mRNA_H-paniculata_contig9353.17126.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9353.17126.1
Unique NamemRNA_H-paniculata_contig9353.17126.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9353.17126.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 9.730e-34
Identity = 66/87 (75.86%), Postives = 73/87 (83.91%), Query Frame = 2 
Query:    2 FVVMVLG-KPATNTFSLTNQQTGTLLPGGSVDVSFAFHATSVGRWSQDLAVRNLSNKHDQAKVTVSVTVKPRMYLHFPDLDPGATFK 259
            FVVMV+  K  TN+  LTNQQTGT+ PG SV+VSF+FHATS+GRW+ DLAVRNL NKHDQAKVTVS TVKPRMYLHFPDLDP A  K
Sbjct: 2433 FVVMVVASKSPTNSLLLTNQQTGTVQPGESVEVSFSFHATSIGRWTHDLAVRNLGNKHDQAKVTVSATVKPRMYLHFPDLDPNAKGK 2519
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BLAST of mRNA_H-paniculata_contig9353.17126.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.010e-26
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 2 
Query:    2 FVVMVLGKPATNTFSLTNQQTGTLLPGGSVDVSFAFHATSVGRWSQDLAVRNLSNKHDQAKVTVSVTVKPRMYLHFPDLDPGATFK 259
            +VVM++ KPA NT ++T  QTGTL P GS DV  +  A  VGRW  D+ VRNL+NKHDQA VTV+ TVKP MYLHFPDLDP A  K
Sbjct:  505 YVVMLVAKPAGNTLTVTEHQTGTLPPKGSQDVRLSLRAAVVGRWMHDIVVRNLANKHDQATVTVTATVKPAMYLHFPDLDPAALGK 590
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BLAST of mRNA_H-paniculata_contig9353.17126.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.390e-21
Identity = 52/78 (66.67%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:   26 PATNTFSLTNQQTGTLLPGGSVDVSFAFHATSVGRWSQDLAVRNLSNKHDQAKVTVSVTVKPRMYLHFPDLDPGATFK 259
            PA  +  LTNQQTGT+ PG SV VSF+FHATSVGRW+ DLA          AKVTVS TVKPRMYLHFPDLDP A  K
Sbjct:  705 PAPLSLLLTNQQTGTVQPGESVQVSFSFHATSVGRWTHDLA----------AKVTVSATVKPRMYLHFPDLDPNAKGK 772
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9353.17126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHH6_ECTSI9.730e-3475.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYQ9_9STRA1.010e-2662.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KWQ8_9PHAE1.390e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9353contigH-paniculata_contig9353:800..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.7e-28
Seed eggNOG ortholog2880.D8LHH6
Hectar predicted targeting categoryother localisation
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size260
Cds size249
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9353.17126.1prot_H-paniculata_contig9353.17126.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9353 810..1383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.3396716-UTR-H-paniculata_contig9353:799..8091622931163.3396716-UTR-H-paniculata_contig9353:799..809Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9353 800..809 +
1691481618.9614716-UTR-H-paniculata_contig9353:799..8091691481618.9614716-UTR-H-paniculata_contig9353:799..809Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9353 800..809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.3619118-CDS-H-paniculata_contig9353:809..9771622931163.3619118-CDS-H-paniculata_contig9353:809..977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 810..977 +
1691481618.9733565-CDS-H-paniculata_contig9353:809..9771691481618.9733565-CDS-H-paniculata_contig9353:809..977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 810..977 +
1622931163.3904629-CDS-H-paniculata_contig9353:1302..13831622931163.3904629-CDS-H-paniculata_contig9353:1302..1383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 1303..1383 +
1691481618.9828372-CDS-H-paniculata_contig9353:1302..13831691481618.9828372-CDS-H-paniculata_contig9353:1302..1383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9353 1303..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9353.17126.1

>prot_H-paniculata_contig9353.17126.1 ID=prot_H-paniculata_contig9353.17126.1|Name=mRNA_H-paniculata_contig9353.17126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MVLGKPATNTFSLTNQQTGTLLPGGSVDVSFAFHATSVGRWSQDLAVRNL
SNKHDQAKVTVSVTVKPRMYLHFPDLDPGATFK
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mRNA from alignment at H-paniculata_contig9353:800..1383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9353.17126.1 ID=mRNA_H-paniculata_contig9353.17126.1|Name=mRNA_H-paniculata_contig9353.17126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=584bp|location=Sequence derived from alignment at H-paniculata_contig9353:800..1383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCGTCGTCATGGTGCTTGGAAAGCCGGCAACAAACACCTTTTCGTTGA
CCAACCAGCAAACAGGCACCCTACTGCCGGGGGGCTCTGTGGATGTGTCT
TTCGCGTTTCATGCAACCTCAGTCGGCCGTTGGTCACAAGATTTGGCCGT
GCGAAATCTCAGTAACAAGCACGACCAGGTAAGTAAACAGGGCAAAAAGC
CAAGCAGGGAGCGTTTTTTTTTTTCCAAGGCACAACCGGATCGGCGAGGG
TCCTGCGAACCTCTCTCCAGACGGAGTGTATGCTCTTCCGCACGGGTTAT
GGCGCCGGGCGTTTTGTCCATGTCTGATAACCCTAAAACCCGAATGAACA
GGCGAAGATATGCCATTCACCACGGTGGCGGCGCAGTTTGTAAAACAAAT
CATCGTTGCCAAGTTGTTATGCAACGCTACTGTCGTTCAACGCCACCCCT
CCAACCAACTACCAATTGCTCTGCCTATCCACCCCTTGCGTCTGTTGGCA
TAGGCTAAAGTTACGGTGTCTGTCACTGTGAAGCCTCGGATGTACCTGCA
CTTCCCGGACCTGGACCCAGGCGCTACGTTCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9353:800..1383+

>mRNA_H-paniculata_contig9353.17126.1 ID=mRNA_H-paniculata_contig9353.17126.1|Name=mRNA_H-paniculata_contig9353.17126.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig9353:800..1383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTTGGAAAGCCGGCAACAAACACCTTTTCGTTGACCAACCAGCA
AACAGGCACCCTACTGCCGGGGGGCTCTGTGGATGTGTCTTTCGCGTTTC
ATGCAACCTCAGTCGGCCGTTGGTCACAAGATTTGGCCGTGCGAAATCTC
AGTAACAAGCACGACCAGATGGTGCTTGGAAAGCCGGCAACAAACACCTT
TTCGTTGACCAACCAGCAAACAGGCACCCTACTGCCGGGGGGCTCTGTGG
ATGTGTCTTTCGCGTTTCATGCAACCTCAGTCGGCCGTTGGTCACAAGAT
TTGGCCGTGCGAAATCTCAGTAACAAGCACGACCAGGCTAAAGTTACGGT
GTCTGTCACTGTGAAGCCTCGGATGTACCTGCACTTCCCGGACCTGGACC
CAGGCGCTACGTTCAAAGCTAAAGTTACGGTGTCTGTCACTGTGAAGCCT
CGGATGTACCTGCACTTCCCGGACCTGGACCCAGGCGCTACGTTCAAA
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