mRNA_H-paniculata_contig9353.17128.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.000e-32 Identity = 91/167 (54.49%), Postives = 102/167 (61.08%), Query Frame = 1 Query: 1 QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSSPSVSLLPGDTLDVQVECLALAGARLPPEFLPLP-PSSEEDSADT-ATIMEAGATVLAHGCSGSGTGSFCDWDLDARLMGTVRVEIALEGRLSGGPDDFSGAGEQGPVPGQGEGTLIE 495 +NVS E VSV + V PA EV G+LSLGA MQ QDSS+GVYA ADGRSSP V+LLPGD LDVQ ECLAL GARLPPE +P P P+ E+ T AT+ A T DW RLMGTVRVEIALE L G G+ G GQ EG L+E Sbjct: 2045 KNVSGETVSVMLGVTPAPEVVGVLSLGASMQ-QDSSTGVYASVGADGRSSPPVALLPGDVLDVQAECLALPGARLPPELIPPPGPNLAEEGGGTEATMFGAPGTA--------------DWGQHMRLMGTVRVEIALED-LDDVVPGAGGGGDGGS--GQEEGVLVE 2193
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 131 bits (329), Expect = 3.020e-32 Identity = 92/180 (51.11%), Postives = 105/180 (58.33%), Query Frame = 1 Query: 1 QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSSPSVSLLPGDTLDVQVECLALAGARLPPEFLPLP-PSSEEDSADTATIMEAGATVLAHGCSGSGTGSFCDWDLDARLMGTVRVEIALEGRLSGGPDDFS------GAGEQGPVP--------GQGEGTLIE 495 +NVS E VSV + V PA EVAG+LSLGA MQ QDSS+GVYA ADGRSSP+V+LLPGD LDVQ ECLAL GARLPPE +P P P+ E+ T M G + DW RL+GTVRVEIALE R +G PD GAG GQ EG L+E Sbjct: 3780 KNVSGETVSVMLGVMPAPEVAGVLSLGASMQ-QDSSAGVYASVGADGRSSPAVALLPGDVLDVQAECLALPGARLPPELIPPPEPNLAEEGGGTEAAM-------------FGVPATSDWGQHMRLVGTVRVEIALEDR-AGDPDQLDLDDVAPGAGXXXXXXXXXXXXXXGQEEGVLVE 3944 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9353.17128.1 >prot_H-paniculata_contig9353.17128.1 ID=prot_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp QNVSDEPVSVKVCVAPAVEVAGLLSLGAYMQHQDSSSGVYALTSADGRSSback to top mRNA from alignment at H-paniculata_contig9353:5286..5782+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9353.17128.1 ID=mRNA_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=497bp|location=Sequence derived from alignment at H-paniculata_contig9353:5286..5782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9353:5286..5782+ >mRNA_H-paniculata_contig9353.17128.1 ID=mRNA_H-paniculata_contig9353.17128.1|Name=mRNA_H-paniculata_contig9353.17128.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig9353:5286..5782+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |