mRNA_H-paniculata_contig9355.17130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A6H5K1V2_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V2_9PHAE) HSP 1 Score: 391 bits (1005), Expect = 1.760e-126 Identity = 235/438 (53.65%), Postives = 281/438 (64.16%), Query Frame = 3 Query: 36 MGEFGGKACFYPGCRQHDFLPLRCSACGLVFCTNHSAI-TDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQA---KAGSPDKLLKNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSGNEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPHGFPLGVILQDLAPE-LTSFDVITVRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAEVQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGE---------------------MFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQAPGA 1271
M EFG K C YPGCRQHDFLP C+AC VFC++H AI + H C HGE YL+SR R A H L+ SKPSEVM+AVTSRFDGRE ELNA H+NI K SE +A AG+PDKLL+N+Q+A+DKA T KGKRVSTQVHRMLLK+KAVGDKKLRMEDRFFLEVHY GN+ DVHHLFFSRLWTVGR LDDI+KTRRR+LRLKAGEE +PLELA G+ G P G I +L PE L FD + VRPR+ ++ ++ + G S + G+N D + S + + G V K ++AVA S V+S M I + HGK++YELGG+ P +VLDLKRR+E +TGVPF QKLLFKGIL+D D I +TKIV+GAKVMLLG A A
Sbjct: 1 MAEFGAKLCSYPGCRQHDFLPYACAACRQVFCSDHMAIGSGHRCDHGEEYLASRNGKGGRIAAPGS-HRLSLSKPSEVMSAVTSRFDGREKELNAVTTHFNI-KASEGEAGEGSAGAPDKLLRNSQLAMDKAATEKGKRVSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDDILKTRRRHLRLKAGEEARPLELARVGASSGLPTGGIFTNLPPEQLQLFDAVMVRPRTLPRA--GSSASDISAEGGSSDSTVAAPGLNVESAPDDLKGSG--IGGDEEPSEQQQRQTGHVLSTCAVGAKSSG-FEEAVAGSGVTSAXXXXXXXXXXXXXXXXXXXXXGMTITVCHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTAAAA 431
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: D8LBN6_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN6_ECTSI) HSP 1 Score: 269 bits (688), Expect = 1.430e-80 Identity = 161/321 (50.16%), Postives = 197/321 (61.37%), Query Frame = 3 Query: 381 KLLKNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSGNEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPHGFPLGVILQDLAPE-LTSFDVITVRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAEVQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGE--------------------MFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQAPGAGGK 1280
+LLKN+Q+A+DKA T KGKR+STQVHRMLLK+KAVGDKKLRMEDRFFLEVHY GN+ DVHHLFFSRLWTVGR LD I+KTRRR++RLKAGEE +PLELA G+ G P G IL +L PE L SFD + VRPR+ ++ ++T+ G S + G+N D + S + + G V K C + S M I +GHGK++YELGG+ P +VLDLKRR+E +TGVPF QKLLFKGIL+D D I +TKIV+GAKVMLLG A K
Sbjct: 32 RLLKNSQLAMDKAATEKGKRMSTQVHRMLLKAKAVGDKKLRMEDRFFLEVHYCGNDTDVHHLFFSRLWTVGRALDHILKTRRRHMRLKAGEEARPLELARVGASSGLPTGGILNNLPPEQLQSFDAVMVRPRTLPPA--GSSASDTSAQGGSSDSAVAAPGLNVEGAPDDLKGSG--IGGDEEPNKQQQRQTGHVLSTCAVGAKASGCEEAGEGSGXXXXXXXXXXXXXXXXASEXXXXXXGMTITVGHGKSVYELGGVMPDRMSVLDLKRRLEPITGVPFLRQKLLFKGILRDGDKIGATKIVEGAKVMLLGTVAAAAKK 348
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A4D9CUT0_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUT0_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 7.180e-12 Identity = 77/239 (32.22%), Postives = 105/239 (43.93%), Query Frame = 3 Query: 75 CRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQA----KAGSPDKLLKNAQIAVDKAMTA-KGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSG---------------------------NEDDVHHLFFSRLWTVGRTLDDIIKTRRRYLRLKAGEEEQPLELAPAGSPH 695
C ++DFLP RC+ C L+ CT+H A H+C G +S++ Q + LA E M V RFDG E A +V SQA + +K LK + T KG + +V +MLLKSKA G L +DRF+LEV G + + V +LFFSRLW++GR LD+ I+ RR LR + P +PA H
Sbjct: 12 CGRNDFLPHRCTLCSLLHCTDHMAPFAHECA-GREDNTSKDRPQAFGLGRA----LA-----EEMDRVRRRFDGAS-----EWATKEHFRVQGSQAGLVASFRAENKYLKAYREQAKAGKTRHKGHKTREKVRQMLLKSKAQGRSSLHADDRFYLEVRIGGLDVEEKGTASPSSLPPSAPASTPSVASSAEVVDYLFFSRLWSLGRVLDETIEKHRRALR-----QIYPSHYSPASPSH 230
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: UPI00148AD783 (AN1-type zinc finger protein 1 isoform X2 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD783) HSP 1 Score: 69.3 bits (168), Expect = 2.760e-9 Identity = 59/200 (29.50%), Postives = 87/200 (43.50%), Query Frame = 3 Query: 36 MGEFG--GKACFYPGCRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYLSSREHHQTRSATNSHYHPLAWSKPSEVMAAVTSRFDGREGELNAEVAHYNIAKVSESQAKAGSPDKLL-----KNAQIAVDKAMTAKGKRVSTQVHRMLLKSKAVGDKKLRMEDRFFLEVHYSG---NEDDVHHLFFSRLWTVGRTLD 605
M EF G+ C GC+Q DFLP C+ C VFC H DH C ++ E+ TR+ + S K E+M V + + +N K+ E + + + K I K K + + +V M +K AVGD K+ DR +L+V G ++ LFFS+ W+VGRT+D
Sbjct: 1 MAEFPNLGEHCSLDGCKQIDFLPFTCTKCQKVFCLEHKFPDDHSCTEFKSDTPHVEYTGTRAYSCS----FTECKARELMPVVCEKCSKNFCLGHRHQKDHNCEKLVEKITPTKTAEHVQQILASKKLNINPKKPRGKKSSKTAAKVALMKMKLHAVGDAKIPDFDRVYLQVVLPGGSVSKGPTKQLFFSKTWSVGRTID 196
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A7S3UX29_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX29_HETAK) HSP 1 Score: 63.9 bits (154), Expect = 1.900e-7 Identity = 77/286 (26.92%), Postives = 128/286 (44.76%), Query Frame = 3 Query: 462 MLLKSKAVGDKKLRMEDRFFLEVHYSGNEDD-VHHLFFSRLWTVGRTLDDII----KTRRRYLRLKAGE---EEQPLELAPAGSPHGFPLGVILQDLAPELTSFDVIT----------VRPRSSHAVTTATTRAETTKTGESDTLPEMSKGVNKAPLVDPVTSSNAE--VQSSIQGRGMDNEMGGSVAEVTPRAEKEEDCMQKAVASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLGQ 1259
M +KSK+ G + +++FF+ V + + H++F RLWTVGR +D +I + RR + KA E E ++ HG L + +FD++ + ++S+A TR + D + G + L N E + SS G + +M + P + E ++ SS ++ +G K +Y + + TVLDLK ++E LTG+P QKLL+KGIL+D+ I T + GAKV+L+ +
Sbjct: 1 MKIKSKSAGPAGVLNDNKFFVLVQLKTPDINWERHMYFPRLWTVGRAIDYVISFLSEEYRRAILGKALELYCERINSIVSKDTIIHGSKLEEFDTVILSFAGAFDLLLDGSCLDGEPDEKKQTSYAEHEGATRQS-----KMDKSIKADNGGEQTILASRDAKLNDEKCLISSSSGGPLSLQMNADSL-IPPSSPAHE-------SNPGTSSFTFYVKVG--KEMYSVADLDENANTVLDLKVKLEQLTGIPVQQQKLLYKGILQDSQVICGTAVKAGAKVILMSK 271
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A433PIH2_9FUNG (Ubiquitin-related domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PIH2_9FUNG) HSP 1 Score: 63.2 bits (152), Expect = 2.280e-7 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3 Query: 1056 IGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
+ HGK YE I P++ T+L+LK+ +E T +P QKL++KG+LKD +I S+KI DG KVML+G
Sbjct: 20 VTHGKTPYEFE-ISPES-TILELKQELEQRTQIPAAMQKLMYKGMLKDETTIESSKIKDGVKVMLIG 84
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A8H7PMB8_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PMB8_MORIS) HSP 1 Score: 62.4 bits (150), Expect = 8.950e-7 Identity = 29/76 (38.16%), Postives = 51/76 (67.11%), Query Frame = 3 Query: 1029 VSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
+++ + + I A+YEL Q+ T+LDLK+ ++ LTGVP QKL+FKG++K+ +++ K+ G+K+ML+G
Sbjct: 1 MTADNLSLQISFKGALYELNDRDSQS-TILDLKQHLQDLTGVPVERQKLMFKGLMKNEQTLSEAKVSQGSKIMLIG 75
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: UPI00083BD08A (ubiquitin domain-containing protein UBFD1-like isoform X1 n=3 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BD08A) HSP 1 Score: 62.0 bits (149), Expect = 9.740e-7 Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 3 Query: 996 DCMQKAVASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
DC KA S+V + + + K Y + P T+ D K++++ L GVP + QKL++KG+L+DN ++ S+ I GAK+ML+G
Sbjct: 54 DCENKAETPSEVIE----VKVVYNKNKYNVNA--PSNTTIADFKKQLQGLVGVPVSMQKLMYKGLLQDNQTLISSGITKGAKIMLVG 134
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A4P9W4T1_9FUNG (Ubiquitin-like domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W4T1_9FUNG) HSP 1 Score: 59.7 bits (143), Expect = 2.280e-6 Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 3 Query: 1062 HGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLL 1253
HGK +++ P + V DLK VE+ TGV N QKLL+KG+L+D ++A + DG KVML+
Sbjct: 9 HGKTAHDIS--LPLSTCVADLKAHVEVKTGVHANMQKLLYKGVLRDEQTLAEANVKDGVKVMLM 70
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Match: A0A7J7A3N9_9COLE (Ubiquitin-like domain-containing protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7A3N9_9COLE) HSP 1 Score: 59.7 bits (143), Expect = 5.310e-6 Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 1017 ASSDVSSGEMFIMIGHGKAIYELGGIQPQTCTVLDLKRRVELLTGVPFNCQKLLFKGILKDNDSIASTKIVDGAKVMLLG 1256
A+S++ + + + K Y++ P + +V D K++++ L GVP + QKL++KG+L+DN S+AS I GAK+ML+G
Sbjct: 50 ATSEIKEELIEVKVVFNKNKYDVS--TPASSSVADFKKQLQGLLGVPDSMQKLMYKGLLQDNQSLASLGITKGAKIMLVG 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9355.17130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9355.17130.1 >prot_H-paniculata_contig9355.17130.1 ID=prot_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp MGEFGGKACFYPGCRQHDFLPLRCSACGLVFCTNHSAITDHDCQHGEAYLback to top mRNA from alignment at H-paniculata_contig9355:725..8344- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9355.17130.1 ID=mRNA_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7620bp|location=Sequence derived from alignment at H-paniculata_contig9355:725..8344- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9355:725..8344- >mRNA_H-paniculata_contig9355.17130.1 ID=mRNA_H-paniculata_contig9355.17130.1|Name=mRNA_H-paniculata_contig9355.17130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig9355:725..8344- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |