Homology
BLAST of mRNA_H-paniculata_contig9372.17146.1 vs. uniprot
Match:
D7G2Y0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y0_ECTSI)
HSP 1 Score: 149 bits (376), Expect = 8.880e-33
Identity = 270/904 (29.87%), Postives = 349/904 (38.61%), Query Frame = 1
Query: 1 GYREHSQSHSTEEWRAVQKAARVLGVDSLEERDVEDRQRFSTXXXXXXXXXXXXXEVREMQESATGRQ--RWAPPRSSASKAARTLGVD---------------VSMLQEQATGNGKGXXXXXXXXXXXXKNKPRQGSISSLIRALEIGGDSQQAGGKESGEGEMGGSVHNARGMDDITLADRDIDGTSARGSICRSSSAAAQAMNSNKPEPSDD-QIDGLQTPAQRAAAEAGVSGNFTASRDDRDD-MEVETPPAQQPRSAALTSLTRSPAPLLAPFSSLPGPGATRPPQSPLGPGPSPAGSPLCLARLAPDGITAIPPPNMVG----------MRHVSDFAVGGGSGGERSSPTPMRLAEGKDTAGGGTAAQKMPHVLARGAEAKEHRQLESEAIGDGPDRSVGATRSASAXXXXXXXXXXXXXXXXXXXXXRHRASQSMRTEAKQCVSPQSYPLPSPIEPAAGWGLGWSAPSAFAASAKETPQHLRSGGYGSGGGGIGAGMDHKQY---------MEYKQEAPARSVSEGEWGVGPILPSLAGSRSQKYAQYGQMQMPGEWPSPDETPAGEFKQDSPGLAPGVAVGKDEWQAPPARPSSAPIPGAPQQXXXXXXRLPYSGSFSPRGLGEPPCSLSISLPSTAGGFSVGIGGAAVGNGLTAGYENSDGAGXXXXXXXXXXXXXXXXXXXXXXXXGPCAS--YSALAAMIPFVNPMGIN-----------STPAGGLQKVKQEDIR--------------------------------------------ISTPAGG---VPAMKGNNRRRGHPTAKGGKNMVDDSAVAAVVAVPPVSPVPQEAVAGAAIDATTAGGVSSRKQREVATRPREKGRFVKRPPAFLPISAFKPLGTKTEADLAAE 2418
G+ E S SHSTEEWRA+ KAARVLGVDSLEERDVED++R S+ V E+Q++A + WAPPRSSASKAAR LGV XXXXXXXXXXXXK QG+ISSLIRALEI G + ++G + G S G +D+ + + GS S+ A ++ +S PE SDD Q+ GLQTP +++EAG G SR +RDD M++ETPP+Q PRSA + SL ++ APLLAP++ P T P S G + G +IP P RH SDFA+ G E SP +AE K+ AG +A+K +AR +E + L + + G GW WSA A A +A T H A MD ++ ++++ P S +E VG + + AG + + P WP E KQ SP + V G++ P+P ++ SG G G+ L + G S G SD A GP AS Y ALAAMIP +NPMGI + A G Q VK E ++ +S GG A+KGN R+ G G V + +S+ KQREVATRPREKGRFVKR PAFLPISAFKP ++EAD AAE
Sbjct: 181 GHFEQSMSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVEN-VAELQQNANAARDRHWAPPRSSASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDNGSSSVGDNGSEDLHQIKKGLGKQQETGS--NRSTRATESCSS--PELSDDSQLAGLQTPGASSSSEAGPGGLRGFSRHNRDDDMDIETPPSQ-PRSAPVASLRKASAPLLAPYT----PSLT--PASSAGAAVTAXXXXXXXXXXXXXGSPSIPTPQRQQHXXXXXXXXVARHASDFALNEGV--EWRSPVSA-VAERKNGAGS-MSAEKGGGRVARVSEVLDDSPLVASSGNGGQ----------------------------------------------------------------GWPRDWSA--AAAGTAAITAPHHPXXXXXXXXRSSSAPMDQQRASRTASAMGPVDFRLPDPVPSWAEQRASVGAVN-TAAGCKESR---------PEVWP--------EHKQVSPVVPQLVRGGRE-----------LPLPSMLASAAAAEEKMGGSG-----GSGDVASGYGYPLTTVGGSDSSG---------------ESDSA-------------CDTFPDQMDEGEGPAASSAYEALAAMIPVINPMGIPRHQHGAGGPAATAAAAGQQHVKLEVVQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVPTKGDVWGENVSRFGGGDDRSSALKGNGRKVGGVGGCGSGAKVPQGSGGXXXXXXXXXX----------XXXXXXXXISTPKQREVATRPREKGRFVKRAPAFLPISAFKPPSDRSEADAAAE 930
BLAST of mRNA_H-paniculata_contig9372.17146.1 vs. uniprot
Match:
A0A6H5K804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K804_9PHAE)
HSP 1 Score: 114 bits (285), Expect = 6.940e-22
Identity = 130/324 (40.12%), Postives = 158/324 (48.77%), Query Frame = 1
Query: 1 GYREHSQSHSTEEWRAVQKAARVLGVDSLEERDVEDRQRFSTXXXXXXXXXXXXXEVREMQESATGRQ--RWAPPRSSASKAARTLGVD---------------VSMLQEQATGNGKGXXXXXXXXXXXXKNKPRQGSISSLIRALEIGG-----DSQQAGGKESGEGEMG--------------------GSVHNARGMDDIT----LADRDIDG-------TSARGSICRSSSAAAQAMNSNKP----------EPSDD-QIDGLQTPAQRAAAEAGVSGNFTASRDDRDD-MEVETPPAQQPRSAALTSLTRSPAPLLAPF 777
G+ E S SHSTEEWRA+ KAARVLGVDSLEERDVED++R S+ V E+Q++A + WAPPRS ASKAAR LGV XXXXXXXXXXXXK QG+ISSLIRALEI G + Q G + +G GS + R + + A D DG +SARGS S Q + E SDD Q+ GLQTP ++E G G SR RDD M++ETPP+Q PRSA + SL ++ APLLAP+
Sbjct: 176 GHFEQSSSHSTEEWRAMSKAARVLGVDSLEERDVEDQRRASSVKAAQILGVGVEN-VAELQQNANAARDRHWAPPRSGASKAARMLGVSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKATRGQGTISSLIRALEINGGTATGSTSQTGSSDXXXSSVGDNASEDLHQIKKGLGKQQETGSNRSTRATESCSSVSECAHTDTDGVSSVDGGSSARGSYDYSPVEGPQQQKQQQQHTRRASVSPAELSDDSQLAGLQTPGASCSSETGPGGLRGFSRHTRDDDMDIETPPSQ-PRSAPVASLRKASAPLLAPY 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9372.17146.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.88e-33 / Id = 29.87 Expect = 6.94e-22 / Id = 40.12 Sequence D7G2Y0_ECTSI A0A6H5K804_9PHAE
Match Name E-value Identity Description
D7G2Y0_ECTSI 8.880e-33 29.87 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5K804_9PHAE 6.940e-22 40.12 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 3209 Cds size 3207 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9372.17146.1
>prot_H-paniculata_contig9372.17146.1 ID=prot_H-paniculata_contig9372.17146.1|Name=mRNA_H-paniculata_contig9372.17146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1069bp
GYREHSQSHSTEEWRAVQKAARVLGVDSLEERDVEDRQRFSTQKAARLLG back to top mRNA from alignment at H-paniculata_contig9372:4258..9480+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9372.17146.1 ID=mRNA_H-paniculata_contig9372.17146.1|Name=mRNA_H-paniculata_contig9372.17146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5223bp|location=Sequence derived from alignment at H-paniculata_contig9372:4258..9480+ (Halopteris paniculata Hal_grac_a_UBK monoicous)GGCTATCGCGAGCACTCGCAGTCGCATTCGACGGAGGAGTGGCGGGCTGT
GCAGAAGGCCGCCCGCGTTTTGGGCGTTGACTCTTTGGAGGAGAGAGATG
TGGAGGACCGCCAGCGCTTTTCTACCCAAAAGGCTGCTCGATTGCTTGGA
GTGGACAACGTCGAGGAGGTGAGAGAAATGCAGGAGAGTGCCACCGGGCG
CCAGAGATGGGCCCCGCCTAGAAGTAGTGCATCGAAAGCTGCCCGCACGC
TTGGAGTAGATGTGTCCATGTTGCAGGAACAGGCTACAGGCAATGGAAAG
GGAAACAGTCGTCAACAATCGTCATCTGCCTCTAGCAGCAAGAACAAGCC
TCGACAGGGCAGTATCTCGAGCCTCATCCGAGCGCTCGAGATAGGGGGCG
ATTCCCAGCAGGCAGGTGGGAAGGAGAGTGGTGAGGGTGAGATGGGCGGC
AGTGTTCATAATGCTCGCGGAATGGA GTCCGGCAGCCCACATAGCTCTGC
CACTCGCCGCACAGAGTCCTGCAGTAGCTCCAGTGATATCACATTAGCTG
ACCGTGATATTGATGGTACGTCCGCTCGAGGCAGCATCTGCAGGAGCAGC
AGTGCGGCCGCGCAGGCCATGAATAGTAACAAGCCGGAGCCGTCGGACGA
CCAAATAGACGGCCTGCAGACGCCAGCGCAGAGAGCGGCGGCCGAGGCTG
GGGTTAGTGGAAATTTCACAGCCAGTCGAGACGACCGAGACGACATGGAG
GTGGAAACACCCCCTGCGCAGCAGCCCCGCTCCGCTGCGCTTACGTCCCT
AACGCGTTCGCCGGCTCCCCTGCTCGCCCCGTTTTCATCTTTACCCGGAC
CAGGCGCGACCCGCCCTCCCCAGTCGCCGCTGGGACCGGGTCCATCGCCG
GCAGGGTCGCCGCTTTGCTTGGCCCGCCTGGCACCCGATGGTATTACTGC
AATCCCGCCGCCGAATATGGTTGGTATGAGGCACGTATCAGATTTCGCTG
TGGGCGGTGGAAGCGGCGGGGAACGTTCCTCACCGACACCGATGAGGCTC
GCCGAAGGGAAGGATACAGCAGGGGGTGGAACGGCTGCGCAGAAGATGCC
GCACGTGCTTGCCAGGGGCGCAGAGGCCAAGGAGCACCGTCAGCTGGAGA
GCGAGGCAATCGGCGACGGACCGGACCGAAGCGTTGGAGCCACCAGGTCT
GCCTCTGCTCCAATACCGTGCCCGGCCGGCGCCGCTCCTGAATCTTCAAC
TGCCGCTGCTGCCGCCGAAGCCCGCCACCGTGCTTCGCAATCCATGCGCA
CCGAGGCCAAGCAATGCGTGTCCCCGCAGTCTTATCCGTTGCCGTCGCCG
ATTGAGCCGGCGGCGGGGTGGGGGTTAGGGTGGTCAGCTCCGTCGGCGTT
TGCCGCGAGCGCCAAGGAAACCCCGCAGCATCTACGTAGCGGAGGCTACG
GCAGCGGTGGCGGGGGTATAGGCGCCGGCATGGATCATAAGCAATACATG
GAGTACAAGCAGGAGGCTCCCGCGAGATCCGTGAGCGAAGGCGAATGGGG
CGTGGGGCCGATTTTGCCCTCCTTGGCAGGCTCAAGAAGCCAAAAGTACG
CACAGTACGGTCAGATGCAGATGCCTGGCGAGTGGCCTTCCCCTGACGAA
ACACCTGCTGGGGAGTTCAAACAAGACTCCCCTGGGCTGGCGCCGGGCGT
CGCAGTAGGGAAGGATGAGTGGCAAGCACCGCCGGCGCGGCCTTCCTCGG
CCCCAATTCCAGGAGCACCACAACAACAACAACAACAACAACAACGCCTC
CCGTACTCTGGTAGCTTCTCACCGAGGGGGCTCGGGGAGCCTCCCTGCTC
CTTGTCTATCTCGTTGCCATCGACTGCCGGCGGCTTTTCTGTAGGTATCG
GCGGGGCTGCGGTTGGGAACGGATTAACTGCAGGCTACGAAAATTCTGAT
GGAGCAGGGTGTGGTGGGGGGGGGGGGGGGGGGGGGGGCGGGGGCGGCGG
CGGTGACGGTGGCGGTGGCGGTACAGGCAAAGGGCCGTGCGCGTCCTACT
CGGCGCTAGCGGCCATGATACCGTTTGTCAATCCGATGGGTATCAACTCA
ACGCCCGCTGGTGGTTTGCAGAAGGTCAAGCAAGAGGACATTCGGATTTC
GACTCCAGCGGGTGGAGTGCCCGCGATGAAGGGCAACAATCGCCGTCGGG
GACACCCAACGGCGAAGGGCGGGAAGAATATGGTCGATGATTCGGCCGTG
GCGGCCGTGGTAGCTGTGCCGCCAGTTTCTCCCGTGCCGCAAGAGG GTGA
GCAATTGTTGTGGTGCCTTGTACATTTCTCAGGGATGTGTTTGATACCCC
ACCCCTCCCCCTCCTTTTGGCTCATGCAATGTGCGGTATTGGGTGCGGTA
AGGTGAAGCAAATTTTTTTTTCGGGGGGGTTTCTGGTAACCAGCACTTGG
AGCCGAAGGAATGAAATTGGTGGCAAAGGTGCTGTTAATTTGCGGCATCG
ACGGATTTCCTTTCTTGAAGCGCCATCATTGACCCAAGGGAGCACGCATC
TCTTAGTTCACAAACACCTCAACCCCCCTTCATTTAGCTTGAACAGCTTT
TTATCTACCTTTTGACCGTACTGAAGTATATATTTTCACTTCGTGCAAGT
TCCATGACCGCCCAGATTTTCCCAGATTTTTTCATTTGGATTCCTTTGAC
CTGCTTTCAGTGGCACCTAAACTCTGAGATACTTACTCCCTTGCTTCTTT
CGTCAGATGTTTGGCCCGTTTATTGTTGTTCATTTCTGCGTGTTCTTCTG
TATCAACAGTCCAGATGTCGGGGTGATTTACCTGTTGGAATCAGTGCGTT
TCAGCTGCTTGTCACCCACAAAATACAGCTCGCTGCGCTTTCATTTTGTT
TCGGAAGATGCACACGTGAACAACTGTTCTGAAATGACCCATAATTTATT
AGTCCCTTGAACATGCTCCAAGTGGCGGTGGACCCGACGGAACAGTATCG
TGGTTGATATCACTGTGTATTTCTGTACGCTGTGTTGCAGAGCCCTCCTT
ATTCCGTAGCTTAAAGCCAGGAATTCTCGAACGTTGAATCCCCTCCTCCC
TCCCTGCCGCTTCTCTGAGTACCACTCTTCGGCGACAATTGAATGTGCTG
CTATAGCTTGCTGGCGAAATAAATTTTACTGTGATACCCCAGCGTGATGT
ACCAAACCAGTACTGTAGTTTATAGGTGACACCACCTCTGCTGAGGATAA
CACCCCCCCCCCCCCCCTGTCGCTCCCCGAAAGAAATGCTATGTGTACGT
AATCGGGCAACTTCCCGAGTATATCATTTTATCACCAGATACAGGAAAAT
ATTTCCCTTCCGTATTAGAGTTGACAGATGAATCACCCTCCCTAAAGATG
GATGATGGCGGTCAGTACAACACTCTTTAGACCGCTGACGGGAGTTGGTA
GTTGGGGCACACAGTATTTGATAACTAGAGTCTGGTGGACGCATCACAGC
ATAGCACCTTTTGCCTGAACAACATGGAGAGTTACAGTCCTGTTTTTTTC
GTGTCTTGGGTTCCACAAGGTGCAACCCAAAATCGTGTGCATGCTATCAC
CTCCCCTGTTATCACTCCTCCTGTCACCTGCCTGGCCGGTGATGGACCTG
ATGTAGGATACATGCATGGTATTACACATCCGTATTATCACCCCCACCTG
CTGCCTGGCAATGCTCACAATATCTGAGCACTCGTCATCATGTCACTTGA
AGATGCTGAGGATACCTCCATTTTTTTGAGCATTGGTTATCCTTTCTACT
GTAATTCCTGCCCCTTATTTGGTTCAGTTTATGGAGCATAAGGAAGCAGT
TCAGCAGCCAGCTTGGAGATGCTGAACATGCCTCCGTTTTTGTTTTACGG
TGTTTGTCATGATTTCTTCAATGGATAGTAATTTGTCACTTGTTCATATC
TGCTGGTACATTTGACTCGCTCGTTACTCTATGGTACCTTTTCTACACCG
TAGTCTCGTAGTTTAGATGCCGTACTACTGGTGATTCTATCCTTGGCAAT
TGACGCTACCCGTGGCCCAGTGGTCTCGATGTTTTTTTTTTAACCCTTTC
TCTCAATCAAGACTTTCGGCCATCTACCTCGCTCCGATCGAAACAAAAGG
TGTCACTGTATCACCCAACACGTGGACTCTCACTGCCTACACCCTCATTC
CCTTTTTCATTTCTCTTCAAATCCCGTGTTTGACCTATCCTAATCGACCA
CAGCTGTTGCTGGGGCCGCAATCGACGCCACCACTGCCGGTGGAGTCTCC
TCCCGAAAACAGCGAGAGGTGGCCACGCGTCCCCGCGAAAAAGGCCGCTT
CGTCAAGCGCCCCCCAGCCTTCCTGCCCATCTCCGCCTTTAAACCCCTGG
GCACGAAGACCGAAGCGGACTTAGCGGCCGAGCGCGCGGAGGAGGCTAGG
GAAGAGGCAATGGAAGCGGCGGCGCGAGCGGCGGCAGCAGCCGCCGCAGC
TGCAGGGCAAAAGAGTATCGGTACTACTTCTTCGTCTTCCGTCGGCGCTG
CTTCGCCCCCGGCCAAGCCAACTGCCTTCACCCCCCCTGCGACTCCCGGC
ATGACTGGTTCAAGTCAGGCAGAGACACCACCACCTTGGTTAGTCTCCGG
CGGCAGAGGGATAGGCAACGCTGAGGGGGGTAGTGGTAGTGGCGGCGGCG
GCGGTGGCGGCGGATGGACCAGTGTTGGCTCGGCAAGTCGCGGGCGTAAC
AATGAGCGAGGCGTTTCACCGCCTTCTTCTCGCTCCGCGTCGGCCATTTG
GCCAAGCCGTGACGGTGAAGGTGAGAGCTTCGAGGGGGGCAGCGGCGGTG
GATCTGACCGCATGGTAGACACGGTCGGTGGCGGCGGCGGCAGCTCGGGA
GGGAGGGATCGTAGCATGAGCGATTGCGAGAGCGAGCGCGGTAGTGACGA
CCTTCGCGGAATGGCATTCTTGCGCAGTCCCGTCGGTATGGAGGGGGCTG
CTTCTTGGGATAGTCCTCGATTTGGCGTTTATTCGGCAACGGGTTCCTCG
GCGGCATCGACGCCCTCGAGCGCGCACAGGCACCGTGGGGTCCGCGATGG
CGGTCGGATGACTGGAATGGTTTCTCCGCGCCCCGTCCCGCAACTTTCGG
ATGTGATTTTGCCTTCATCGGCAGATGGCGAGTCTCGTGCACCGTGGGCA
GGCGGGATGTTGGGGGAGGCG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9372:4258..9480+
>mRNA_H-paniculata_contig9372.17146.1 ID=mRNA_H-paniculata_contig9372.17146.1|Name=mRNA_H-paniculata_contig9372.17146.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6414bp|location=Sequence derived from alignment at H-paniculata_contig9372:4258..9480+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top