mRNA_H-paniculata_contig9422.17180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: D7G860_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G860_ECTSI) HSP 1 Score: 115 bits (288), Expect = 5.280e-28 Identity = 103/131 (78.63%), Postives = 105/131 (80.15%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVKAKDPNYPSFQRFWASRC 394
MADMAWNIKCREED+ F XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEV GLMLLAMLSSTFMLVAIMKYDVKAKD +YPSFQRFWASRC
Sbjct: 9 MADMAWNIKCREEDMEFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEV----------------------GLMLLAMLSSTFMLVAIMKYDVKAKDRHYPSFQRFWASRC 117
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A6S9GQE6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9GQE6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 6.250e-22 Identity = 83/157 (52.87%), Postives = 106/157 (67.52%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVKAKDPNYPSFQRFWASRCSLSLSLSLSRKAV---LFRCLDGNLG 463
MADMAW +KCREED XXXXXXXXXXXXXXXXXXXX V++ SALIAGF++V +VEV +P N++PVLL++F T+A+VVGLML AML+STFMLVAI++YD ++ F +FW +RC +L A LF C+ +G
Sbjct: 24 MADMAWEMKCREEDXXXXXXXXXXXXXXXXXXXXXXXAQQLKA-------VSNQSALIAGFSMVVLVEVQIPKNMNPVLLVTFGCTTAAVVGLMLTAMLNSTFMLVAILRYDCVQREV---PFAKFWRTRCESDWKFALRAFAYGVPLFLCVLAQIG 170
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A836C9P0_9STRA (Calcium release-activated calcium channel protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9P0_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.020e-21 Identity = 59/151 (39.07%), Postives = 81/151 (53.64%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVK-AKDPNYPSFQRFWASRCSLSLSLSLSRKAVLFRCLD 451
+ADMAW +KCREED+ + +A LSAL+AGFALVAM ++ +PD V+ LL+SF +A+ VG+ L+AMLSST +LVA++KYD K A + P F FW++ C LS FRC +
Sbjct: 2 VADMAWGMKCREEDLEYRRLEMEWRKHDLWCRWVDEQWHAMEEKAKQLEQIAQLSALLAGFALVAMCQMQIPDGVNGWLLVSFGTVTAAAVGVPLIAMLSSTLVLVAVIKYDPKVAVNAACPDFGTFWSTHCEADWRLS-------FRCFN 145
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A7S2S1Q7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1Q7_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.280e-20 Identity = 72/163 (44.17%), Postives = 101/163 (61.96%), Query Frame = 2 Query: 8 DMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVKA--------KDPNYPSFQRFWASRCSLSLSLS---LSRKAVLFRCLDGNLG 463
DMAW+++CR+ED+ XXXXXXXXXXXXXXX ++ LSALIAGFA++ MVE+ +PD++ LL+ F TSA VVGLML+AMLSST +L+AI+K+D K+ + P + SF+ FW + C ++ ++ LF C+ LG
Sbjct: 16 DMAWDVRCRDEDMVQRATENHRRRIXXXXXXXXXXXXXXXEKAEQLKAISHLSALIAGFAMIVMVEIQLPDDLHLGLLVIFGGTSAGVVGLMLIAMLSSTMVLIAILKFDCKSVADTASSGRPPRFQSFEEFWTTLCEDDWQMAYQAFTKGVPLFMCVLAQLG 178
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A7S4NBN3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NBN3_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.890e-19 Identity = 74/158 (46.84%), Postives = 96/158 (60.76%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYD-VKAKDPNYPSFQRFWASRCSLSLSLSLSR---KAVLFRCLDGNLG 463
MADMAW +KCREED+ XXXXXXXXXXXXXX V+ SALIAGF++V +VEV +P ++ PVLL+ F T+A VV LML++ML+STF+LVAI++YD V+ + P F FW RC +L LF C+ +G
Sbjct: 13 MADMAWEVKCREEDMK-------QRALENXXXXXXXXXXXXXXKAQQLKAVSHQSALIAGFSMVVLVEVQIPSDLHPVLLVMFGCTTAGVVSLMLVSMLNSTFVLVAILRYDCVRREAP----FAEFWRKRCESDWKFALRAFGYAVPLFMCVLAQIG 159
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A6U0JNC6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JNC6_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.680e-18 Identity = 73/158 (46.20%), Postives = 98/158 (62.03%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYD-VKAKDPNYPSFQRFWASRCSLSLSLSLSRKAV---LFRCLDGNLG 463
MADMAW +KCREED+ XXXXXXXXXXXXXX V+ SALIAGF++V +VE+ +P ++ P LL++F T+A VV LML+AML++T++LVAI++YD VK + P F FW RC L+L + LF C+ +G
Sbjct: 14 MADMAWEVKCREEDMK-------QRALENXXXXXXXXXXXXXXKAQQLKAVSHQSALIAGFSMVVLVEIQIPTDLSPGLLVTFGCTTAGVVSLMLIAMLNATYILVAILRYDCVKRETP----FSDFWRKRCESDWQLALKAFGLGVPLFLCVLALIG 160
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: A0A7S1BSJ4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BSJ4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.800e-14 Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYD-VKAKDPNYPSFQRFWASRCSLSLSLSLSRKAV---LFRCLDGNLG 463
+ADMAW +KCREED+ XXXXXXXXXXXXXXXXX V+ LSALIAGFA+V +VE+++P+N LL++F ++ V+ LML+AML++ MLVAI KYD ++ + P F FW RC +L + +F C+ G +G
Sbjct: 11 VADMAWEVKCREEDMK-------QRSXXXXXXXXXXXXXXXXXKSQQLKAVSHLSALIAGFAMVVLVEISIPENFPGPLLMAFGVATSIVISLMLVAMLNACLMLVAINKYDCIRREIP----FNVFWRKRCETDFVYALRAFLLGVPVFICVLGLVG 157
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: B8BUZ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUZ2_THAPS) HSP 1 Score: 72.8 bits (177), Expect = 8.220e-12 Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVKAKDPNYPSFQRFWASRCSLSLSLSL 418
MADMAW +KCREED+ XXXXXXXXXXXXXXXXXXXX SAL+AGF++V +VE +P +++ LL F +A V+ LML++ L++T+MLVAI++YD ++ F FW RC ++L
Sbjct: 10 MADMAWEVKCREEDMK-------QRALENEXXXXXXXXXXXXXXXXXXXXXXXXSALVAGFSMVVLVESNIPPDINGALLTLFGGVTACVIALMLVSTLNATYMLVAILRYDCVNREV---PFDEFWRKRCEPDWKMAL 138
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: K0S0L8_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0L8_THAOC) HSP 1 Score: 70.9 bits (172), Expect = 5.310e-11 Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 2 Query: 2 MADMAWNIKCREEDINFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKYDVKAKDPNYPSFQRFWASRCSLSLSLSL 418
MADMAW +KCREED+ XXXXXXXXXXXXX VA+ AL AGF++V +VE ++P+ ++ LL F + A + L L++ L+ST++LVAI++YD +D F FW RC ++L
Sbjct: 10 MADMAWEVKCREEDMK-------QRALENEXXXXXXXXXXXXXKAQQLQVVANQGALFAGFSMVVLVESSIPEALNGALLAVFGSAVAMTIALFLVSTLNSTYILVAILRYDCVRRDV---PFSEFWNKRCEPDWKIAL 138
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Match: W4FD65_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD65_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.480e-6 Identity = 37/109 (33.94%), Postives = 64/109 (58.72%), Query Frame = 2 Query: 152 VASLSALIAGFALVAMVEVTVPDNVDPVLLISFAATSASVVGLMLLAMLSSTFMLVAIMKY------------DVKAKDPNYPSFQRFWASRCSLSLSLSLSRKAVLFR 442
++ +SA ++GFALV+++ V +PD++D LL + TSA + M+L++L TF+++A+ +Y D + D +P F+R+W SRC + LS +LFR
Sbjct: 81 ISEISAELSGFALVSIINVNLPDDIDLTLLWVYGVTSALTICCMVLSLLVCTFLMMAVTRYCAHDLEFVVKRLDDEDIDRIHP-FERWWVSRCEVDWQLSY----LLFR 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9422.17180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9422.17180.1 >prot_H-paniculata_contig9422.17180.1 ID=prot_H-paniculata_contig9422.17180.1|Name=mRNA_H-paniculata_contig9422.17180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp MADMAWNIKCREEDINFRQTEIQWHEEEVWWRGVNDRKREVEEKAKQLEQback to top mRNA from alignment at H-paniculata_contig9422:276..8897+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9422.17180.1 ID=mRNA_H-paniculata_contig9422.17180.1|Name=mRNA_H-paniculata_contig9422.17180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8622bp|location=Sequence derived from alignment at H-paniculata_contig9422:276..8897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9422:276..8897+ >mRNA_H-paniculata_contig9422.17180.1 ID=mRNA_H-paniculata_contig9422.17180.1|Name=mRNA_H-paniculata_contig9422.17180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig9422:276..8897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |