVAGWADEEDWA-------ELRRTDGSGWWLH----DSSRSIGSLFASGGGSCVGGGVGCVPGWTFADDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIEVGQREALRHRRRRVAREEDKPPATNGNSGGSNGVHDYRPKGTSSTTGGKARHGADAGIVTRWWL-ASVVCSFLVSGVVHEAVGFVAMRRTVWPFSTFFLAVTASMAPFWDTLFPVVADTST----PGTRPTGRR--AFTSIAAAGGD 615
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Match: A0A6H5KXI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI3_9PHAE) HSP 1 Score: 213 bits (542), Expect = 2.980e-55 Identity = 186/566 (32.86%), Postives = 253/566 (44.70%), Query Frame = 3 Query: 3 RTAALLALIALSVAGSGTIMPALPQPFRTLAPGDTAGSNAGTLREWAVFVHEGLMLESLADHFEDFGSAAACMLVVTLVSLLVYPLRAMMSSCTTSSYSSAGKIQKPSI-----LWTLCCGAVAVGLPAMVVWAVAIWAAGTSHWGLASGFCVGLHCCALTLKSWAFVQAIGFNDCTTDGSDGXXXXXXEVGSDVATVVYREGRYLSGVQVEANGNEEAMTNREDDTAHGNNNVTSLYKDTVTTAP--DDPTLRKNNDVDSKKGGACARASAHAGKTIAAVASASADSPPLPSTSPLRPATTNQLSFQEFLFFQLLAPSLVCEPGWLKRPSRRAPRPCAALTEFLHAVLTYLALHAYSVALFAPCFRILSTAWSTTTTDASGSGVGDGHQHMWALNVEGLEALRGSGGAGWLVAAVAGDWDGTVNTTTVVGGMAVQAGEVLMAP---LSE---GAWAAVVAVAAMCVMYSFGPLNHYLLFYAFFHCILLGSAELWGYPDRDFYG----------------------------PWWLALDHVKDYFRTWSAPVYRWLSVCIQRPLLK 1577
RT+ALL ++A+S+A SG GD GS EW V++ +G+ L L HFE SA CM + T+ S LVYP+ C+ ++ IQ P + + +A +P+M VWA WG+ASG CVGL C ALTLKS +FVQ V ++ A V L +V AN ++ A G ++ + + P + P+ N D GGA A PA L+F+EF FF LAPSLVC+P +L +RR PR AA +EFLHA LTY+A+H ALFAP R+L+ SG G + WA LR + G+GW + D G++ + GG G V P S+ G VA+AA ++ F P+ H+L+FYAFFH + LG AEL+GYPDR+ YG PWWL +D V+DYFR WSAPV+RWLS +QRP+++
Sbjct: 37 RTSALLVVVAMSIAASG---------------GD--GSGRSNSAEWGVYLAKGMHLTLLQKHFEGIVSALGCMAMGTVTSFLVYPIY---QRCSPAA------IQNPRAPPCRRVSSATAKTIAAAVPSMAVWAXXXXXXXXXXWGVASGLCVGLQCAALTLKSVSFVQKA-----------------RPVAAEAAIAVVAAHEDLDAARVAANADDGDRAAA----ASGQLAISPARRSVLQGDPRSNPPSPTANGD----DGGARAA----------------------------NPA----LTFREFAFFLALAPSLVCQPQYLASGARRPPRVAAAASEFLHAGLTYIAVHVACSALFAPALRVLAGVLH------SGGVAGWADEEDWA-------ELRRTDGSGWWLY----DSSGSLGSLFASGGGGCVHGGVGCGPGWTFSDDGTGHPGLTVAIAACLGVFVFSPMMHFLMFYAFFHSVCLGCAELYGYPDRNTYGELSFSLVGDRFTPSAGLEGQALRHDSAGPWWLVVDDVRDYFRLWSAPVHRWLSESVQRPMIE 502
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Match: D7FQW2_ECTSI (Sterol or diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW2_ECTSI) HSP 1 Score: 206 bits (523), Expect = 4.310e-51 Identity = 237/836 (28.35%), Postives = 331/836 (39.59%), Query Frame = 3 Query: 3 RTAALLALIALSVAGSGTIMPALPQPFRTLAPGDTAGSNAGTLREWAVFVHEGLMLESLADHFEDFGSAAACMLVVTLVSLLVYPLRAMMSSCTTS-SYSSAGKIQKPSILWTLCCGAVAVGLPAMVVWAVAIWAAGTSHWGLASGFCVGLHCCALTLKSWAFVQAIGFNDCTTDGSDGXXXXXXEVGSDVATVVYREGRYLSGVQVEANGNEEAMTNREDDTAHGNNNVTSLYKDTVTTAPDDPTLRKNNDV--DSKKGGACARASAHAGKTIAAVASASADSPPLPSTSPLRPATTNQLSFQEFLFFQLLAPSLVCEPGWLKRPSRRAPRPCAALTEFLHAVLTYLALHAYSVALFAPCFRILSTAWSTT--------------TTDASGSGVGDGHQHM-----------------WALNVEGLEALRGSGGAGWLVAAVAGDWDGTVNTTTVVGGMAVQAGEVLMAPLSEGA----WAAVVAVAAMCVMYSFGPLNHYLLFYAFFHCILLGSAELWGYPDRDFYGPWWLALDHVKDYFRTWSAPVYRWLSVCIQRPLLKAAAAAXXXXXXXXXNDKSSTSADRNGKAP------------------------------SWAVNASVVLVFFVSGLIHEAAGYLGMRRTIFPMNTFFLLLSASMFPTWEIIFPLKD---EASSL-------------TPPPSSRPIAPRNGA----RAGVTATNGDVRVLSPGSDGDGGSVGDESLTKSLAIEESSAGEKEERENVSGRSLRRREYKGDVGLD---------------RGLGVVIFCFFSSTAMEALYDFLAWQWWRKAFLTD 2201
RT ALLAL A S SG P+ F T A + + EW F+ +GL L+ LA HFE G A ACM V+ LV+ L YPL +++ ++ AGK Q S + G + ++ + L S V + TL W N D VG A + + + Q N T +E A G AP R DV D G PPL L+F EFLFF L APSLVCEP +L++ +RRAP P A +EF HAVL ++ALHA A FAP R+++ A +T +D G G GDG WA EG+ GSGG W + + DG T A+ E L + GA W + A +A+ M F P+ H++ FY F+HC+ LG AELWGYPDR+FYGPWWL + +R WS PV+RW+S CI RP++ AA + + K+ +W ++ F S L+HEA ++ MRRT +P++TF L+LS + W+ ++P++ E++++ T PP+ + + P + A + G TAT DV S + G++ D S KS + + + E+ S G G+D RG G V F +S M DFL WQWWR L +
Sbjct: 41 RTVALLALAACSAKFSGAAAPSAD--FETPAA-------STVVDEWTAFLTKGLALDLLARHFEGIGKALACMFVMALVATLAYPLHLLITRPPSAVPAGGAGKGQAESERRS-------PGSQRRQLSSLXXXXXXSPFLPLLSAMVVA----STTLPIWTLAVWGSVN------LDWGLASGLSVGLLSACLSLKSASFA---QSWCCFNAPVTTAKEAAEATG--------------APSGGETRSREDVCGDGDLAG-----------------------PPL-------------LTFGEFLFFILAAPSLVCEPEFLRKHARRAPCPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVVAAAVFSTPSPSLVGESAQAALASDFRGCGSGDGEHTCGGSPFNGATIGWVDCVGWA-GAEGIHTAGGSGG--WFFSLLL---DGGGPETA-----AISYFESLFCGGAGGAGLAGWWGIAAASAL-AMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPVVGHKNAAFSQPGRSGGGVRRGLAGTLCRKSEEXXXXXXXXXXXXXXXXXXXXXXXQTQRRWTWRRLLALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVRSIISESAAVSGASGEDSGDRHGTGPPAEQAVLPSSSAATRSQPGATATAADVSCGSTVVETSDGTLEDHS-EKSYVVVDQARDLGEQHAITSKNGSDSCGTGGGGGVDGAGRVSNTKKAGREWRGWGAVAFFEGASLVMGLAVDFLMWQWWRHTLLYE 784
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Match: A0A6H5J9L7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9L7_9PHAE) HSP 1 Score: 206 bits (523), Expect = 4.750e-51 Identity = 196/700 (28.00%), Postives = 281/700 (40.14%), Query Frame = 3 Query: 3 RTAALLALIALSVAGSGTIMPALPQPFRTLAPGDTAGSNAGTLREWAVFVHEGLMLESLADHFEDFGSAAACMLVVTLVSLLVYPLRAMMSS-------------------CTTSSYSSAGKIQKPSILWTLCCGAVAVGLPAMVVWAVAIWAAGTSHWGLASGFCVGLHCCALTLKSWAFVQAIGFNDCTTDGSDGXXXXXXEVGSDVATVVYREGRYLSGVQVEANGNEEAMTNREDDTAHGNNNVTSLYKDTVTTAPDDPTLRKNNDVDSKKGGACARASAHAGKTIAAVASASADSPPLPSTSPLRPATTNQLSFQEFLFFQLLAPSLVCEPGWLKRPSRRAPRPCAALTEFLHAVLTYLALHAYSVALFAPCFRILSTAWSTTTTDA---------------SGSGVGDGHQHMWALNVEGLEALRG-------SGGAGWLVAAVAGDW------DGTVNTTTVVGGMAVQAGEVLMAPLSEGA----WAAVVAVAAMCVMYSFGPLNHYLLFYAFFHCILLGSAELWGYPDRDFYGPWWLALDHVKDYFRTWSAPVYRWLSVCIQRPLLKAAAAAXXXXXXXXXNDKSSTSADRNGKAP---------------------------------------SWAVNASVVLVFFVSGLIHEAAGYLGMRRTIFPMNTFFLLLSASMFPTWEIIFPLK 1832
RT ALLAL A S SG P+ F T A + + +W F+ +GL L+ LA HFE G A ACM V+ LV++L YPL +++ C+ S S + A+ V + +WA+A+W + WGLASG VGL L+LK+ +F Q+ + V T +E +G E + R+DD A PPL L+ EFLFF L APSLVCE +L+ +RRAPRP A +EF HAVL ++ALHA A FAP R+L++A + + + GS G G + + A+ G +G G A +G W DG + T V E L + GA W A+ A +A+ M F P+ H++ FY F+HC+ LG AELWGYPDR+FYGPWWL + +R WS PV+RW+S CI RP++ +AA + A + + P +W ++ F S L+HEA ++ MRRT +P++TF L+LS + W+ ++P++
Sbjct: 41 RTVALLALAACSAKFSGAAAPSAR--FETSAA-------STVVDDWTAFLTKGLALDLLARHFEGIGKALACMFVMALVAILAYPLHLLITRSPSAVPAGGAGTGQAESERCSPGSQRRQLSSLSSSSPFLPLLSALVVASTTLPIWALAVWGSVNLDWGLASGLSVGLLSACLSLKNASFAQS-----------------WCRFNAPVTTA--KEAAETAGAPGGGARPREEVC-RDDDRA---------------------------------------------------------GPPL-------------LTLGEFLFFILAAPSLVCEQEFLRERARRAPRPGRAFSEFSHAVLVFVALHAACSAFFAPVMRVLASAVFSPPSPSLAAESAHEALACDFRGGSSGGSGGGEYTCGGLPSIGAMIGWVDCVGWAGAEGIHTAGRSGGWFFSLLLDGGGSETAVASYF-----ESLFCGGAGGAGLAGWWAIAAASAL-AMLVFSPMVHFMAFYGFWHCVCLGCAELWGYPDRNFYGPWWLLAEEPDTMYRLWSTPVHRWVSSCIYRPIVGHKSAAIPQPGCSSGGVRRGL-AGTSCREPEEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRWTWRRLMALTSAFLFSSLVHEAVTFVAMRRTCWPVSTFSLVLSIFVISGWDAMYPVR 634
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Match: D7FUK9_ECTSI (Sterol or diacylglycerol O-acyltransferase, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK9_ECTSI) HSP 1 Score: 197 bits (500), Expect = 6.840e-50 Identity = 122/349 (34.96%), Postives = 177/349 (50.72%), Query Frame = 3 Query: 879 ATTNQLSFQEFLFFQLLAPSLVCEPGWLKRPSRRAPRPCAALTEFLHAVLTYLALHAYSVALFAPCFRILSTAWSTTTTDASGSGVGDGHQHMWALNVEGLEALRGSGGAGWLVAAVAGDWDGTVNTTTVVGGMAVQAGEVLMAPLSEGAWAAVVAVAAMCVMYSFGPLNHYLLFYAFFHCILLGSAELWGYPDRDFYGPWWLALDHVKDYFRTWSAPVYRWLSVCIQRPLLKAAAAAXXXXXXXXXN---DKSSTSADRNGKAPSWAVNASVVLVFFVSGLIHEAAGYLGMRRTIFPMNTFFLLLSASMFPTWEIIFPLKD----EASSLTPPPSSRPIAPRNGARAG 1904
A L+F E+LFF L+PSLVCE +K +RR RP A +EF HAVLT+L H ++ AP R+ +A S + + +G WA L +GGAGW W T + + GG +G L ++ G + + +++ H+++FYAF+HCI LG AELWG+PDR+ YG WWL D +D+ R WS PV+RWLS C+ P+L+ + + + S+ +A+ G W +V+ F VSG+ HEA Y+ MR T +P NTF L + + W+I+FPL D S PP + ++PRN AG
Sbjct: 174 AGPRSLTFGEYLFFLFLSPSLVCEVRLMKVSARRRSRPLRAASEFFHAVLTFLCAHCVVGSILAPSLRLFFSAVSPGWVEGAAAG--------WA-------ELEAAGGAGWP------SW--TAGSALLAGGDKEDSGTRLGQLVALGCF--------LWMLFVVSSALHFMVFYAFWHCICLGMAELWGFPDRNLYGCWWLLFDEPRDFLRMWSTPVHRWLSTCVHWPMLELCSTSDEGVDGTKSPPSAELSTATAEVAGDPSKWTWVPAVLATFVVSGVFHEAVVYIAMRGTCWPFNTFLLCVGGVLVIFWDIVFPLPDLKPSSESEGGSPPQTATLSPRNEGGAG 491 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9449.17198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9449.17198.1 >prot_H-paniculata_contig9449.17198.1 ID=prot_H-paniculata_contig9449.17198.1|Name=mRNA_H-paniculata_contig9449.17198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=716bp MPALPQPFRTLAPGDTAGSNAGTLREWAVFVHEGLMLESLADHFEDFGSAback to top mRNA from alignment at H-paniculata_contig9449:883..9225+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9449.17198.1 ID=mRNA_H-paniculata_contig9449.17198.1|Name=mRNA_H-paniculata_contig9449.17198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8343bp|location=Sequence derived from alignment at H-paniculata_contig9449:883..9225+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9449:883..9225+ >mRNA_H-paniculata_contig9449.17198.1 ID=mRNA_H-paniculata_contig9449.17198.1|Name=mRNA_H-paniculata_contig9449.17198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4296bp|location=Sequence derived from alignment at H-paniculata_contig9449:883..9225+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |