mRNA_H-paniculata_contig9353.17129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 267 bits (682), Expect = 6.520e-75 Identity = 206/375 (54.93%), Postives = 237/375 (63.20%), Query Frame = 1 Query: 97 GTGTTARPAQLALDFRLYTLYPSDAEWLTLG-KKEGKLFDGDREEITLYFNRTRPGVFSTYMMVENLANRSDFKLVRVEMEVVDHG----VAQLFEILVSPKPSSSTPRHLATASDRRNGNSNMGXXXXXXXXXXXXXSRTRSGPIQAFSSGASGISSXGAGGIVGTGRGSGNAHKSSVGDDGXXXXXXXXXXXXXXXXIDAGDGCQGWPSS--KEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQLVARRHAPQLRL 1200 G G TA + AL F+LYTL+ SDAEWLTLG ++EG+L +G R+++TLYFNR+R GVFST+M+V+NL N +D K+VRVEMEVV+ G V QLFE+LVSP +ST R L+TAS G+SN XXXXXXXXXXXXX S S G DG XXXXXXXXXXXXXX +EPL LDYGDVYEG LYQRRSFVIVNHA MPLEFQLSSSLPASELNFSLSAVTLKQFKS++VEA TRLQVFAHYRP K+ G ++ +PG + A VRERLSITCRLVKDFQQEIQL ARRH+PQL + Sbjct: 2662 GKGATAGVGKAALKFKLYTLHTSDAEWLTLGGQREGQLREGGRQDVTLYFNRSRVGVFSTFMVVDNLTNPADIKVVRVEMEVVEGGPKDMVPQLFEVLVSPAVPAST-RELSTAS----GSSNXXXXXXXXXXXXXXXXXXXXXXXXXXES------SGGXXXXXXXXXXXXXXXXXXDKTDGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRREPLVLDYGDVYEGKLYQRRSFVIVNHAAMPLEFQLSSSLPASELNFSLSAVTLKQFKSVHVEAKTRLQVFAHYRPVEKSPAAVARKGSQRALTV-------------------SAAADDPGKEAEAVTVRERLSITCRLVKDFQQEIQLFARRHSPQLHV 3006
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA) HSP 1 Score: 194 bits (492), Expect = 7.770e-50 Identity = 140/398 (35.18%), Postives = 178/398 (44.72%), Query Frame = 1 Query: 157 YPSDAEWLTLGKKEGKLFDGDREEITLYFNRTRPGVFSTYMMVENLANRSDFKLVRVEMEVVDHG-----VAQLFEILVSPKPSSSTPRHLATASDRRNGNSNMGXXXXXXXXXXXXXSRTRSGPIQAFSSGASGISSXGAGGIVGTGRGSGNAHKSSVGDDGXXXXXXXXXXXXXXXXIDAGDGCQGWPSSKEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQLVARRHAPQLRLHRGSCGIRNTGGHSGDGGSGDGVDRGASCAAHGDSIGILYVVREL 1335 + +D EWLTLG +G L G + +TLY NRTR GVFSTYM++EN N +D K VRVEMEVV +A+LF++LVSP F++GA+ ++ L +++GDVYEG LY RRSFVI+N + MPLEFQLSSSL SELNFSLSAVTLKQFKS+ +EAN++LQVF HY P + + +NAS+ + VRE + ITCRLVKDFQQ +QL ARR PQLR H + TG G A +GD+ GIL+V +EL Sbjct: 1697 WETDVEWLTLGNSKGTLAAGKSQAVTLYLNRTRMGVFSTYMVMENARNPADLKFVRVEMEVVQQTHEGQQLARLFQVLVSP-----------------------------------------------FTTGAA--------------------------------------------------------QQEQGLVMNFGDVYEGKLYNRRSFVILNSSAMPLEFQLSSSLSPSELNFSLSAVTLKQFKSVTIEANSKLQVFVHYAPVARQAARST-----------------RQLSSAGWEEANASLPVQE------VPVREHIYITCRLVKDFQQVVQLWARRRTPQLRTH-----VEGTGDAEGS-------------ATYGDATGILFVAKEL 1950
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 166 bits (419), Expect = 2.980e-40 Identity = 91/150 (60.67%), Postives = 100/150 (66.67%), Query Frame = 1 Query: 718 KEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQL 1167 +EPL LDYGDVYEG LYQRRSFVIVN A MPLEFQLSSSLPASELNFSLSA TLKQFKS++VEA T LQV+AHYRP K+ G ++ +PG + A VRERLSITCRLVKDFQQEIQL Sbjct: 4266 REPLVLDYGDVYEGKLYQRRSFVIVNRAAMPLEFQLSSSLPASELNFSLSAATLKQFKSVHVEAKTSLQVYAHYRPVAKSPAAVARKGSQRALDV-------------------SAAADDPGKEAEAVTVRERLSITCRLVKDFQQEIQL 4396
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A2K1KP58_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KP58_PHYPA) HSP 1 Score: 76.6 bits (187), Expect = 6.130e-11 Identity = 80/359 (22.28%), Postives = 132/359 (36.77%), Query Frame = 1 Query: 133 LDFRLYTLYPSDAEWLTLGKKEGKLFDGDREEITLYFNRTRPGVFSTYMMVENLANRSDFKLVRVEMEVVDHGVAQLFEILVSPKPSSSTPRHLATASDRRNGNSNMGXXXXXXXXXXXXXSRTRSGPIQAFSSGASGISSXGAGGIVGTGRGSGNAHKSSVGDDGXXXXXXXXXXXXXXXXIDAGDGCQGWPSSKEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLP---ASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQLVARRHAPQLRL 1200 + +RL T+ DA WL++ G + + + L F+ GV+STY++VENL N +D K V + MEVV L + +P + P+ F + GD +G + +D ++Y Y+ RSFVIVN A++ +EF LSS+L ++ELNFSL +LK+F S+ ++A + ++++ H+ GA + EP A+D + + + CRLVKD+Q+ I A+ PQ+ + Sbjct: 2961 ISYRLCTISDGDAGWLSISSSSGIVESLRQNIVKLSFSTKAMGVYSTYLVVENLDNPADLKTVHLSMEVV---------ALKNARPEA---------------------------------------PLVPF-----------------------------------------------FYVLVQGDRAEG-------VAIDMAEIYYNFWYRNRSFVIVNEASVAMEFLLSSTLDHNDSTELNFSLENTSLKRFSSVTIDAKSSIRLWIHF------CIGAP--------------------------------KEEPLAEDMCDELSATIFVNCRLVKDYQRCIPFRAKCRYPQIGI 3179
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: F0ZM04_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZM04_DICPU) HSP 1 Score: 74.3 bits (181), Expect = 3.250e-10 Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 1 Query: 733 LDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPAS---ELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQLVARRHAPQLRL 1200 ++ GDVY + Y RSF++ N ++MPL+F LS+SLP S E+ FSLS L+QF ++ VE N++++VF ++ N S + + T ++ + CRL++D+QQ I L A PQ++L Sbjct: 2727 INLGDVYYNITYTDRSFIVSNSSSMPLDFMLSTSLPPSDPTEVCFSLSRSYLRQFNTLYVEPNSQVKVFLYFH---------------------------------CPSPQNTSANPLSLSTNNTTTKEIKIFLNCRLIRDYQQVINLTAACKYPQIKL 2852
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A024GCH3_9STRA (Uncharacterized protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GCH3_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 5.740e-10 Identity = 67/272 (24.63%), Postives = 108/272 (39.71%), Query Frame = 1 Query: 133 LDFRLYTLYPSDAEWLTLGKKEGKLFDGDR-EEITLYFNRTRPGVFSTYMMVENLANRSDFKLVRVEMEVVDHGVAQLFEILVSPKPSSSTPRHLATASDRRNGNSNMGXXXXXXXXXXXXXSRTRSGPIQAFSSGASGISSXGAGGIVGTGRGSGNAHKSSVGDDGXXXXXXXXXXXXXXXXIDAGDGCQGWPSSKEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRP 945 +DF+L T WL L + G L + + L+F R GV+STY++++NL N D K++ V EVV ++ + SS+ P NGN S R I S +++ ++G G + L ++YG+VY LY S V+ N + + L+F LSS+ EL+FS+S + K+ ++ + A+ R+QVF H+RP Sbjct: 3262 VDFQLRTADVQARSWLRLSRDRGTLTRACAYQTVVLHFLRDAVGVYSTYLVLQNLTNAVDLKIIHVRFEVVT-------DLNLLRSLSSNLP----------NGNDADPNLFRVLVSQQYHNSTKRKNRIHELS-----------------------RYETQEEEEGI-----------------------GSKKPLQTLVVEYGEVYYYKLYHNHSIVLENASDLHLDFMLSSNARPQELSFSVSPTSFKEISTVTLPAHVRVQVFLHFRP 3470
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: UPI000644C067 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C067) HSP 1 Score: 71.6 bits (174), Expect = 2.250e-9 Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 1 Query: 718 KEPLELDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPAS---ELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQLVARRHAPQLRL 1200 +E ++ GDV+ Y RSF++ N ++MPL+F L++SLP + E+ FSLS L+ F S+ V AN+ ++VF + P+ T T ++D A ++ + CRL++DFQ I L+A PQ+RL Sbjct: 2508 QEASLINLGDVFYNTTYTDRSFIVSNTSSMPLDFLLTTSLPPTDQTEVCFSLSRSYLRSFNSLYVNANSSVKVFIFFHPSGDTST----------------------------------------SEDHAVQKDIKIFVNCRLIRDFQHVITLLATCRNPQIRL 2631
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A8J4Q0Y0_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0Y0_9MYCE) HSP 1 Score: 71.6 bits (174), Expect = 2.270e-9 Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 1 Query: 733 LDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSL---PASELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRER---LSITCRLVKDFQQEIQLVARRHAPQLRL 1200 ++ GDVY G+ Y RSF++ N ++MPL+F LS+SL ++E+ FSLS L+QF ++ VE N++++VF ++ +A+ P D A + ++ + + CRL++D+QQ I L A PQL L Sbjct: 2679 INLGDVYYGITYTDRSFIVSNSSSMPLDFMLSTSLLPTDSTEVCFSLSRSYLRQFNTLYVEPNSQVKVFVYFH--------------------------------------SAAPSPPPSTSDIANLLTQKDIKIFLNCRLIRDYQQVINLSATCRYPQLDL 2802
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A7S2F8R5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8R5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 5.320e-9 Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1 Query: 163 SDAEWLTLGKKEGKLFDGDREEITLYFNRTRPGVFSTYMMVENLANRSDFKLVRVEMEV----VDHGVAQLFEILVS 381 +DA WL++G+ G+L G+ I L F+R G+FS+Y+++ENL+N D K+VRV ME+ + G QLF + VS Sbjct: 2 ADAAWLSIGRDRGELAMGEGHNIMLKFSRADIGMFSSYLILENLSNPLDMKVVRVTMEIASLPISEGGNQLFNVQVS 78
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Match: A0A7S0ZEV6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEV6_9RHOD) HSP 1 Score: 66.2 bits (160), Expect = 6.250e-8 Identity = 42/147 (28.57%), Postives = 70/147 (47.62%), Query Frame = 1 Query: 733 LDYGDVYEGMLYQRRSFVIVNHATMPLEFQLSSSLPAS---ELNFSLSAVTLKQFKSINVEANTRLQVFAHYRPARKTVTGAEVPGGXXXXXXXXXXXXXXXXXXXXXXSSNASVRAEPGADDGATAVRERLSITCRLVKDFQQEIQ 1164 ++YG V LY+ RSFV++NHA + +EF +LP S ELNFS++ +LK+ S+ + A ++ ++F +YRP+ + S + + +P D + L + CRLVK+FQ I+ Sbjct: 23 MNYGLVVADHLYRHRSFVVINHADVAMEFIFRHNLPPSAKSELNFSVTNTSLKKVSSLTISAKSKRRIFLYYRPSLE--------------------------------SFSVQDQTQPIHVDQPKLIEFNLHVLCRLVKNFQVTIK 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9353.17129.1 >prot_H-paniculata_contig9353.17129.1 ID=prot_H-paniculata_contig9353.17129.1|Name=mRNA_H-paniculata_contig9353.17129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=480bp SGLYPAANKRRVAHQGIGGGGSGVNSGSGSLGGTGTTARPAQLALDFRLYback to top mRNA from alignment at H-paniculata_contig9353:7341..9210+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9353.17129.1 ID=mRNA_H-paniculata_contig9353.17129.1|Name=mRNA_H-paniculata_contig9353.17129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1870bp|location=Sequence derived from alignment at H-paniculata_contig9353:7341..9210+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9353:7341..9210+ >mRNA_H-paniculata_contig9353.17129.1 ID=mRNA_H-paniculata_contig9353.17129.1|Name=mRNA_H-paniculata_contig9353.17129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2880bp|location=Sequence derived from alignment at H-paniculata_contig9353:7341..9210+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |