mRNA_H-paniculata_contig9420.17178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: D8LTD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTD8_ECTSI) HSP 1 Score: 405 bits (1040), Expect = 3.050e-130 Identity = 205/245 (83.67%), Postives = 224/245 (91.43%), Query Frame = 2 Query: 551 VLTGQAEMPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPPNPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLMGGA------EAQEAPPTSTVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAFST 1267
VLTGQAEMPA+G +M NS A KLSCEVFVGNIPPETQ+ TLQEYLGGAL+QVGLCKPPNPI+SIRMNARFAFLEMR+ E+AT+ALNLDGIPF GAALSVGRPKKYEGP+TPHKTWFDVLAECSFGLMGGA EA+ AP TSTVVRIGNVVTPEELTDDEAQ+EVVEDMTEECSKYG VA IEIPHVGG GAGVG+VFVK+ +LEDAQKAK+GFGSRTFDGKSVDATYF EE+FAAK+F++
Sbjct: 17 VLTGQAEMPAEGMMLMQNS-ATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEEATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLMGGAGQGGAAEAEPAP-TSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFAS 259
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A6H5LDH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH7_9PHAE) HSP 1 Score: 405 bits (1040), Expect = 4.530e-126 Identity = 205/245 (83.67%), Postives = 224/245 (91.43%), Query Frame = 2 Query: 551 VLTGQAEMPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPPNPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLMGGA------EAQEAPPTSTVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAFST 1267
VLTGQAEMPA+G +M NS A KLSCEVFVGNIPPETQ+ TLQEYLGGAL+QVGLCKPPNPI+SIRMNARFAFLEMR+ EDAT+ALNLDGIPF GAALSVGRPKKYEGP+TPHKTWFDVLAECSFGL+GGA EA+ AP TSTVVRIGNVVTPEELTDDEAQ+EVVEDMTEECSKYG VA IEIPHVGG GAGVG+VFVK+ +LEDAQKAK+GFGSRTFDGKSVDATYF EE+FAAK+F++
Sbjct: 302 VLTGQAEMPAEGMMLMQNS-ATKLSCEVFVGNIPPETQAPTLQEYLGGALVQVGLCKPPNPILSIRMNARFAFLEMRTAEDATAALNLDGIPFGGAALSVGRPKKYEGPVTPHKTWFDVLAECSFGLVGGAGQGGATEAEPAP-TSTVVRIGNVVTPEELTDDEAQKEVVEDMTEECSKYGAVAGIEIPHVGGAGAGVGFVFVKFHTLEDAQKAKKGFGSRTFDGKSVDATYFPEEQFAAKSFAS 544
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A835ZNU8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNU8_9STRA) HSP 1 Score: 242 bits (618), Expect = 1.270e-69 Identity = 131/245 (53.47%), Postives = 170/245 (69.39%), Query Frame = 2 Query: 551 VLTGQAE-----MPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLMGGAEAQEA--PPTSTVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAF 1261
+LTGQA + A + N++ N+ E+FVGN+P E Q+ LQ++LG A+ QVGL P NPIV +RMNARF+FLE RS E+AT AL L+ IPF + L+ RP KY GP+TP K+WF+ LA+ + ++G Q+A PP STVVRIG+VV +EL DDE+ +EV+EDM EECS+YG V IEIP AGVGYVFV+YS++E+A KA+ F SRTFDGK VDAT+F + FAAK F
Sbjct: 7 ILTGQAPETIATVAAATALVDPNTKTNR---EIFVGNVPLEAQADALQQFLGSAMQQVGLTTAPGNPIVHVRMNARFSFLEFRSMEEATHALFLNNIPFGSSTLTFARPSKYAGPVTPTKSWFETLADSN--VLGNVMEQQAAGPPPSTVVRIGSVVNADELVDDESYQEVIEDMREECSRYGTVLGIEIPR--NAAAGVGYVFVQYSTVEEATKARNAFSSRTFDGKQVDATFFGHDDFAAKRF 244
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A448YVH2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVH2_9STRA) HSP 1 Score: 189 bits (481), Expect = 6.700e-49 Identity = 110/246 (44.72%), Postives = 151/246 (61.38%), Query Frame = 2 Query: 554 LTGQAEMPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGL-CKPPNPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM---------GGAEAQEAPPTSTVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAF 1261
LTGQA +PA + +++ K++ E+FVGN PE L+E+LG A+ QVGL P NPI S R++ +FAF+E+RSPE+A +ALNL+ IPF GA L VGRP K+ GP H W DVLA+ G + G A + VV + N++T E+L+ +E E+VED +EC +YGQ+ + IP G PGA VF++Y+S EDA KA + RTFDG+ V+AT+F E KF K F
Sbjct: 168 LTGQA-LPAG---TVLDAEQEKINRELFVGNTTPEMTERMLREFLGNAMEQVGLNVMPGNPITSCRVSGKFAFVELRSPEEAANALNLNNIPFMGAQLRVGRPSKWSGPPDSHGNWEDVLAKYMSGELQAGNTAPGQGAAAMNSNVKATRVVELKNMLTXEDLSVEEEYNELVEDTEQECKQYGQLLNVYIPKKGEPGATK--VFLEYASTEDASKAIKSLEGRTFDGQRVEATFFDETKFMNKTF 407
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A7S2V6E6_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E6_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.190e-46 Identity = 110/240 (45.83%), Postives = 144/240 (60.00%), Query Frame = 2 Query: 554 LTGQAEMPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLC-KPPNPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM--GGAEAQEAPPTSTVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAFS 1264
LTGQ +G ++ S KL E+++G+ E LQE+LG A+ QVGL + NPIV +R + FAF+E+RS E+A + LNL+ IPF G L +GRP KY GP PH W DVLA+ G M GG AQ+ P S V+ + N+VT +EL DD +E+VED +EC KYG V ++EIP G P GVG VF++++S DA KA RTF G VDA YF E K+ K S
Sbjct: 301 LTGQ--QAPEGASVVDPS--TKLYRELYIGSTTAEMTELGLQEFLGTAMQQVGLTLQEGNPIVQVRHSGTFAFVELRSIEEANNCLNLNSIPFMGQFLKIGRPSKYPGPQVPHLNWEDVLAKYMAGEMPTGGGAAQQQP--SRVIALSNMVTTDELMDDTTYQEIVEDTRDECGKYGAVQSMEIPRPGAP-HGVGKVFIEFTSTADAAKAIGALKGRTFAGNKVDARYFPESKYQVKDLS 533
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A7S4I336_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I336_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.070e-46 Identity = 105/252 (41.67%), Postives = 154/252 (61.11%), Query Frame = 2 Query: 554 LTGQAEMP---ADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM------GGAEAQEAPPT------STVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAF 1261
LTG A +P A G +A S +K++ E+F+GN PE L ++LG A+ QVGL K P NPIV+ R + +FAF+E+R+ ++A SALNL+ IP+ GA L VGRP KY GP TPH W D+LA+ G + GG A AP + VV + ++T ++L +D+ +E++ED TEEC ++G + + IP GPGA +F++Y++ EDA +A RTFDG+ V A Y+ E +FAA+ +
Sbjct: 182 LTGTA-LPNGLAGAGGALAGSAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTDEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSKDGGGGAAPAPAAPHAIDATCVVELCQMLTQQDLENDDEYKEILEDTTEECGQFGSLKRVVIPR-SGPGATK--IFLEYATKEDAARAIASLAGRTFDGRKVTAVYYDEARFAAQDY 429
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A7R9WB13_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WB13_9STRA) HSP 1 Score: 177 bits (448), Expect = 2.360e-46 Identity = 98/237 (41.35%), Postives = 145/237 (61.18%), Query Frame = 2 Query: 605 SQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM-------GGAEAQEAPPT---------STVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAFS 1264
S +K++ E+F+GN PE L ++LG A+ QVGL K P NPIV+ R + +FAF+E+R+ E+A SALNL+ IP+ GA L VGRP KY GP TPH W D+LA+ G + GGA T + VV + +++T ++L +DE ++++ED TEEC ++G + + IP GPGA +F++Y++ +DA KA RTFDG+ V A YF E +FAA+ ++
Sbjct: 15 SAEDKINRELFIGNTTPEMTEQMLSDFLGKAMEQVGLSKAPGNPIVTCRTSGKFAFIELRTTEEAASALNLNNIPYLGAQLRVGRPSKYTGPETPHGNWEDILAKYMSGELQLPSAGGGGAXXXXXXXTXXXXXATDATRVVELRHMLTQQDLENDEEYKDILEDTTEECGQFGSLKKVVIPRT-GPGATK--IFLEYATKDDAAKAIASLAGRTFDGRKVTAVYFDEGRFAAEDYT 248
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A7S2HGX3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGX3_9STRA) HSP 1 Score: 180 bits (457), Expect = 4.400e-46 Identity = 108/250 (43.20%), Postives = 153/250 (61.20%), Query Frame = 2 Query: 554 LTGQAEMPADGGFMMANSQA--NKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM-----GGAEAQEAPPT------STVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAF 1261
LTGQA +PA + N+ +K++ E+F+GN PE L ++LG A+ QVGL P NPI + R++ +FAF+E+RS E+A +ALNL+ IP+ GA L VGRP KY G T H W D+LA+ G + GGA A A P + VV + N++T EELT D+ E++ED EECS++G + + IP GPGA +F++Y S +DA KA +G RTFDG+ V+A ++ E KFA K +
Sbjct: 128 LTGQA-LPAGLTPVPENTSPAEDKVNRELFIGNTTPEMTEGMLTDFLGKAMEQVGLSNQPGNPITACRVSGKFAFIELRSKEEAANALNLNNIPYLGAQLRVGRPSKYTGVQTSHGNWEDILAKYMSGELKLPSQGGAPAAAATPAEDVGSPTRVVELKNMLTKEELTSDQDYEEIMEDTKEECSQFGSLKNLVIPR-DGPGATK--IFLEYLSTDDAAKAIQGLAGRTFDGRKVEAVFYDETKFANKEY 373
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: K0SQC2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQC2_THAOC) HSP 1 Score: 179 bits (453), Expect = 6.570e-45 Identity = 110/267 (41.20%), Postives = 153/267 (57.30%), Query Frame = 2 Query: 560 GQAEMPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFG-------------LMGGAEAQEA------------PPT------STVVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFAAKAFS 1264
G A +P + G MA S +KLS E+F+GN PE + L+++LG A+ QVGL P NPIV++R +A+FAF+E+RS ++A +ALNL+ IP+ GA L VGRP KY GP TPH W D+LA+ G L+ A A A PP S VV + +++T ++L DD +++ED +ECS +G + I IP GPGA +F++Y + EDA KA G RTFDG+ V A YF KFA + +S
Sbjct: 172 GMAAVPENTGVTMALSGEDKLSRELFIGNTTPEMTAEMLRDFLGRAMEQVGLSTMPGNPIVTVRPSAKFAFIEVRSMQEAANALNLNNIPYLGAQLRVGRPSKYSGPETPHGNWEDILAKFMSGELHLKNNATQANPLVQQAHAVAAAASSLAPSLASVPPLASKASPSPVVELRHMLTQQDLDDDNEYNDILEDTRDECSSFGTLKNIVIPRK-GPGATK--IFLEYMTAEDAGKAIAGLAGRTFDGRKVTAVYFDTVKFANEDYS 435
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Match: A0A6U2QA35_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2QA35_9STRA) HSP 1 Score: 179 bits (455), Expect = 1.520e-44 Identity = 109/249 (43.78%), Postives = 149/249 (59.84%), Query Frame = 2 Query: 554 LTGQAEMPADGGFMMANSQAN--KLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKPP-NPIVSIRMNARFAFLEMRSPEDATSALNLDGIPFAGAALSVGRPKKYEGPITPHKTWFDVLAECSFGLM------GGAEAQEAP-----PTST---VVRIGNVVTPEELTDDEAQREVVEDMTEECSKYGQVAAIEIPHVGGPGAGVGYVFVKYSSLEDAQKAKRGFGSRTFDGKSVDATYFAEEKFA 1249
LTGQ +PA + AN K++ E+FVGN PE +L+++LG AL QVGL P NPI S RM+ +FAF+E+R+ ++A ALNL+ IP+ GA L VGRP K+ G TPH W D+LA+ G + G A AP PT+T VV + N++T E+L D+ E++ED +ECS +G + +EIP G G G +F++Y S DA KA G RTFDG+ V A YF+EEKF+
Sbjct: 256 LTGQP-LPAGMQSVPANGPPGEEKINRELFVGNTTPEMTEESLKDFLGKALEQVGLVNSPGNPINSCRMSGKFAFIELRTVDEAKKALNLNNIPYMGATLRVGRPSKWTGEHTPHGNWEDILAKYMSGELQLPAQPGHAPPVPAPKAPDVPTATQTKVVALTNMLTKEDLQSDQDYEEILEDTKDECSGFGSLVKVEIPR---SGPGEGKIFLQYVSASDATKAIEGLRGRTFDGRKVAAVYFSEEKFS 500 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9420.17178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9420.17178.1 >prot_H-paniculata_contig9420.17178.1 ID=prot_H-paniculata_contig9420.17178.1|Name=mRNA_H-paniculata_contig9420.17178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp MPADGGFMMANSQANKLSCEVFVGNIPPETQSTTLQEYLGGALMQVGLCKback to top mRNA from alignment at H-paniculata_contig9420:59..8524- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9420.17178.1 ID=mRNA_H-paniculata_contig9420.17178.1|Name=mRNA_H-paniculata_contig9420.17178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8466bp|location=Sequence derived from alignment at H-paniculata_contig9420:59..8524- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9420:59..8524- >mRNA_H-paniculata_contig9420.17178.1 ID=mRNA_H-paniculata_contig9420.17178.1|Name=mRNA_H-paniculata_contig9420.17178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig9420:59..8524- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |