mRNA_H-paniculata_contig9353.17127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE) HSP 1 Score: 150 bits (380), Expect = 4.860e-36 Identity = 93/200 (46.50%), Postives = 116/200 (58.00%), Query Frame = 1 Query: 568 SMTRCGPTFTVAANATRRLRLGIRPGLLTDPLPVGVVEDGRAVPFDGFVALA-----CADNDVR--------EASMYDEQ--ESAETKIDEVRVPTVPDRVNFSDTMTWARCSVASQILPVLQQPQAS-HSPRLVKLVRTVGTYCRPRFDVVGPAAIDLGNVGHTASRRGRRRFNVTLRNLSDMPVPVGVAGMSPELEVI 1119
S+TRCGP ++ A AT +RL IR G LT PLP VE+G+AV FDG VA A CA + V A +Y++Q E + R +P+RV CS + P +P LVKL+R VGT+CRPRF+VVG +DLGNVGHT SRRGRRRF V LR+L D VPVG+ G+SPELEV+
Sbjct: 1626 SLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVENGKAVGFDGIVAFARIGGDCASSVVAANGTSAAARAGLYEQQFGERRAAVPGDTRALLLPERVY---------CSGSGATTGEEDNPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVV 1816
BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 145 bits (367), Expect = 2.510e-34 Identity = 90/200 (45.00%), Postives = 112/200 (56.00%), Query Frame = 1 Query: 568 SMTRCGPTFTVAANATRRLRLGIRPGLLTDPLPVGVVEDGRAVPFDGFVALA-----CADN--------DVREASMYDEQESAETKI--DEVRVPTVPDRVNFSDTMTWARCSVASQILPVLQQPQAS-HSPRLVKLVRTVGTYCRPRFDVVGPAAIDLGNVGHTASRRGRRRFNVTLRNLSDMPVPVGVAGMSPELEVI 1119
S+TRCGP ++ A AT +RL IR G LT PLP VE G+AV FDG VA A CA + A +Y++Q + R +P+RV C + P +P LVKL+R VGT+CRPRF+VVG +DLGNVGHT SRRGRRRF V LR+L D VPVG+ G+SPELEV+
Sbjct: 3358 SLTRCGPAVSLPARATAVVRLCIRTGELTAPLPTAAVESGKAVDFDGIVAFARIGGACASSVAVGNATAAAARAGLYEQQFGGRRAAVPGDTRALFLPERVYC--------CGSGATTDGEEDDPSPEVRAPPLVKLLRAVGTFCRPRFEVVGTPNVDLGNVGHTKSRRGRRRFEVRLRSLCDTAVPVGMVGISPELEVV 3549 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9353.17127.1 >prot_H-paniculata_contig9353.17127.1 ID=prot_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp DSEGPQGKGAGLRGNGDEEEEDDDDDDRELEDSDRPWSGGEPFELSPVNVback to top mRNA from alignment at H-paniculata_contig9353:3456..4636+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9353.17127.1 ID=mRNA_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-paniculata_contig9353:3456..4636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9353:3456..4636+ >mRNA_H-paniculata_contig9353.17127.1 ID=mRNA_H-paniculata_contig9353.17127.1|Name=mRNA_H-paniculata_contig9353.17127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig9353:3456..4636+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |