mRNA_H-paniculata_contig9421.17179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 202 bits (514), Expect = 2.520e-50 Identity = 94/202 (46.53%), Postives = 133/202 (65.84%), Query Frame = 2 Query: 290 GAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW-PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
GA+ H GC+ D DRVL + MT +C+ C +AYMA Q G ECWCS+DG+++YDRHG + G CD C GD+ E TCGG +F+LY+L+W P PE+ EYV C+ D + DRV+ +++ +DDMT +C+ HC A +YG Q+ +ECWCG S + +YE+HG G+CHM C+GD ++ACGG+ A+ L+K
Sbjct: 1143 GAYEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHG--DTGVCDYPCRGDESE----TCGGVHSFNLYRLSWAPAPEDE-EYVGCYTDNKGDRVLSDMISSDDMTAAVCREHCADKD-APYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 1336
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.250e-48 Identity = 99/243 (40.74%), Postives = 140/243 (57.61%), Query Frame = 2 Query: 263 RRLEEDAMGGAFS----HKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGE---CDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM--------STSLRGEDLDDDWSADD 943
R+ D + FS H GC+ D DRVL ++++ MT MC HC + YMALQ+G ECWCS+ ++Y RH + G+ CD+ C G D E TCGG +AFDLYKL P+P ++ EYV CF D ++DR + ++ D+MT +C+ +C G + FY QYG+ECWCG + ++ EY++HG G C C GD +IACGG+ AF L++ +T E DDD +D
Sbjct: 299 RKRNNDGVKAEFSLEYEHIGCFADNKTDRVLGHLMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSGTDKGDADLCDLSCYGCDAE----TCGGLYAFDLYKLDGPMPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSS-FYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLDDDDDETATECADEGSDDDDHGED 536
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE) HSP 1 Score: 189 bits (481), Expect = 2.840e-46 Identity = 85/175 (48.57%), Postives = 122/175 (69.71%), Query Frame = 2 Query: 368 MTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW-PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
MT +C+ C A +AYMA Q G ECWCS+DG+++YDRHG + G CD C GD+ E TCGG +F+LY+L+W P PE+ EYV C+ D + DRV+ +++ +D+MT G+C+ HC A +YG Q+ +ECWCG S + +YE+HG G+CHM C+GD ++ACGG+ A+ L+K
Sbjct: 824 MTAELCYETCSAKGAAYMATQWGVECWCSRDGSLDYDRHG--DTGVCDYPCIGDESE----TCGGVHSFNLYRLSWAPAPEDE-EYVGCYADSKGDRVLFDMISSDNMTAGVCREHCADKD-APYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 188 bits (477), Expect = 4.450e-46 Identity = 94/214 (43.93%), Postives = 125/214 (58.41%), Query Frame = 2 Query: 254 PVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
PV+ ++E +S+ GC+ D +DRV YM MT +C +C + YMA Q+G ECWCS D +EYDRH G CD CGGD + CGG AFDLYK+ P EYV CF D R+DR++G E+ + DMT +C+ +C A FY QYG+ECWCG S + +Y++HG G C C+GD ++ACGGF AF L+K
Sbjct: 424 PVTMPVDE-----GYSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSDGV---CDHACGGDAAD----ICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYC-EERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI) HSP 1 Score: 178 bits (451), Expect = 6.030e-44 Identity = 96/218 (44.04%), Postives = 120/218 (55.05%), Query Frame = 2 Query: 242 TASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
T +APV + ++S+ GC+ D DRV YM MT +C +C + YMA Q+G ECWCS D EYDRH G CD CGGD E DY CGG AFDLYK+ P EYV CF D +D V+G E+ DMT +C+ +C + A FY Q G ECWCG S E +Y + G G C C+GD ++ACGGF AF L+K
Sbjct: 382 TVAAPVYEMPVTLPVEASYSYVGCFADNKHDRVFEYMRTSFTMTTAVCLEYCLERRATYMATQYGIECWCSVDAETEYDRHSDGV---CDHACGGD--EADY--CGGFDAFDLYKITEPREPTGDEYVGCFADNPEDWVLGGEIKSQPDMTQAVCRTYCEDLD-ANFYATQNGEECWCGMSEEEEDYTRSGRGSCLAGCSGDPAVACGGFNAFNLFKF 591
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 175 bits (444), Expect = 9.720e-44 Identity = 99/247 (40.08%), Postives = 136/247 (55.06%), Query Frame = 2 Query: 155 MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
M R AL+ A + +LET S+RGA V+A +RR + A+ H GCY D ++ + E MT MC+ C + S +M Q G+EC CS++ + Y ++G CD+ C GD E TCGG DLYKL ++ EYV C+ D + RVM +++V + MT MC++HC S A +Y QYGNEC+CG S + +YE HG G CHM C GD ACGG+ AF LY+
Sbjct: 1 MTRLAAALLVCATPVASLET--SLRGAEVSAGG--ARRGLSGSSYEAYEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAF---DFGVCDIPCAGDSDE----TCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVMEDMLVDEGMTTDMCRDHCES-SDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQF 235
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE) HSP 1 Score: 175 bits (444), Expect = 1.860e-43 Identity = 103/267 (38.58%), Postives = 143/267 (53.56%), Query Frame = 2 Query: 155 MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYM-IRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKMSTSLRGEDLDDDWSADDDEP 952
M R AL+ A + +LET S+RGA V A+A +RR + ++ H GCY D ++ + + MT +C+ C + + +M Q G+EC CS++ ++Y E G CD C GD E TCGG DLYKL ++ EY C+ DL + RVM +++V + MT MC++HC S A +Y QYGNEC+CG S + +YE HGPG CHM CAGD ACGG+ AF L+K + D S EP
Sbjct: 65 MTRLAAALLVCATPVASLET--SLRGAEVAAAAGGARRGLSGSSYESYEHLGCYVDNGMVNSSPHLPLVLDAMTNELCYDRCHELGAFFMGTQKGNECRCSREEDLDYFSF---ESGVCDEPCAGDSTE----TCGGDLTLDLYKLTPADEPDHEEYEGCWSDLGESRVMQDMLVDESMTTDMCRDHCES-SDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPAVPDVSEPPSEP 321
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 171 bits (433), Expect = 2.600e-42 Identity = 90/213 (42.25%), Postives = 119/213 (55.87%), Query Frame = 2 Query: 254 PVSRRLEEDAMGGAFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAWPLPENNGEYVQCFGDLRDDRVMG-EVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYK 889
PVS EE +S+ GC+ D DRV YM MT +C +C + +MA Q G ECWCS D +EYDRH G CD +CGG+ + CGG AFDLYK+ P EYV CF D R+DR++G E+ + DMT +C+ +C A FY QYG+ECWCG S + +Y++HG G C C+GD ++ACG +YK
Sbjct: 2 PVSMPAEE-----GYSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSDGV---CDCECGGEATD----ICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYC-EERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYK 201
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE) HSP 1 Score: 171 bits (433), Expect = 3.660e-41 Identity = 89/221 (40.27%), Postives = 121/221 (54.75%), Query Frame = 2 Query: 293 AFSHKGCYFDEAQDRVLWYMIRHEKMTPLMCHGHCDAMESAYMALQHGDECWCSKDGAMEYDRH--------GRGEYGECDMKCGGDDGEDDYVTCGGHFAFD------------LYKLAWPLPENNGEYVQCFGDLRDDRVM-GEVMVADDMTPGMCKNHCISVGGAKFYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKM 892
A++H GC+ D +DRVL MI MT MC+ HC + YMA Q+G ECWCS D ++Y RH GR +YG C +C GD + +C A + LYK+ P EYV CF D DDR++ E+ DMT +C+ +C G A FY QYG+ECWCG S + +Y++HG G C +C+GD + ACGGF +F L+K+
Sbjct: 450 AYTHVGCFSDNKEDRVLEAMITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGR-DYGLCGTRCEGDKVRILHGSCRQREALENHAMGEIRNLHYLYKITEPTEPEGEEYVGCFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFG-AHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFKL 668
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Match: D7G975_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G975_ECTSI) HSP 1 Score: 139 bits (351), Expect = 5.090e-31 Identity = 77/202 (38.12%), Postives = 105/202 (51.98%), Query Frame = 2 Query: 308 GCYFDEAQDRVLWYMIRHEKMTPLMCHGHC--DAMESAYMALQHGDECWCSKDGAMEYDRHGRGEYGECDMKCGGDDGEDDYVTCGGHFAFDLYKLAW---PLPENNGEYVQCFGDLRDDRVMGEVMVADDMTPGMCKNHCISVGGAK-FYGLQYGNECWCGRSYELLEYEKHGPGICHMKCAGDHSIACGGFQAFGLYKMS 895
GCY D+ DRVL M MTP +C +C ++ AY A+Q+G ECWC +D ++ RHG CD C GD ++CGG +AF LY L P P + YV CF D DRV+G + MT C ++C + +Y QYG +CWC +L +HG G C C GD CGGF+AF L++++
Sbjct: 282 GCYKDDPSDRVLTAMWSSPVMTPSVCAAYCHRESASYAYYAIQYGGECWC-QDTDIDL-RHGEAT---CDYACSGDAS----ISCGGFYAFTLYDLEGANLPTPPADDNYVGCFADDLQDRVLGAETSSSSMTSEACADYCANESPRNMYYATQYGAQCWCAEEVDL----RHGEGRCAYACTGDAKTTCGGFEAFDLFEVN 470 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9421.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9421.17179.1 >prot_H-paniculata_contig9421.17179.1 ID=prot_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp MARAVFALVAMAPAILALETFSSVRGAAVTASAPVSRRLEEDAMGGAFSHback to top mRNA from alignment at H-paniculata_contig9421:3432..9181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9421.17179.1 ID=mRNA_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5750bp|location=Sequence derived from alignment at H-paniculata_contig9421:3432..9181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9421:3432..9181+ >mRNA_H-paniculata_contig9421.17179.1 ID=mRNA_H-paniculata_contig9421.17179.1|Name=mRNA_H-paniculata_contig9421.17179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig9421:3432..9181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |